PDB: 98225 件ウェブページステータス検索Chemie searchBIRD

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2Q97	Complex of mammalian actin with toxofilin from toxoplasma gondii 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ... 著者 Lee, S.H, Dominguez, R. 登録日 2007-06-12 公開日 2007-10-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Toxofilin from Toxoplasma gondii forms a ternary complex with an antiparallel actin dimer Proc.Natl.Acad.Sci.Usa, 104, 2007
1KL2	Crystal Structure of Serine Hydroxymethyltransferase Complexed with Glycine and 5-formyl tetrahydrofolate 分子名称: GLYCINE, N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid, PYRIDOXAL-5'-PHOSPHATE, ... 著者 Trivedi, V, Gupta, A, Jala, V.R, Saravanan, P, Rao, G.S.J, Rao, N.A, Savithri, H.S, Subramanya, H.S. 登録日 2001-12-11 公開日 2002-07-10 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of binary and ternary complexes of serine hydroxymethyltransferase from Bacillus stearothermophilus: insights into the catalytic mechanism. J.Biol.Chem., 277, 2002
7Z4E	SpCas9 bound to 8-nucleotide complementary DNA substrate 分子名称: CRISPR-associated endonuclease Cas9/Csn1, Non-target strand of 8 nucleotide complementary DNA substrate, Target strand of 8 nucleotide complementary DNA substrate, ... 著者 Pacesa, M, Jinek, M. 登録日 2022-03-03 公開日 2022-08-31 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.14 Å) 主引用文献 R-loop formation and conformational activation mechanisms of Cas9. Nature, 609, 2022
7Z4I	SpCas9 bound to 16-nucleotide complementary DNA substrate 分子名称: CRISPR-associated endonuclease Cas9/Csn1, Non-target strand of 16-nucleotide complementary DNA substrate, POTASSIUM ION, ... 著者 Pacesa, M, Jinek, M. 登録日 2022-03-03 公開日 2022-08-31 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.12 Å) 主引用文献 R-loop formation and conformational activation mechanisms of Cas9. Nature, 609, 2022
7Z4L	SpCas9 bound to 18-nucleotide complementary DNA substrate in the checkpoint state 分子名称: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, Non-target strand of 18-nucleotide complementary DNA substrate, ... 著者 Pacesa, M, Jinek, M. 登録日 2022-03-04 公開日 2022-08-31 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.54 Å) 主引用文献 R-loop formation and conformational activation mechanisms of Cas9. Nature, 609, 2022
3QQQ	Crystal structure of non-symbiotic plant hemoglobin from Trema tomentosa 分子名称: Non-symbiotic hemoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION 著者 Kakar, S, Sturms, R, Savage, A, Nix, J.C, Dispirito, A, Hargrove, M.S. 登録日 2011-02-16 公開日 2011-04-27 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Crystal structures of Parasponia and Trema hemoglobins: differential heme coordination is linked to quaternary structure. Biochemistry, 50, 2011
4A6Y	CRYSTAL STRUCTURE OF FAB FRAGMENT OF ANTI-(4-HYDROXY-3-NITROPHENYL) -ACETYL MURINE GERMLINE ANTIBODY BBE6.12H3 分子名称: ANTIBODY BBE6.12H3 HEAVY CHAIN, ANTIBODY BBE6.12H3 LIGHT CHAIN 著者 Khan, T, Salunke, D.M. 登録日 2011-11-10 公開日 2012-02-15 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural Elucidation of the Mechanistic Basis of Degeneracy in the Primary Humoral Response. J.Immunol., 188, 2012
3QBZ	Crystal structure of the Rad53-recognition domain of Saccharomyces cerevisiae Dbf4 分子名称: DDK kinase regulatory subunit DBF4, SULFATE ION 著者 Matthews, L.A, Jones, D.R, Prasad, A.A, Duncker, B.P, Guarne, A. 登録日 2011-01-14 公開日 2011-12-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.692 Å) 主引用文献 Saccharomyces cerevisiae Dbf4 has unique fold necessary for interaction with Rad53 kinase. J.Biol.Chem., 287, 2012
1Q0N	CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE FROM E. COLI WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.25 ANGSTROM RESOLUTION 分子名称: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, ... 著者 Blaszczyk, J, Ji, X. 登録日 2003-07-16 公開日 2003-08-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Catalytic Center Assembly of Hppk as Revealed by the Crystal Structure of a Ternary Complex at 1.25 A Resolution Structure, 8, 2000
7E1L	Crystal structure of apo form PhlH 分子名称: DUF1956 domain-containing protein 著者 Zhang, N, Wu, J, He, Y.X, Ge, H. 登録日 2021-02-01 公開日 2022-02-02 最終更新日 2022-08-24 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Molecular basis for coordinating secondary metabolite production by bacterial and plant signaling molecules. J.Biol.Chem., 298, 2022
7E1N	Crystal structure of PhlH in complex with 2,4-diacetylphloroglucinol 分子名称: 2,4-bis[(1R)-1-oxidanylethyl]benzene-1,3,5-triol, DUF1956 domain-containing protein 著者 Zhang, N, Wu, J, He, Y.X, Ge, H. 登録日 2021-02-02 公開日 2022-02-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Molecular basis for coordinating secondary metabolite production by bacterial and plant signaling molecules. J.Biol.Chem., 298, 2022
7NLM	LasB, N-aryl-2-butylmercaptoacetamide 分子名称: (S)-2-mercapto-N-(4-methoxyphenyl)-4-methylpentanamide, CALCIUM ION, Pro-elastase, ... 著者 Koehnke, J, Sikandar, A. 登録日 2021-02-22 公開日 2022-09-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 LasB, N-aryl-2-butylmercaptoacetamide inhibitor complex to be published
7NLK	LasB, N-aryl-2-butylmercaptoacetamide 分子名称: (S)-2-mercapto-4-methyl-N-(p-tolyl)pentanamide, CALCIUM ION, Pro-elastase, ... 著者 Koehnke, J, Sikandar, A. 登録日 2021-02-22 公開日 2022-09-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 LasB, N-aryl-2-butylmercaptoacetamide inhibitor complex to be published
1KKJ	Crystal Structure of Serine Hydroxymethyltransferase from B.stearothermophilus 分子名称: PYRIDOXAL-5'-PHOSPHATE, Serine Hydroxymethyltransferase 著者 Trivedi, V, Gupta, A, Jala, V.R, Saravanan, P, Rao, G.S.J, Rao, N.A, Savithri, H.S, Subramanya, H.S. 登録日 2001-12-09 公開日 2002-07-10 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Crystal structure of binary and ternary complexes of serine hydroxymethyltransferase from Bacillus stearothermophilus: insights into the catalytic mechanism. J.Biol.Chem., 277, 2002
5X4H	The crystal structure of Pyrococcus furiosus RecJ (wild-type) 分子名称: MAGNESIUM ION, Uncharacterized protein 著者 Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P. 登録日 2017-02-13 公開日 2018-02-14 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45. Nucleic Acids Res., 45, 2017
6QSI	Pseudomonas fluorescens Pf-5 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase 分子名称: 1,2-ETHANEDIOL, Benzoylformate decarboxylase, SODIUM ION, ... 著者 Wilkinson, R.C, Fulop, V. 登録日 2019-02-20 公開日 2020-01-08 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Characterization of Thiamine Diphosphate-Dependent 4-Hydroxybenzoylformate Decarboxylase Enzymes fromRhodococcus jostiiRHA1 andPseudomonas fluorescensPf-5 Involved in Degradation of Aryl C2Lignin Degradation Fragments. Biochemistry, 58, 2019
3N58	Crystal structure of S-ADENOSYL-L-HOMOCYSTEINE hydrolase from brucella melitensis in ternary complex with NAD and adenosine, orthorhombic form 分子名称: ADENOSINE, Adenosylhomocysteinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2010-05-24 公開日 2010-06-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Crystal structure of S-adenosyl-L-homocysteine hydrolase from brucella melitensis in ternary complex with NAD and adenosine, orthorhombic form To be Published
7VAX	V1EG of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state1-2 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
7VAI	V1EG of V/A-ATPase from Thermus thermophilus, state1-1 分子名称: V-type ATP synthase alpha chain, V-type ATP synthase beta chain, V-type ATP synthase subunit D, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
7VAP	V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-2 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
7VAT	V1EG of V/A-ATPase from Thermus thermophilus at low ATP concentration, state2-1 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
7VAM	V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state1-2 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
7VAQ	V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state3-2 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
7VB0	V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state3 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
7VAK	Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state2 分子名称: V-type ATP synthase alpha chain, V-type ATP synthase beta chain, V-type ATP synthase subunit D, ... 著者 Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. 登録日 2021-08-30 公開日 2022-07-13 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022

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