PDB: 222415 件ウェブページステータス検索Chemie searchBIRD

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2R17	Functional architecture of the retromer cargo-recognition complex 分子名称: GLYCEROL, Vacuolar protein sorting-associated protein 29, Vacuolar protein sorting-associated protein 35 著者 Hierro, A, Rojas, A.L, Rojas, R, Murthy, N, Effantin, G, Kajava, A.V, Steven, A.C, Bonifacino, J.S, Hurley, J.H. 登録日 2007-08-22 公開日 2007-10-30 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Functional architecture of the retromer cargo-recognition complex. Nature, 449, 2007
2R1W	Crystal structure of S25-2 Fab in complex with Kdo analogues 分子名称: 3,4,5-trideoxy-alpha-D-erythro-oct-3-en-2-ulopyranosonic acid-(2-8)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid, Fab, antibody fragment (IgG1k), ... 著者 Brooks, C.L, Evans, S.V. 登録日 2007-08-23 公開日 2008-12-30 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Exploration of specificity in germline monoclonal antibody recognition of a range of natural and synthetic epitopes. J.Mol.Biol., 377, 2008
3E3F	H. influenzae beta-carbonic anhydrase, variant V47A with 100 mM bicarbonate 分子名称: BICARBONATE ION, Carbonic anhydrase 2, ZINC ION 著者 Rowlett, R.S, Mysliwiec, M. 登録日 2008-08-07 公開日 2009-08-18 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Evidence for a bicarbonate "escort" site in Haemophilus influenzae beta-carbonic anhydrase . Biochemistry, 49, 2010
3ED0	Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase (FabZ) from Helicobacter pylori in complex with emodin 分子名称: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase, 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE, BENZAMIDINE, ... 著者 Zhang, L, Zhang, H, Liu, W, Guo, Y, Shen, X, Jiang, H. 登録日 2008-09-02 公開日 2009-07-21 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Emodin targets the beta-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: enzymatic inhibition assay with crystal structural and thermodynamic characterization BMC MICROBIOL., 9, 2009
2QZZ	Structure of Eugenol Synthase from Ocimum basilicum 分子名称: Eugenol synthase 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ethyl (1S,2S)-2-(4-hydroxy-3-methoxyphenyl)cyclopropanecarboxylate 著者 Louie, G.V, Noel, J.P, Bowman, M.E. 登録日 2007-08-17 公開日 2008-01-15 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure and reaction mechanism of basil eugenol synthase Plos One, 2, 2007
2R1S	Structure of the RNA brominated tridecamer r(GCGUU-5BUGAAACGC) at 1.4 A (Br1) 分子名称: MAGNESIUM ION, RNA (5'-R(*GP*CP*GP*UP*UP*(5BU)P*GP*AP*AP*AP*CP*GP*C)-3'), SODIUM ION 著者 Timsit, Y, Bombard, S. 登録日 2007-08-23 公開日 2007-09-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction. Rna, 13, 2007
2R25	Complex of YPD1 and SLN1-R1 with bound Mg2+ and BeF3- 分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Osmosensing histidine protein kinase SLN1, ... 著者 Copeland, D.M, Zhao, X, Soares, A.S, West, A.H. 登録日 2007-08-24 公開日 2008-01-15 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of a complex between the phosphorelay protein YPD1 and the response regulator domain of SLN1 bound to a phosphoryl analog J.Mol.Biol., 375, 2008
4G1K	Crystal structure of triosephosphate isomerase from Burkholderia thailandensis 分子名称: 1,2-ETHANEDIOL, ACETATE ION, SODIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-07-10 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One, 8, 2013
3EH7	The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83 分子名称: 4-hydroxybutyrate CoA-transferase, CHLORIDE ION 著者 Cuff, M.E, Duggan, E, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-09-11 公開日 2008-12-09 最終更新日 2017-10-25 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83 TO BE PUBLISHED
2R4E	Crystal structure of Escherichia coli Glycerol-3-phosphate Dehydrogenase in complex with DHAP 分子名称: 1,2-ETHANEDIOL, 1,3-DIHYDROXYACETONEPHOSPHATE, Aerobic glycerol-3-phosphate dehydrogenase, ... 著者 Yeh, J.I, Du, S, Chinte, U. 登録日 2007-08-31 公開日 2008-04-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism. Proc.Natl.Acad.Sci.Usa, 105, 2008
2R30	Crystal Structure of human GITRL mutant 分子名称: Tumor necrosis factor ligand superfamily member 18 著者 Chattopadhyay, K, Ramagopal, U.A, Nathenson, S.G, Almo, S.C. 登録日 2007-08-28 公開日 2007-11-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Assembly and structural properties of glucocorticoid-induced TNF receptor ligand: Implications for function. Proc.Natl.Acad.Sci.USA, 104, 2007
2R3C	Structure of the gp41 N-peptide in complex with the HIV entry inhibitor PIE1 分子名称: CHLORIDE ION, HIV entry inhibitor PIE1, YTTRIUM (III) ION, ... 著者 VanDemark, A.P, Welch, B, Heroux, A, Hill, C.P, Kay, M.S. 登録日 2007-08-29 公開日 2007-10-02 最終更新日 2018-08-08 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Potent D-peptide inhibitors of HIV-1 entry Proc.Natl.Acad.Sci.Usa, 104, 2007
4G2Y	Crystal structure of PDE5A complexed with its inhibitor 分子名称: 2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}-3,5,6,7-tetrahydro-4H-cyclopenta[d]pyrimidin-4-one, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ... 著者 Ren, J, Chen, T.T, Xu, Y.C. 登録日 2012-07-13 公開日 2013-06-26 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Design, synthesis, and pharmacological evaluation of monocyclic pyrimidinones as novel inhibitors of PDE5. J.Med.Chem., 55, 2012
4G38	Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer 分子名称: IRON/SULFUR CLUSTER, PHOSPHATE ION, POTASSIUM ION, ... 著者 Smith, K.W, Stroupe, M.E. 登録日 2012-07-13 公開日 2012-12-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer. Biochemistry, 51, 2012
2R6G	The Crystal Structure of the E. coli Maltose Transporter 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Maltose transport system permease protein malF, Maltose transport system permease protein malG, ... 著者 Oldham, M.L, Khare, D, Quiocho, F.A, Davidson, A.L, Chen, J. 登録日 2007-09-05 公開日 2007-11-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of a catalytic intermediate of the maltose transporter. Nature, 450, 2007
2RDU	Crystal Structure of Human Glycolate Oxidase in Complex with Glyoxylate 分子名称: FLAVIN MONONUCLEOTIDE, GLYOXYLIC ACID, Hydroxyacid oxidase 1 著者 Murray, M.S, Holmes, R.P, Lowther, W.T. 登録日 2007-09-25 公開日 2008-02-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Active Site and Loop 4 Movements within Human Glycolate Oxidase: Implications for Substrate Specificity and Drug Design. Biochemistry, 47, 2008
5RU1	PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000034687 分子名称: DIPHENYLACETIC ACID, Non-structural protein 3 著者 Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S. 登録日 2020-09-28 公開日 2020-12-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Sci Adv, 7, 2021
5RUI	PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000332651 分子名称: Non-structural protein 3, isoquinolin-1(2H)-one 著者 Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S. 登録日 2020-09-28 公開日 2020-12-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Sci Adv, 7, 2021
2R86	Crystal structure of PurP from Pyrococcus furiosus complexed with ATP 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, ... 著者 Zhang, Y, White, R.H, Ealick, S.E. 登録日 2007-09-10 公開日 2007-12-04 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii. Biochemistry, 47, 2008
2REO	Crystal structure of human sulfotransferase 1C3 (Sult1C3) in complex with PAP 分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, Putative sulfotransferase 1C3 著者 Tempel, W, Pan, P, Dong, A, Loppnau, P, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC) 登録日 2007-09-26 公開日 2007-10-09 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.651 Å) 主引用文献 Crystal structure of human sulfotransferase 1C3 (Sult1C3) in complex with PAP. To be Published
4G4L	Crystal structure of the de novo designed peptide alpha4tbA6 分子名称: ACETYL GROUP, DI(HYDROXYETHYL)ETHER, HEXAETHYLENE GLYCOL, ... 著者 Buer, B.C, Meagher, J.L, Stuckey, J.A, Marsh, E.N.G. 登録日 2012-07-16 公開日 2012-10-31 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains. Protein Sci., 21, 2012
2R8N	Structural Analysis of the Unbound Form of HIV-1 Subtype C Protease 分子名称: GLYCEROL, Pol protein 著者 Coman, R.M, Robbins, A.H, McKenna, R, Dunn, B.M. 登録日 2007-09-11 公開日 2008-07-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 High-resolution structure of unbound human immunodeficiency virus 1 subtype C protease: implications of flap dynamics and drug resistance. Acta Crystallogr.,Sect.D, 64, 2008
4G4Y	Crystal structure of OmpA peptidoglycan-binding domain from Acinetobacter baumannii 分子名称: ALANINE, Outer membrane protein Omp38, SULFATE ION 著者 Lee, W.C, Song, J.H, Park, J.S, Kim, H.Y. 登録日 2012-07-16 公開日 2013-07-24 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Enantiomer-dependent amino acid binding affinity of OmpA-like domains from Acinetobacter baumannii peptidoglycan-associated lipoprotein and OmpA To be Published
5RUX	PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000002020050 分子名称: 1,3-dihydro-2H-indol-2-one, Non-structural protein 3 著者 Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S. 登録日 2020-09-28 公開日 2020-12-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Sci Adv, 7, 2021
5RVF	PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000082473428_N3 分子名称: 3-{[(2R)-oxolan-2-yl]methyl}-3H-purin-6-amine, Non-structural protein 3 著者 Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S. 登録日 2020-09-28 公開日 2020-12-16 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking. Sci Adv, 7, 2021

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