PDB: 35127 件ウェブページステータス検索Chemie searchBIRD

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1CLQ	CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION 分子名称: CALCIUM ION, DNA (5'-D(*AP*GP*TP*AP*GP*TP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*AP*CP*TP*AP*CP*T)-3'), ... 著者 Shamoo, Y, Steitz, T.A. 登録日 1999-04-30 公開日 1999-10-28 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell(Cambridge,Mass.), 99, 1999
8HW5	Crystal structure of African swine fever virus CP312R 分子名称: ACETIC ACID, CP312R 著者 Wang, W.M, Wang, Z.Y, Fu, D, Guo, Y. 登録日 2022-12-29 公開日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 African swine fever virus CP312R is essential for virus replication and inhibits host protein expression by interacting with RPS27A To Be Published
5HP2	Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AU basepair at reaction site 分子名称: Double-stranded RNA-specific editase 1, INOSITOL HEXAKISPHOSPHATE, RNA (5'-R(*GP*AP*CP*UP*GP*AP*AP*CP*GP*AP*CP*UP*AP*AP*UP*GP*UP*GP*GP*GP*GP*AP*A)-3'), ... 著者 Matthews, M.M, Fisher, A.J, Beal, P.A. 登録日 2016-01-20 公開日 2016-04-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.983 Å) 主引用文献 Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity. Nat.Struct.Mol.Biol., 23, 2016
5OCL	Nanobody-anti-VGLUT nanobody complex 分子名称: anti-llama nanobody, anti-vglut nanobody 著者 Dutzler, R, Schenck, S, Kunz, L. 登録日 2017-07-03 公開日 2017-07-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Generation and Characterization of Anti-VGLUT Nanobodies Acting as Inhibitors of Transport. Biochemistry, 56, 2017
5HP3	Human Adenosine Deaminase Acting on dsRNA (ADAR2) bound to dsRNA sequence derived from S. cerevisiae BDF2 gene with AC mismatch at reaction site 分子名称: Double-stranded RNA-specific editase 1, INOSITOL HEXAKISPHOSPHATE, RNA (5'-R(*GP*AP*CP*UP*GP*AP*AP*CP*GP*AP*CP*CP*AP*AP*UP*GP*UP*GP*GP*GP*GP*AP*A)-3'), ... 著者 Matthews, M.M, Fisher, A.J, Beal, P.A. 登録日 2016-01-20 公開日 2016-04-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.091 Å) 主引用文献 Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity. Nat.Struct.Mol.Biol., 23, 2016
8F4Q	rat branched chain ketoacid dehydrogenase kinase in complex with inhibtors 分子名称: 3-chloro-5-fluorothieno[3,2-b]thiophene-2-carboxylic acid, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, ... 著者 Liu, S. 登録日 2022-11-11 公開日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.151 Å) 主引用文献 Discovery of branched-chain ketoacid dehydrogenase kinase (BDK) inhibitors acting as stabilizers or destabilizers To Be Published
8I5I	Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab 分子名称: Fab Heavy chain, Fab Light chain, Spike protein S1 著者 Yamamoto, A, Higashiura, A. 登録日 2023-01-25 公開日 2023-04-19 実験手法 X-RAY DIFFRACTION (3.06 Å) 主引用文献 Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol, 6, 2023
8I5H	Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab Light chain, ... 著者 Yamamoto, A, Higashiura, A. 登録日 2023-01-25 公開日 2023-04-19 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants. Commun Biol, 6, 2023
5J6T	NMR structures of hylin-a1 analogs: Hylin-Ac 分子名称: Hylin-a1 著者 Crusca Jr, E, Matos, C.O, Liao, L.M, Oliveira, A.L. 登録日 2016-04-05 公開日 2017-04-12 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 NMR structures and molecular dynamics simulation of hylin-a1 peptide analogs interacting with micelles. J. Pept. Sci., 23, 2017
5J6V	NMR structures of hylin-a1 analogs: Hylin-D 分子名称: Hylin-D 著者 Crusca Jr, E, Matos, C.O, Liao, L.M, Oliveira, A.L. 登録日 2016-04-05 公開日 2017-04-12 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 NMR structures and molecular dynamics simulation of hylin-a1 peptide analogs interacting with micelles. J. Pept. Sci., 23, 2017
5J6W	NMR structures of hylin-a1 analogs: Hylin-K 分子名称: Hylin-K 著者 Crusca Jr, E, Matos, C.O, Liao, L.M, Oliveira, A.L. 登録日 2016-04-05 公開日 2017-04-12 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 NMR structures and molecular dynamics simulation of hylin-a1 peptide analogs interacting with micelles. J. Pept. Sci., 23, 2017
3STB	A complex of two editosome proteins and two nanobodies 分子名称: MP18 RNA editing complex protein, RNA-editing complex protein MP42, single domain antibody VHH 著者 Park, Y.-J, Hol, W. 登録日 2011-07-09 公開日 2011-11-02 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of a heterodimer of editosome interaction proteins in complex with two copies of a cross-reacting nanobody. Nucleic Acids Res., 40, 2012
2W03	Co-complex Structure of Achromobactin Synthetase Protein D (AcsD) with adenosine, sulfate and citrate from Pectobacterium Chrysanthemi 分子名称: ACSD, ADENOSINE, CITRIC ACID, ... 著者 Schmelz, S, McMahon, S.A, Kadi, N, Song, L, Oves-Costales, D, Oke, M, Liu, H, Johnson, K.A, Carter, L, White, M.F, Challis, G.L, Naismith, J.H. 登録日 2008-08-08 公開日 2009-01-13 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Acsd Catalyzes Enantioselective Citrate Desymmetrization in Siderophore Biosynthesis Nat.Chem.Biol., 5, 2009
4IPC	Structure of the N-terminal domain of RPA70, E7R mutant 分子名称: Replication protein A 70 kDa DNA-binding subunit 著者 Feldkamp, M.D, Frank, A.O, Vangamudi, B, Fesik, S.W, Chazin, W.J. 登録日 2013-01-09 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 Surface Reengineering of RPA70N Enables Cocrystallization with an Inhibitor of the Replication Protein A Interaction Motif of ATR Interacting Protein. Biochemistry, 52, 2013
4IPD	Structure of the N-terminal domain of RPA70, E100R mutant 分子名称: Replication protein A 70 kDa DNA-binding subunit 著者 Feldkamp, M.D, Frank, A.O, Vangamudi, B, Fesik, S.W, Chazin, W.J. 登録日 2013-01-09 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Surface Reengineering of RPA70N Enables Cocrystallization with an Inhibitor of the Replication Protein A Interaction Motif of ATR Interacting Protein. Biochemistry, 52, 2013
4IPG	Structure of the N-terminal domain of RPA70, E7R, E100R mutant 分子名称: Replication protein A 70 kDa DNA-binding subunit 著者 Feldkamp, M.D, Frank, A.O, Vangamudi, B, Fesik, S.W, Chazin, W.J. 登録日 2013-01-09 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Surface Reengineering of RPA70N Enables Cocrystallization with an Inhibitor of the Replication Protein A Interaction Motif of ATR Interacting Protein. Biochemistry, 52, 2013
4IPH	Structure of N-terminal domain of RPA70 in complex with VU079104 inhibitor 分子名称: Replication protein A 70 kDa DNA-binding subunit, ~{N}-(2,3-dimethylphenyl)-7-oxidanylidene-12-sulfanylidene-5,11-dithia-1,8-diazatricyclo[7.3.0.0^{2,6}]dodeca-2(6),3,9-triene-10-carboxamide 著者 Feldkamp, M.D, Frank, A.O, Vangamudi, B, Fesik, S.W, Chazin, W.J. 登録日 2013-01-09 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Surface Reengineering of RPA70N Enables Cocrystallization with an Inhibitor of the Replication Protein A Interaction Motif of ATR Interacting Protein. Biochemistry, 52, 2013
3RG2	Structure of a two-domain NRPS fusion protein containing the EntE adenylation domain and EntB aryl-carrier protein from enterobactin biosynthesis 分子名称: 4'-PHOSPHOPANTETHEINE, 5'-deoxy-5'-({[2-(2-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine, Enterobactin synthase component E (entE), ... 著者 Sundlov, J.A, Gulick, A.M. 登録日 2011-04-07 公開日 2012-03-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural and Functional Investigation of the Intermolecular Interaction between NRPS Adenylation and Carrier Protein Domains. Chem.Biol., 19, 2012
4L0U	Crystal structure of Plasmodium vivax Prx1a 分子名称: 2-Cys peroxiredoxin, putative, ACETATE ION 著者 Gretes, M.C, Karplus, P.A. 登録日 2013-06-01 公開日 2016-11-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Observed octameric assembly of a Plasmodium yoelii peroxiredoxin can be explained by the replacement of native "ball-and-socket" interacting residues by an affinity tag. Protein Sci., 22, 2013
1B8H	SLIDING CLAMP, DNA POLYMERASE 分子名称: DNA POLYMERASE PROCESSIVITY COMPONENT, DNA POLYMERASE fragment 著者 Shamoo, Y, Steitz, T.A. 登録日 1999-02-01 公開日 1999-02-09 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell(Cambridge,Mass.), 99, 1999
3ERD	HUMAN ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN IN COMPLEX WITH DIETHYLSTILBESTROL AND A GLUCOCORTICOID RECEPTOR INTERACTING PROTEIN 1 NR BOX II PEPTIDE 分子名称: ACETIC ACID, CHLORIDE ION, DIETHYLSTILBESTROL, ... 著者 Shiau, A.K, Barstad, D, Loria, P.M, Cheng, L, Kushner, P.J, Agard, D.A, Greene, G.L. 登録日 1999-03-31 公開日 1999-04-08 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 The structural basis of estrogen receptor/coactivator recognition and the antagonism of this interaction by tamoxifen. Cell(Cambridge,Mass.), 95, 1998
3WV2	Crystal structure of the catalytic domain of MMP-13 complexed with N-(3-methoxybenzyl)-4-oxo-3,4-dihydroquinazoline-2-carboxamide 分子名称: CALCIUM ION, Collagenase 3, N-(3-methoxybenzyl)-4-oxo-3,4-dihydroquinazoline-2-carboxamide, ... 著者 Oki, H, Tanaka, Y. 登録日 2014-05-12 公開日 2014-09-24 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Thieno[2,3-d]pyrimidine-2-carboxamides bearing a carboxybenzene group at 5-position: highly potent, selective, and orally available MMP-13 inhibitors interacting with the S1′′ binding site. Bioorg.Med.Chem., 22, 2014
1XZ0	Crystal structure of CD1a in complex with a synthetic mycobactin lipopeptide 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 6-(HYDROXY-HEXADECANOYL-AMINO)-2-{[(4S)-2-(2-HYDROXY-PHENYL)-4,5-DIHYDRO-OXAZOLE-4-CARBONYL]-AMINO}-HEXANOIC ACID 2-[(3S)-1-(TERT-BUTYL-DIPHENYL-SILANYLOXY)-2-OXO-AZEPAN-3-YLCARBAMOYL]-(1S)-1-METHYL-ETHYL ESTER, Beta-2-microglobulin, ... 著者 Zajonc, D.M, Crispin, M.D, Bowden, T.A, Young, D.C, Cheng, T.Y, Hu, J, Costello, C.E, Miller, M.J, Moody, D.B, Wilson, I.A. 登録日 2004-11-11 公開日 2005-03-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Molecular Mechanism of Lipopeptide Presentation by CD1a. Immunity, 22, 2005
3WV3	Crystal structure of the catalytic domain of MMP-13 complexed with N-(3-methoxybenzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-2-carboxamide 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Collagenase 3, ... 著者 Oki, H, Tanaka, Y. 登録日 2014-05-12 公開日 2014-09-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Thieno[2,3-d]pyrimidine-2-carboxamides bearing a carboxybenzene group at 5-position: highly potent, selective, and orally available MMP-13 inhibitors interacting with the S1′′ binding site. Bioorg.Med.Chem., 22, 2014
3OUE	Structure of C-terminal hexaheme fragment of GSU1996 分子名称: Cytochrome c family protein, HEME C, SULFATE ION 著者 Pokkuluri, P.R, Schiffer, M. 登録日 2010-09-14 公開日 2010-12-29 最終更新日 2021-03-03 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure of a novel dodecaheme cytochrome c from Geobacter sulfurreducens reveals an extended 12nm protein with interacting hemes. J.Struct.Biol., 174, 2011

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