PDB: 682 件ウェブページステータス検索Chemie searchBIRD

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8FCQ	Cryo-EM structure of p97:UBXD1 PUB-in state 分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6 著者 Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R. 登録日 2022-12-01 公開日 2023-06-21 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.93 Å) 主引用文献 The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions. Nat.Struct.Mol.Biol., 30, 2023
8FCM	Cryo-EM structure of p97:UBXD1 open state 分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6 著者 Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R. 登録日 2022-12-01 公開日 2023-06-21 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.27 Å) 主引用文献 The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions. Nat.Struct.Mol.Biol., 30, 2023
8DR0	Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction 分子名称: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.42 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DQZ	Intermediate state of RFC:PCNA bound to a 3' ss/dsDNA junction 分子名称: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DQX	Open state of RFC:PCNA bound to a 3' ss/dsDNA junction 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*CP*CP*GP*AP*GP*CP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*GP*CP*CP*CP*GP*GP*A)-3'), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DR6	Closed state of RFC:PCNA bound to a nicked dsDNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (32-MER), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.39 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8FCO	Cryo-EM structure of p97:UBXD1 meta state 分子名称: ADENOSINE-5'-DIPHOSPHATE, Transitional endoplasmic reticulum ATPase, UBX domain-containing protein 6 著者 Braxton, J.R, Tucker, M.R, Tse, E, Southworth, D.R. 登録日 2022-12-01 公開日 2023-06-21 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.31 Å) 主引用文献 The p97/VCP adaptor UBXD1 drives AAA+ remodeling and ring opening through multi-domain tethered interactions. Nat.Struct.Mol.Biol., 30, 2023
8HL7	Crystal structure of p97 N/D1 in complex with a valosin-containing protein methyltransferase 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, ... 著者 Kang, W, Yang, J.K. 登録日 2022-11-29 公開日 2023-07-12 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for recognition and methylation of p97 by METTL21D, a valosin-containing protein lysine methyltransferase. Iscience, 26, 2023
8D6Y	Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ADP-bound Mpa ATPase 分子名称: AAA ATPase forming ring-shaped complexes, Proteasome subunit alpha, Proteasome subunit beta, ... 著者 Xiao, X, Li, H. 登録日 2022-06-06 公開日 2022-08-03 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation. Msphere, 7, 2022
8CVT	Human 19S-20S proteasome, state SD2 分子名称: 26S protease regulatory subunit 10B, 26S protease regulatory subunit 8, 26S proteasome complex subunit SEM1, ... 著者 Zhao, J. 登録日 2022-05-18 公開日 2022-11-02 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural insights into the human PA28-20S proteasome enabled by efficient tagging and purification of endogenous proteins. Proc.Natl.Acad.Sci.USA, 119, 2022
8D6X	Structure of the Mycobacterium tuberculosis 20S proteasome bound to the ATP-bound Mpa ATPase 分子名称: AAA ATPase forming ring-shaped complexes, Proteasome subunit alpha, Proteasome subunit beta, ... 著者 Xiao, X, Li, H. 登録日 2022-06-06 公開日 2022-08-03 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 The beta-Grasp Domain of Proteasomal ATPase Mpa Makes Critical Contacts with the Mycobacterium tuberculosis 20S Core Particle to Facilitate Degradation. Msphere, 7, 2022
8H3H	Human ATAD2 Walker B mutant, ATP state 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATPase family AAA domain-containing protein 2 著者 Cho, C, Song, J. 登録日 2022-10-08 公開日 2023-10-18 実験手法 ELECTRON MICROSCOPY (3.15 Å) 主引用文献 Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication. Commun Biol, 6, 2023
8DAW	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uD) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... 著者 Lee, H.G, Lima, C.D. 登録日 2022-06-14 公開日 2022-11-30 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAU	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (uA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... 著者 Lee, H.G, Lima, C.D. 登録日 2022-06-14 公開日 2022-11-30 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAR	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex unbound but in the presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... 著者 Lee, H.G, Lima, C.D. 登録日 2022-06-14 公開日 2022-11-30 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAS	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intA) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... 著者 Lee, H.G, Lima, C.D. 登録日 2022-06-14 公開日 2022-11-30 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAT	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intB) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... 著者 Lee, H.G, Lima, C.D. 登録日 2022-06-14 公開日 2022-11-30 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAV	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uC) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... 著者 Lee, H.G, Lima, C.D. 登録日 2022-06-14 公開日 2022-11-30 最終更新日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8HRZ	Crystal structure of the p97-N/D1 hexamer in complex with six p47-UBX domains 分子名称: ADENOSINE-5'-DIPHOSPHATE, NSFL1 cofactor p47, Transitional endoplasmic reticulum ATPase 著者 Nguyen, T.Q, Kang, W. 登録日 2022-12-16 公開日 2023-12-20 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of the p97-N/D1 hexmaer in complex with six p47-UBX domains J. Korean Chem. Soc., 68, 2024
1G3I	CRYSTAL STRUCTURE OF THE HSLUV PROTEASE-CHAPERONE COMPLEX 分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP-DEPENDENT HSLU PROTEASE ATP-BINDING SUBUNIT HSLU, ATP-DEPENDENT PROTEASE HSLV 著者 Sousa, M.C, Trame, C.B, Tsuruta, H, Wilbanks, S.M, Reddy, V.S, McKay, D.B. 登録日 2000-10-24 公開日 2000-11-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.41 Å) 主引用文献 Crystal and solution structures of an HslUV protease-chaperone complex. Cell(Cambridge,Mass.), 103, 2000
1IM2	HslU, Haemophilus Influenzae, Selenomethionine Variant 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU, SULFATE ION 著者 Trame, C.B, McKay, D.B. 登録日 2001-05-09 公開日 2001-08-08 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of Haemophilus influenzae HslU protein in crystals with one-dimensional disorder twinning. Acta Crystallogr.,Sect.D, 57, 2001
1IN4	THERMOTOGA MARITIMA RUVB HOLLIDAY JUNCTION BRANCH MIGRATION MOTOR 分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ... 著者 Putnam, C.D, Tainer, J.A. 登録日 2001-05-12 公開日 2001-08-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1IN8	THERMOTOGA MARITIMA RUVB T158V 分子名称: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB 著者 Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. 登録日 2001-05-12 公開日 2001-08-08 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1HQY	Nucleotide-Dependent Conformational Changes in a Protease-Associated ATPase HslU 分子名称: ADENOSINE-5'-DIPHOSPHATE, HEAT SHOCK LOCUS HSLU, HEAT SHOCK LOCUS HSLV 著者 Wang, J, Song, J.J, Seong, I.S, Franklin, M.C, Kamtekar, S, Eom, S.H, Chung, C.H. 登録日 2000-12-20 公開日 2001-11-14 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU. Structure, 9, 2001
1G41	CRYSTAL STRUCTURE OF HSLU HAEMOPHILUS INFLUENZAE 分子名称: ADENOSINE-5'-DIPHOSPHATE, HEAT SHOCK PROTEIN HSLU, SULFATE ION 著者 Trame, C.B, McKay, D.B. 登録日 2000-10-25 公開日 2000-11-22 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of Haemophilus influenzae HslU protein in crystals with one-dimensional disorder twinning. Acta Crystallogr.,Sect.D, 57, 2001

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