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5M30
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BU of 5m30 by Molmil
Structure of TssK from T6SS EAEC in complex with nanobody nb18
分子名称: Anti-vesicular stomatitis virus N VHH, Type VI secretion protein
著者Nguyen, V.S, Cambillau, C, Spinelli, C, Desmyter, A, Legrand, P, Cascales, E.
登録日2016-10-13
公開日2017-06-21
最終更新日2017-09-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Type VI secretion TssK baseplate protein exhibits structural similarity with phage receptor-binding proteins and evolved to bind the membrane complex.
Nat Microbiol, 2, 2017
3I2O
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BU of 3i2o by Molmil
Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T
分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(MA7)P*T)-3'), ...
著者Yu, B, Hunt, J.F.
登録日2009-06-29
公開日2009-08-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB.
Proc.Natl.Acad.Sci.USA, 106, 2009
7A6B
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BU of 7a6b by Molmil
1.33 A structure of human apoferritin obtained from Titan Mono- BCOR microscope
分子名称: Ferritin heavy chain, SODIUM ION
著者Yip, K.M, Fischer, N, Chari, A, Stark, H.
登録日2020-08-25
公開日2020-09-02
最終更新日2021-02-10
実験手法ELECTRON MICROSCOPY (1.33 Å)
主引用文献Atomic-resolution protein structure determination by cryo-EM.
Nature, 587, 2020
2OE5
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BU of 2oe5 by Molmil
1.5 A X-ray crystal structure of Apramycin complex with RNA fragment GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC containing the human ribosomal decoding A site: RNA construct with 3'-overhang
分子名称: APRAMYCIN, MAGNESIUM ION, RNA (5'-R(*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*CP*G)-3'), ...
著者Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J.
登録日2006-12-28
公開日2007-02-13
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Apramycin recognition by the human ribosomal decoding site.
Blood Cells Mol.Dis., 38, 2007
7EG2
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BU of 7eg2 by Molmil
Crystal structure of the apoAequorin complex with (S)-daCTZ
分子名称: (2~{S})-2-(hydroxymethyl)-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-3~{H}-inden-1-one, Aequorin-2
著者Tomabechi, Y, Shirouzu, M.
登録日2021-03-24
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
8QEO
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BU of 8qeo by Molmil
cryo-EM structure complex of Frizzled-7 and Clostridioides difficile toxin B
分子名称: Frizzled-7, Toxin B, ZINC ION
著者Kinsolving, J, Bous, J.
登録日2023-09-01
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Structural and functional insight into the interaction of Clostridioides difficile toxin B and FZD 7.
Cell Rep, 43, 2024
7U8K
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BU of 7u8k by Molmil
Magic Angle Spinning NMR Structure of Human Cofilin-2 Assembled on Actin Filaments
分子名称: Actin, alpha skeletal muscle, Cofilin-2
著者Kraus, J, Russell, R, Kudryashova, E, Xu, C, Katyal, N, Kudryashov, D, Perilla, J.R, Polenova, T.
登録日2022-03-08
公開日2023-08-16
最終更新日2024-02-28
実験手法SOLID-STATE NMR
主引用文献Magic angle spinning NMR structure of human cofilin-2 assembled on actin filaments reveals isoform-specific conformation and binding mode.
Nat Commun, 13, 2022
7E9H
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BU of 7e9h by Molmil
Cryo-EM structure of Gi-bound metabotropic glutamate receptor mGlu4
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-3, ...
著者Lin, S, Han, S, Zhao, Q, Wu, B.
登録日2021-03-04
公開日2021-06-23
最終更新日2021-07-07
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structures of G i -bound metabotropic glutamate receptors mGlu2 and mGlu4.
Nature, 594, 2021
7A97
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BU of 7a97 by Molmil
SARS-CoV-2 Spike Glycoprotein with 2 ACE2 Bound
分子名称: Angiotensin-converting enzyme 2, Spike glycoprotein
著者Benton, D.J, Wrobel, A.G, Rosenthal, P.B, Gamblin, S.J.
登録日2020-09-01
公開日2020-09-16
最終更新日2020-12-16
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion.
Nature, 588, 2020
3I3B
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BU of 3i3b by Molmil
E.coli (lacz) Beta-Galactosidase (M542A) in Complex with D-Galactopyranosyl-1-on
分子名称: Beta-galactosidase, D-galactonolactone, DIMETHYL SULFOXIDE, ...
著者Dugdale, M.L, Dymianiw, D, Minhas, B, Huber, R.E.
登録日2009-06-30
公開日2010-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Role of Met-542 as a guide for the conformational changes of Phe-601 that occur during the reaction of β-galactosidase (Escherichia coli).
Biochem.Cell Biol., 88, 2010
2OEX
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BU of 2oex by Molmil
Structure of ALIX/AIP1 V Domain
分子名称: Programmed cell death 6-interacting protein
著者Fisher, R.D, Zhai, Q, Robinson, H, Hill, C.P.
登録日2007-01-01
公開日2007-03-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.58 Å)
主引用文献Structural and Biochemical Studies of ALIX/AIP1 and Its Role in Retrovirus Budding
Cell(Cambridge,Mass.), 128, 2007
7EG3
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BU of 7eg3 by Molmil
Crystal structure of the apoAequorin complex with (S)-HM-daCTZ
分子名称: (2~{S})-6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-4-(phenylmethyl)-2,3-dihydroinden-1-one, Aequorin-2
著者Tomabechi, Y, Shirouzu, M.
登録日2021-03-24
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin.
Plos One, 16, 2021
8R1P
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BU of 8r1p by Molmil
Pim1 in complex with 6-bromobenzo[d]oxazol-2-amine and Pimtide
分子名称: 4-(4-aminostyryl)benzoic acid, Pimtide, Serine/threonine-protein kinase pim-1
著者Hochban, P.M.M, Heine, A, Diederich, W.E.
登録日2023-11-02
公開日2024-03-20
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献What doesn't fit is made to fit: Pim-1 kinase adapts to the configuration of stilbene-based inhibitors.
Arch Pharm, 357, 2024
2Z5Q
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BU of 2z5q by Molmil
Apo-Fr with intermediate content of Pd ion
分子名称: CADMIUM ION, Ferritin light chain, GLYCEROL, ...
著者Ueno, T, Hirata, K, Abe, M, Suzuki, M, Abe, S, Shimizu, N, Yamamoto, M, Takata, M, Watanabe, Y.
登録日2007-07-16
公開日2008-07-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Process of accumulation of metal ions on the interior surface of apo-ferritin: crystal structures of a series of apo-ferritins containing variable quantities of Pd(II) ions.
J.Am.Chem.Soc., 131, 2009
8R1N
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BU of 8r1n by Molmil
Pim1 in complex with 4-(4-hydroxyphenethyl)benzoic acid and Pimtide
分子名称: 4-(4-hydroxyphenethyl)benzoic acid, Pimtide, Serine/threonine-protein kinase pim-1
著者Hochban, P.M.M, Heine, A, Diederich, W.E.
登録日2023-11-02
公開日2024-03-20
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献What doesn't fit is made to fit: Pim-1 kinase adapts to the configuration of stilbene-based inhibitors.
Arch Pharm, 357, 2024
7E5V
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BU of 7e5v by Molmil
Crystal structure of Phm7 in complex with inhibitor
分子名称: Diels-Alderase, GLYCEROL, SULFATE ION, ...
著者Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
登録日2021-02-20
公開日2021-06-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021
2Z75
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T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate
分子名称: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
著者Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R.
登録日2007-08-15
公開日2007-09-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme
J.Mol.Biol., 373, 2007
7RHE
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BU of 7rhe by Molmil
Crystal Structure of ROK family protein from Burkholderia vietnamiensis G4
分子名称: ROK family protein
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2021-07-16
公開日2021-11-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of ROK family protein from Burkholderia vietnamiensis G4
to be published
2ODG
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BU of 2odg by Molmil
Complex of barrier-to-autointegration factor and LEM-domain of emerin
分子名称: Barrier-to-autointegration factor, Emerin
著者Clore, G.M, Cai, M.
登録日2006-12-22
公開日2007-03-13
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of the Barrier-to-Autointegration Factor-Emerin Complex.
J.Biol.Chem., 282, 2007
7LRM
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BU of 7lrm by Molmil
Structure of HIV-1 Reverse Transcriptase in complex with DNA, dCTP, and CA(2+) ion
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA/RNA (38-MER), ...
著者Hoang, A, Ruiz, F.X, Arnold, E.
登録日2021-02-16
公開日2022-02-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Structural basis of HIV inhibition by L-nucleosides: Opportunities for drug development and repurposing.
Drug Discov Today, 27, 2022
7R84
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BU of 7r84 by Molmil
Structure of mouse BAI1 (ADGRB1) TSR3 domain in P21 space group
分子名称: Vasculostatin-120, alpha-D-mannopyranose, beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose
著者Miao, Y, Jude, K.M, Garcia, K.C.
登録日2021-06-26
公開日2021-11-10
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.336 Å)
主引用文献RTN4/NoGo-receptor binding to BAI adhesion-GPCRs regulates neuronal development.
Cell, 184, 2021
2ZQ1
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BU of 2zq1 by Molmil
Exploring trypsin S3 pocket
分子名称: (S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclohexylamino)ethanoyl)pyrrolidine-2-carboxamide, CALCIUM ION, Cationic trypsin, ...
著者Brandt, T, Baum, B, Heine, A, Klebe, G.
登録日2008-08-03
公開日2009-08-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Congeneric but still distinct: how closely related trypsin ligands exhibit different thermodynamic and structural properties
J.Mol.Biol., 405, 2011
8QEN
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BU of 8qen by Molmil
cryo-EM structure of apo Clostridioides difficile toxin B
分子名称: Toxin B, ZINC ION
著者Kinsolving, J, Bous, J, Structural Genomics Consortium (SGC)
登録日2023-09-01
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural and functional insight into the interaction of Clostridioides difficile toxin B and FZD 7.
Cell Rep, 43, 2024
7E5U
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BU of 7e5u by Molmil
Crystal structure of Phm7
分子名称: CHLORIDE ION, Diels-Alderase, GLYCEROL, ...
著者Fujiyama, K, Kato, N, Kinugasa, K, Hino, T, Takahashi, S, Nagano, S.
登録日2021-02-20
公開日2021-06-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Molecular Basis for Two Stereoselective Diels-Alderases that Produce Decalin Skeletons*.
Angew.Chem.Int.Ed.Engl., 60, 2021
2ZR6
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BU of 2zr6 by Molmil
Crystal structure of a mutant PIN1 peptidyl-prolyl cis-trans isomerase
分子名称: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, SULFATE ION
著者Jobichen, C, Yih-Cherng, L, Sivaraman, J.
登録日2008-08-22
公開日2009-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural studies on PIN1 mutants
To be Published

224004

件を2024-08-21に公開中

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