PDB: 659 件ウェブページステータス検索Chemie searchBIRD

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3TSV	crystal structure of the third PDZ domain of the human ZO-1 MAGUK protein 分子名称: Tight junction protein ZO-1 著者 Nomme, J, Lavie, A. 登録日 2011-09-13 公開日 2011-10-12 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.989 Å) 主引用文献 The Src Homology 3 Domain Is Required for Junctional Adhesion Molecule Binding to the Third PDZ Domain of the Scaffolding Protein ZO-1. J.Biol.Chem., 286, 2011
4A8A	Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozyme 分子名称: LYSOZYME C, PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ 著者 Malet, H, Canellas, F, Sawa, J, Yan, J, Thalassinos, K, Ehrmann, M, Clausen, T, Saibil, H.R. 登録日 2011-11-20 公開日 2011-12-28 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (14.2 Å) 主引用文献 Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq Nat.Struct.Mol.Biol., 19, 2012
4A8B	Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes 分子名称: LYSOZYME C, PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ 著者 Malet, H, Canellas, F, Sawa, J, Yan, J, Thalassinos, K, Ehrmann, M, Clausen, T, Saibil, H.R. 登録日 2011-11-20 公開日 2012-01-11 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (13 Å) 主引用文献 Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq Nat.Struct.Mol.Biol., 19, 2012
4A8C	Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with a binding peptide 分子名称: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ 著者 Malet, H, Canellas, F, Sawa, J, Yan, J, Thalassinos, K, Ehrmann, M, Clausen, T, Saibil, H.R. 登録日 2011-11-20 公開日 2012-01-11 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq Nat.Struct.Mol.Biol., 19, 2012
4A8D	DegP dodecamer with bound OMP 分子名称: OUTER MEMBRANE PROTEIN C, PERIPLASMIC SERINE ENDOPROTEASE DEGP 著者 Malet, H, Krojer, T, Sawa, J, Schafer, E, Saibil, H.R, Ehrmann, M, Clausen, T. 登録日 2011-11-20 公開日 2012-01-11 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (28 Å) 主引用文献 Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq Nat.Struct.Mol.Biol., 19, 2012
4A9G	Symmetrized cryo-EM reconstruction of E. coli DegQ 24-mer in complex with beta-casein 分子名称: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ 著者 Malet, H, Canellas, F, Sawa, J, Yan, J, Thalassinos, K, Ehrmann, M, Clausen, T, Saibil, H.R. 登録日 2011-11-26 公開日 2012-01-11 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq Nat.Struct.Mol.Biol., 19, 2012
2LOB	PDZ Domain of CAL (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) 分子名称: Cystic fibrosis transmembrane conductance regulator, Golgi-associated PDZ and coiled-coil motif-containing protein 著者 Piserchio, A, Fellows, A, Madden, D.R, Mierke, D.F. 登録日 2012-01-20 公開日 2012-06-13 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Association of the cystic fibrosis transmembrane regulator with CAL: structural features and molecular dynamics. Biochemistry, 44, 2005
4E34	Crystal structure of CFTR Associated Ligand (CAL) PDZ domain bound to iCAL36 (ANSRWPTSII) peptide 分子名称: GLYCEROL, Golgi-associated PDZ and coiled-coil motif-containing protein, decameric peptide, ... 著者 Amacher, J.F, Beck, T, Madden, D.R. 登録日 2012-03-09 公開日 2012-12-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.395 Å) 主引用文献 Stereochemical Determinants of C-terminal Specificity in PDZ Peptide-binding Domains: A NOVEL CONTRIBUTION OF THE CARBOXYLATE-BINDING LOOP. J.Biol.Chem., 288, 2013
4E3B	Crystal structure of Tax-Interacting Protein-1 (TIP-1) PDZ domain bound to iCAL36-L (ANSRWPTSIL) peptide 分子名称: Tax1-binding protein 3, iCAL50 peptide 著者 Amacher, J.F, Madden, D.R. 登録日 2012-03-09 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Stereochemical Determinants of C-terminal Specificity in PDZ Peptide-binding Domains: A NOVEL CONTRIBUTION OF THE CARBOXYLATE-BINDING LOOP. J.Biol.Chem., 288, 2013
4E35	Crystal structure of CFTR Associated Ligand (CAL) PDZ domain bound to iCAL36-L (ANSRWPTSIL) peptide 分子名称: GLYCEROL, Golgi-associated PDZ and coiled-coil motif-containing protein, iCAL50 peptide 著者 Amacher, J.F, Madden, D.R. 登録日 2012-03-09 公開日 2012-12-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Stereochemical Determinants of C-terminal Specificity in PDZ Peptide-binding Domains: A NOVEL CONTRIBUTION OF THE CARBOXYLATE-BINDING LOOP. J.Biol.Chem., 288, 2013
4AMH	Influence of circular permutation on the folding pathway of a PDZ domain 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DISKS LARGE HOMOLOG 1, GLYCEROL 著者 Hultqvist, G, Punekar, A.S, Chi, C.N, Selmer, M, Gianni, S, Jemth, P. 登録日 2012-03-10 公開日 2012-12-05 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Tolerance of Protein Folding to a Circular Permutation in a Pdz Domain Plos One, 7, 2012
3VQF	Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein 分子名称: E3 ubiquitin-protein ligase LNX 著者 Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H. 登録日 2012-03-22 公開日 2013-03-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.199 Å) 主引用文献 Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase To be Published
3VQG	Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein 分子名称: C-terminal peptide from Immunoglobulin superfamily member 5, E3 ubiquitin-protein ligase LNX, SULFATE ION 著者 Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H. 登録日 2012-03-23 公開日 2013-03-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase To be Published
4F8K	Molecular analysis of the interaction between the prostacyclin receptor and the first PDZ domain of PDZK1 分子名称: Na(+)/H(+) exchange regulatory cofactor NHE-RF3, Prostacyclin receptor 著者 Kocher, O, Birrane, G, Kinsella, B.T, Mulvaney, E.P. 登録日 2012-05-17 公開日 2013-02-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Molecular Analysis of the Prostacyclin Receptor's Interaction with the PDZ1 Domain of Its Adaptor Protein PDZK1. Plos One, 8, 2013
2LUI	Structure of the PICK PDZ domain in complex with the DAT C-terminal 分子名称: PICK1 PDZ DOMAIN FUSED TO THE C10 DAT LIGAND 著者 Erlendsson, S, Rathje, M, Heidarsson, P.O, Poulsen, F.M, Madsen, K.L, Teilum, K, Gether, U. 登録日 2012-06-14 公開日 2013-06-19 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Protein interacting with C-kinase 1 (PICK1) binding promiscuity relies on unconventional PSD-95/discs-large/ZO-1 homology (PDZ) binding modes for nonclass II PDZ ligands. J.Biol.Chem., 289, 2014
4G69	Structure of the Human Discs Large 1 PDZ2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex 分子名称: Adenomatous polyposis coli protein, Disks large homolog 1 著者 Slep, K.C. 登録日 2012-07-18 公開日 2012-12-12 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the Human Discs Large 1 PDZ2- Adenomatous Polyposis Coli Cytoskeletal Polarity Complex: Insight into Peptide Engagement and PDZ Clustering. Plos One, 7, 2012
4GVD	Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with Syndecan1 Peptide 分子名称: 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID), CHLORIDE ION, SODIUM ION, ... 著者 Liu, X, Shepherd, T.R, Murray, A.M, Xu, Z, Fuentes, E.J. 登録日 2012-08-30 公開日 2013-03-13 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics. Structure, 21, 2013
4GVC	Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ in complex with phosphorylated Syndecan1 Peptide 分子名称: 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID), CHLORIDE ION, SODIUM ION, ... 著者 Liu, X, Shepherd, T.R, Murray, A.M, Xu, Z, Fuentes, E.J. 登録日 2012-08-30 公開日 2013-03-13 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics. Structure, 21, 2013
4H11	Interaction partners of PSD-93 studied by X-ray crystallography and fluorescent polarization spectroscopy 分子名称: ACETATE ION, Disks large homolog 2, SULFATE ION 著者 Fiorentini, M, Kastrup, J.S, Gajhede, M. 登録日 2012-09-10 公開日 2013-04-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Interaction partners of PSD-93 studied by X-ray crystallography and fluorescence polarization spectroscopy. Acta Crystallogr.,Sect.D, 69, 2013
4HOP	Crystal structure of the computationally designed NNOS-Syntrophin complex 分子名称: Alpha-1-syntrophin, Nitric oxide synthase, brain 著者 Harwood, I.M, Melero, C, Ollikainen, N, Kortemme, T. 登録日 2012-10-22 公開日 2013-11-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition. Proc.Natl.Acad.Sci.USA, 111, 2014
2M0T	Structural characterization of the extended PDZ1 domain from NHERF1 分子名称: Na(+)/H(+) exchange regulatory cofactor NHE-RF1 著者 Bhattacharya, S, Ju, J.H, Cowburn, D, Bu, Z. 登録日 2012-11-06 公開日 2013-04-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1. J.Mol.Biol., 425, 2013
2M0U	Complex structure of C-terminal CFTR peptide and extended PDZ1 domain from NHERF1 分子名称: C-terminal CFTR peptide, Na(+)/H(+) exchange regulatory cofactor NHE-RF1 著者 Bhattacharya, S, Ju, J.H, Cowburn, D, Bu, Z. 登録日 2012-11-06 公開日 2013-04-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1. J.Mol.Biol., 425, 2013
2M0V	Complex structure of C-terminal CFTR peptide and extended PDZ2 domain from NHERF1 分子名称: C-terminal CFTR peptide, Na(+)/H(+) exchange regulatory cofactor NHE-RF1 著者 Bhattacharya, S, Ju, J.H, Cowburn, D, Bu, Z. 登録日 2012-11-06 公開日 2013-04-24 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1. J.Mol.Biol., 425, 2013
2M10	trans form of a photoswitchable PDZ domain crosslinked with an azobenzene derivative 分子名称: 3,3'-(E)-diazene-1,2-diylbis{6-[(chloroacetyl)amino]benzenesulfonic acid}, Tyrosine-protein phosphatase non-receptor type 13 著者 Walser, R. 登録日 2012-11-09 公開日 2013-07-03 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Kinetic response of a photoperturbed allosteric protein. Proc.Natl.Acad.Sci.USA, 110, 2013
2M0Z	cis form of a photoswitchable PDZ domain crosslinked with an azobenzene derivative 分子名称: 3,3'-(E)-diazene-1,2-diylbis{6-[(chloroacetyl)amino]benzenesulfonic acid}, Tyrosine-protein phosphatase non-receptor type 13 著者 Walser, R, Zerbe, O, Hamm, P. 登録日 2012-11-09 公開日 2013-07-03 最終更新日 2013-08-07 実験手法 SOLUTION NMR 主引用文献 Kinetic response of a photoperturbed allosteric protein. Proc.Natl.Acad.Sci.USA, 110, 2013

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