PDB: 463 件ウェブページステータス検索Chemie searchBIRD

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3DIR	Crystallization of the Thermotoga maritima lysine riboswitch bound to N6-1-iminoethyl-L-Lysine 分子名称: N~6~-[(1Z)-ethanimidoyl]-L-lysine, POTASSIUM ION, RNA (174-MER), ... 著者 Serganov, A.A. 登録日 2008-06-20 公開日 2008-09-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature, 455, 2008
3DIM	Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak 分子名称: CESIUM ION, ISOPROPYL ALCOHOL, LYSINE, ... 著者 Serganov, A.A. 登録日 2008-06-20 公開日 2008-09-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature, 455, 2008
3DJ2	Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Tl+ Soak 分子名称: ISOPROPYL ALCOHOL, LYSINE, RNA (174-MER), ... 著者 Serganov, A.A. 登録日 2008-06-21 公開日 2008-09-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature, 455, 2008
3DIL	Crystal structure of the Thermotoga maritima lysine riboswitch bound to lysine 分子名称: ISOPROPYL ALCOHOL, LYSINE, MAGNESIUM ION, ... 著者 Serganov, A.A. 登録日 2008-06-20 公開日 2008-09-16 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature, 455, 2008
3DIS	Crystallization of the Thermotoga maritima lysine riboswitch in free form 分子名称: ISOPROPYL ALCOHOL, RNA (174-MER), SODIUM ION 著者 Serganov, A.A. 登録日 2008-06-20 公開日 2008-09-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature, 455, 2008
3DJ0	Crystallization of the Thermotoga maritima lysine riboswitch bound to L-4-oxalysine 分子名称: O-(2-aminoethyl)-L-serine, POTASSIUM ION, RNA (174-MER), ... 著者 Serganov, A.A. 登録日 2008-06-21 公開日 2008-09-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature, 455, 2008
3PDR	Crystal structure of manganese bound M-box RNA 分子名称: M-box Riboswitch RNA, MANGANESE (II) ION, POTASSIUM ION 著者 Ramesh, A, Winkler, W.C. 登録日 2010-10-23 公開日 2011-02-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.853 Å) 主引用文献 Insights into Metalloregulation by M-box Riboswitch RNAs via Structural Analysis of Manganese-Bound Complexes. J.Mol.Biol., 407, 2011
1Y26	A-riboswitch-adenine complex 分子名称: ADENINE, MAGNESIUM ION, Vibrio vulnificus A-riboswitch 著者 Serganov, A, Yuan, Y.R, Patel, D.J. 登録日 2004-11-20 公開日 2004-12-28 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis for Discriminative Regulation of Gene Expression by Adenine- and Guanine-Sensing mRNAs Chem.Biol., 11, 2004
5C45	Selective Small Molecule Inhibition of the FMN Riboswitch 分子名称: (6M)-2-[(3S)-1-{[2-(methylamino)pyrimidin-5-yl]methyl}piperidin-3-yl]-6-(thiophen-2-yl)pyrimidin-4-ol, FMN Riboswitch, MAGNESIUM ION, ... 著者 Fischmann, T.O. 登録日 2015-06-17 公開日 2015-10-07 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.93 Å) 主引用文献 Selective small-molecule inhibition of an RNA structural element. Nature, 526, 2015
3DS7	Structure of an RNA-2'-deoxyguanosine complex 分子名称: 2'-DEOXY-GUANOSINE, 67-MER, ACETATE ION, ... 著者 Edwards, A.L, Batey, R.T. 登録日 2008-07-11 公開日 2009-02-17 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 A structural basis for the recognition of 2'-deoxyguanosine by the purine riboswitch. J.Mol.Biol., 385, 2009
8F3C	Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand 分子名称: DNA (38-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... 著者 Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. 登録日 2022-11-09 公開日 2023-06-21 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
8G00	Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand 分子名称: DNA (31-MER), DNA (39-mer), DNA-directed RNA polymerase subunit alpha, ... 著者 Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G. 登録日 2023-01-31 公開日 2023-06-21 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand. Nat.Struct.Mol.Biol., 30, 2023
7KVV	Crystal structure of Squash RNA aptamer in complex with DFHBI-1T 分子名称: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, Squash RNA aptamer bound to DFHO 著者 Truong, L, Ferre-D'Amare, A.R. 登録日 2020-11-28 公開日 2022-01-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nat.Chem.Biol., 18, 2022
7KVT	Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ... 著者 Truong, L, Ferre-D'Amare, A.R. 登録日 2020-11-28 公開日 2022-01-19 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nat.Chem.Biol., 18, 2022
7KVU	Crystal structure of Squash RNA aptamer in complex with DFHBI-1T 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, POTASSIUM ION, ... 著者 Truong, L, Ferre-D'Amare, A.R. 登録日 2020-11-28 公開日 2022-01-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold. Nat.Chem.Biol., 18, 2022
4B5R	SAM-I riboswitch bearing the H. marismortui K-t-7 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Daldrop, P, Lilley, D.M.J. 登録日 2012-08-07 公開日 2013-01-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 The Plasticity of a Structural Motif in RNA: Structural Polymorphism of a Kink Turn as a Function of its Environment. RNA, 19, 2013
5FK4	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU 分子名称: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-14 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FK1	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG 分子名称: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-14 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FK5	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-14 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.315 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FK3	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-14 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FK2	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG 分子名称: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-14 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FKF	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-15 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FKD	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-15 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FKG	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-15 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016
5FKH	SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU 分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ... 著者 Huang, L, Lilley, D.M.J. 登録日 2015-10-15 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

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