Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5FKG
DownloadVisualize
BU of 5fkg by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-15
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
5FKH
DownloadVisualize
BU of 5fkh by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-15
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
4MGN
DownloadVisualize
BU of 4mgn by Molmil
Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA
分子名称: MAGNESIUM ION, glyQS T box riboswitch, tRNA-glycine
著者Grigg, J.C, Ke, A.
登録日2013-08-28
公開日2013-10-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA.
Structure, 21, 2013
5FK5
DownloadVisualize
BU of 5fk5 by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-14
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.315 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
5FK2
DownloadVisualize
BU of 5fk2 by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG
分子名称: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH
著者Huang, L, Lilley, D.M.J.
登録日2015-10-14
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
5FKD
DownloadVisualize
BU of 5fkd by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-15
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
5FKE
DownloadVisualize
BU of 5fke by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-15
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
5FKF
DownloadVisualize
BU of 5fkf by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-15
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
6CK4
DownloadVisualize
BU of 6ck4 by Molmil
G96A mutant of the PRPP riboswitch from T. mathranii bound to ppGpp
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5',3'-TETRAPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Reiss, C.W, Knappenberger, A.J, Strobel, S.A.
登録日2018-02-27
公開日2018-06-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.097 Å)
主引用文献Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA.
Elife, 7, 2018
5FK6
DownloadVisualize
BU of 5fk6 by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-14
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
8G2W
DownloadVisualize
BU of 8g2w by Molmil
Cryo-EM structure of 3DVA component 2 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
分子名称: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
登録日2023-02-06
公開日2023-06-21
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8F3C
DownloadVisualize
BU of 8f3c by Molmil
Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
分子名称: DNA (38-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
登録日2022-11-09
公開日2023-06-21
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G1S
DownloadVisualize
BU of 8g1s by Molmil
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
分子名称: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
登録日2023-02-02
公開日2023-06-21
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G00
DownloadVisualize
BU of 8g00 by Molmil
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase minus preQ1 ligand
分子名称: DNA (31-MER), DNA (39-mer), DNA-directed RNA polymerase subunit alpha, ...
著者Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
登録日2023-01-31
公開日2023-06-21
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
7KVV
DownloadVisualize
BU of 7kvv by Molmil
Crystal structure of Squash RNA aptamer in complex with DFHBI-1T
分子名称: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, Squash RNA aptamer bound to DFHO
著者Truong, L, Ferre-D'Amare, A.R.
登録日2020-11-28
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold.
Nat.Chem.Biol., 18, 2022
7KVT
DownloadVisualize
BU of 7kvt by Molmil
Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
著者Truong, L, Ferre-D'Amare, A.R.
登録日2020-11-28
公開日2022-01-19
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.73 Å)
主引用文献The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold.
Nat.Chem.Biol., 18, 2022
7KVU
DownloadVisualize
BU of 7kvu by Molmil
Crystal structure of Squash RNA aptamer in complex with DFHBI-1T
分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, MAGNESIUM ION, POTASSIUM ION, ...
著者Truong, L, Ferre-D'Amare, A.R.
登録日2020-11-28
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.68 Å)
主引用文献The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold.
Nat.Chem.Biol., 18, 2022
4B5R
DownloadVisualize
BU of 4b5r by Molmil
SAM-I riboswitch bearing the H. marismortui K-t-7
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Daldrop, P, Lilley, D.M.J.
登録日2012-08-07
公開日2013-01-30
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献The Plasticity of a Structural Motif in RNA: Structural Polymorphism of a Kink Turn as a Function of its Environment.
RNA, 19, 2013
2KXM
DownloadVisualize
BU of 2kxm by Molmil
Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex
分子名称: RIBOSTAMYCIN, RNA (27-MER)
著者Duchardt-Ferner, E, Weigand, J.E, Ohlenschlager, O, Schmidtke, S.R, Suess, B, Wohnert, J.
登録日2010-05-10
公開日2011-04-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Highly modular structure and ligand binding by conformational capture in a minimalistic riboswitch.
Angew.Chem.Int.Ed.Engl., 49, 2010
4AOB
DownloadVisualize
BU of 4aob by Molmil
SAM-I riboswitch containing the T. solenopsae Kt-23 in complex with S- adenosyl methionine
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Schroeder, K.T, Daldrop, P, McPhee, S.A, Lilley, D.M.J.
登録日2012-03-25
公開日2012-05-09
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structure and Folding of a Rare, Natural Kink Turn in RNA with an Aa Pair at the 2B2N Position.
RNA, 18, 2012
2QBZ
DownloadVisualize
BU of 2qbz by Molmil
Structure of the M-Box Riboswitch Aptamer Domain
分子名称: M-Box RNA, ykoK riboswitch aptamer, MAGNESIUM ION, ...
著者Dann III, C.E, Winkler, W.C.
登録日2007-06-18
公開日2007-09-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure and mechanism of a metal-sensing regulatory RNA
Cell(Cambridge,Mass.), 130, 2007
8G4W
DownloadVisualize
BU of 8g4w by Molmil
Cryo-EM consensus structure of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, DNA (31-MER), DNA (39-mer), ...
著者Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
登録日2023-02-10
公開日2023-06-21
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G8Z
DownloadVisualize
BU of 8g8z by Molmil
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, DNA (31-MER), DNA (39-MER), ...
著者Porta, J.C, Ohi, M.D, Walter, N.G, Frank, A.T, Deb, I, Meze, K.
登録日2023-02-20
公開日2023-06-21
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8G7E
DownloadVisualize
BU of 8g7e by Molmil
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC (paused elongation complex) RNA Polymerase plus preQ1 ligand
分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, DNA (31-MER), DNA (39-mer), ...
著者Porta, J.C, Chauvier, A, Deb, I, Ellinger, E, Frank, A.T, Meze, K, Ohi, M.D, Walter, N.G.
登録日2023-02-16
公開日2023-06-21
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand.
Nat.Struct.Mol.Biol., 30, 2023
8UTA
DownloadVisualize
BU of 8uta by Molmil
yjdF riboswitch from R. gauvreauii in complex with proflavine bound to Fab BL3-6 S97N
分子名称: Fab BL3-6 S97N heavy chain, Fab BL3-6 S97N light chain, MAGNESIUM ION, ...
著者Krochmal, D, Lewicka, A, Piccirilli, J.A.
登録日2023-10-30
公開日2024-04-10
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural basis for promiscuity in ligand recognition by yjdF riboswitch.
Cell Discov, 10, 2024

221716

件を2024-06-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon