PDB: 97814 件ウェブページステータス検索Chemie searchBIRD

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5ZCY	Crystal structure of archaeal translation initiation factor 1 at 1.5 Angstroms resolution 分子名称: NITRATE ION, NITRITE ION, Protein translation factor SUI1 homolog 著者 Gogoi, P, Kanaujia, S.P. 登録日 2018-02-22 公開日 2018-05-02 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Archaeal and eukaryal translation initiation factor 1 differ in their RNA interacting loops. FEBS Lett., 592, 2018
5YUB	Crystal structure of voltage-gated sodium channel NavAb E32Q mutant 分子名称: CALCIUM ION, CHAPSO, DODECYL-BETA-D-MALTOSIDE, ... 著者 Irie, K, Shimomura, T, Fujiyoshi, Y. 登録日 2017-11-21 公開日 2017-12-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.40004 Å) 主引用文献 Structural insight on the voltage dependence of prokaryotic voltage gated sodium channel NavAb. FEBS Lett., 2017
5EXO	Crystal structure of Human galectin-3 CRD in complex with methyl 2-O-acetyl-3-O-(2H-chromene-3-yl-methyl)-a-D-galactopyranoside inhibitor 分子名称: CHLORIDE ION, Galectin-3, [(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2-methoxy-5-oxidanyl-4-[(2-oxidanylidenechromen-3-yl)methoxy]oxan-3-yl] ethanoate 著者 Collins, P.M, Blanchard, H. 登録日 2015-11-23 公開日 2016-10-05 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.502 Å) 主引用文献 A Selective Galactose-Coumarin-Derived Galectin-3 Inhibitor Demonstrates Involvement of Galectin-3-glycan Interactions in a Pulmonary Fibrosis Model. J.Med.Chem., 59, 2016
3KH5	Crystal Structure of Protein MJ1225 from Methanocaldococcus jannaschii, a putative archaeal homolog of g-AMPK. 分子名称: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, ... 著者 Gomez Garcia, I, Oyenarte, I, Martinez-Cruz, L.A. 登録日 2009-10-30 公開日 2010-04-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The crystal structure of protein MJ1225 from Methanocaldococcus jannaschii shows strong conservation of key structural features seen in the eukaryal gamma-AMPK. J.Mol.Biol., 65, 2010
3ZEU	Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer bound to ATPgammaS 分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... 著者 Nichols, C.E, Lamb, H.K, Thompson, P, El Omari, K, Lockyer, M, Charles, I, Hawkins, A.R, Stammers, D.K. 登録日 2012-12-07 公開日 2013-03-20 最終更新日 2017-03-29 実験手法 X-RAY DIFFRACTION (1.653 Å) 主引用文献 Crystal Structure of the Dimer of Two Essential Salmonella Typhimurium Proteins, Ygjd & Yeaz and Calorimetric Evidence for the Formation of a Ternary Ygjd-Yeaz-Yjee Complex. Protein Sci., 22, 2013
5FO1	E301A mutant of FAD synthetase from Corynebacterium ammoniagenes 分子名称: PYROPHOSPHATE, RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF, SULFATE ION 著者 Martinez-Julvez, M, Herguedas, B, Milagros, M. 登録日 2015-11-17 公開日 2016-11-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 The trimer interface in the quaternary structure of the bifunctional prokaryotic FAD synthetase from Corynebacterium ammoniagenes. Sci Rep, 7, 2017
1M6H	Human glutathione-dependent formaldehyde dehydrogenase 分子名称: Glutathione-dependent formaldehyde dehydrogenase, PHOSPHATE ION, POTASSIUM ION, ... 著者 Sanghani, P.C, Robinson, H, Bosron, W.F, Hurley, T.D. 登録日 2002-07-16 公開日 2002-07-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Human glutathione-dependent formaldehyde dehydrogenase. Structures of apo, binary, and inhibitory ternary complexes. Biochemistry, 41, 2002
8FE8	Crystal Structure of HIV-1 RT in Complex with the non-nucleoside inhibitor 18b1 分子名称: 1,2-ETHANEDIOL, 5-[(4-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenoxy}pyrimidin-2-yl)amino]-2-[4-(methanesulfonyl)piperazin-1-yl]benzonitrile, Reverse transcriptase p51, ... 著者 Rumrill, S, Ruiz, F.X, Arnold, E. 登録日 2022-12-05 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Discovery of diarylpyrimidine derivatives bearing piperazine sulfonyl as potent HIV-1 nonnucleoside reverse transcriptase inhibitors. Commun Chem, 6, 2023
5FO0	D298E mutant of FAD synthetase from Corynebacterium ammoniagenes 分子名称: PYROPHOSPHATE, RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF, SULFATE ION 著者 Martinez-Julvez, M, Herguedas, B, Milagros, M. 登録日 2015-11-17 公開日 2016-11-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 The trimer interface in the quaternary structure of the bifunctional prokaryotic FAD synthetase from Corynebacterium ammoniagenes. Sci Rep, 7, 2017
1P68	Solution structure of S-824, a de novo designed four helix bundle 分子名称: De novo designed protein S-824 著者 Wei, Y, Kim, S, Fela, D, Baum, J, Hecht, M.H. 登録日 2003-04-29 公開日 2003-11-11 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a de novo protein from a designed combinatorial library. Proc.Natl.Acad.Sci.Usa, 100, 2003
5X4J	The crystal structure of Pyrococcus furiosus RecJ (Zn-soaking) 分子名称: CHLORIDE ION, Uncharacterized protein, ZINC ION 著者 Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P. 登録日 2017-02-13 公開日 2018-02-14 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45. Nucleic Acids Res., 45, 2017
5X4K	The complex crystal structure of Pyrococcus furiosus RecJ and CMP 分子名称: CYTIDINE-5'-MONOPHOSPHATE, Uncharacterized protein, ZINC ION 著者 Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P. 登録日 2017-02-13 公開日 2018-02-14 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.749 Å) 主引用文献 The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45. Nucleic Acids Res., 45, 2017
5X4H	The crystal structure of Pyrococcus furiosus RecJ (wild-type) 分子名称: MAGNESIUM ION, Uncharacterized protein 著者 Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P. 登録日 2017-02-13 公開日 2018-02-14 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45. Nucleic Acids Res., 45, 2017
3HDI	Crystal structure of Bacillus halodurans metallo peptidase 分子名称: COBALT (II) ION, Processing protease, SULFATE ION, ... 著者 Aleshin, A, Gramatikova, S, Strongin, A.Y, Stec, B, Liddington, R.C, Smith, J.W. 登録日 2009-05-07 公開日 2009-12-08 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal and solution structures of a prokaryotic M16B peptidase: an open and shut case. Structure, 17, 2009
3LFZ	Crystal Structure of Protein MJ1225 from Methanocaldococcus jannaschii, a putative archaeal homolog of g-AMPK. 分子名称: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Gomez-Garcia, I, Oyenarte, I, Kortazar, D, Martinez-Cruz, L.A. 登録日 2010-01-19 公開日 2010-04-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structure of protein MJ1225 from Methanocaldococcus jannaschii shows strong conservation of key structural features seen in the eukaryal gamma-AMPK. J.Mol.Biol., 65, 2010
5X4I	Pyrococcus furiosus RecJ (D83A, Mn-soaking) 分子名称: CHLORIDE ION, MANGANESE (II) ION, Uncharacterized protein 著者 Li, M.J, Yi, G.S, Yu, F, Zhou, H, Chen, J.N, Xu, C.Y, Wang, F.P, Xiao, X, He, J.H, Liu, X.P. 登録日 2017-02-13 公開日 2018-02-14 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.092 Å) 主引用文献 The crystal structure of Pyrococcus furiosus RecJ implicates it as an ancestor of eukaryotic Cdc45. Nucleic Acids Res., 45, 2017
4FSE	crystal structure of beta-site app-cleaving enzyme 1 (bace-wt) complex with N-(N-(4-amino-3,5- dichlorobenzyl)carbamimidoyl)-3-(4-methoxyphenyl)-5- methyl-4-isothiazolecarboxamide 分子名称: Beta-secretase 1, IODIDE ION, N-[N-(4-amino-3,5-dichlorobenzyl)carbamimidoyl]-3-(4-methoxyphenyl)-5-methyl-1,2-thiazole-4-carboxamide 著者 Muckelbauer, J.K. 登録日 2012-06-27 公開日 2012-10-10 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Acyl guanidine inhibitors of beta-secretase (BACE-1): optimization of a micromolar hit to a nanomolar lead via iterative solid- and solution-phase library synthesis J.Med.Chem., 55, 2012
7JRV	Phospholipase D engineered mutant bound to phosphatidic acid (30 minute soak) 分子名称: (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ... 著者 Vrielink, A, Samantha, A. 登録日 2020-08-13 公開日 2021-04-28 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JRB	Phospholipase D engineered mutant 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Phospholipase D 著者 Vrielink, A, Samantha, A. 登録日 2020-08-12 公開日 2021-04-28 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.493 Å) 主引用文献 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JS5	Phospholipase D engineered mutant (TNYR) inactive enzyme (H168A) bound to 1-inositol phosphate 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D-MYO-INOSITOL-1-PHOSPHATE, GLYCEROL, ... 著者 Vrielink, A, Samantha, A. 登録日 2020-08-13 公開日 2021-04-28 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JRW	Phospholipase D engineered mutant bound to phosphatidic acid (5 day soak) 分子名称: (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ... 著者 Vrielink, A, Samantha, A. 登録日 2020-08-13 公開日 2021-04-28 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JS7	Phospholipase D engineered mutant (TNYR) H442 covalent adduct with 1-inositol phosphate 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, D-MYO-INOSITOL-1-PHOSPHATE, GLYCEROL, ... 著者 Vrielink, A, Samantha, A. 登録日 2020-08-13 公開日 2021-04-28 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JRU	Phospholipase D engineered mutant bound to phosphatidic acid (8 hour soak) 分子名称: (2R)-3-(phosphonooxy)propane-1,2-diyl dibutanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ... 著者 Vrielink, A, Samantha, A. 登録日 2020-08-13 公開日 2021-04-28 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JRC	Phospholipase D engineered mutant in complex with phosphate 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, PHOSPHATE ION, ... 著者 Vrielink, A, Samantha, A. 登録日 2020-08-12 公開日 2021-04-28 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Structures of an engineered phospholipase D with specificity for secondary alcohol transphosphatidylation: insights into plasticity of substrate binding and activation. Biochem.J., 478, 2021
7JQQ	The bacteriophage Phi-29 viral genome packaging motor assembly 分子名称: DNA (60-MER), DNA packaging protein, MAGNESIUM ION, ... 著者 White, M.A, Woodson, M, Morais, M.C. 登録日 2020-08-11 公開日 2021-05-19 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 A viral genome packaging motor transitions between cyclic and helical symmetry to translocate dsDNA. Sci Adv, 7, 2021

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