Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DG9
DownloadVisualize
BU of 1dg9 by Molmil
CRYSTAL STRUCTURE OF BOVINE LOW MOLECULAR WEIGHT PTPASE COMPLEXED WITH HEPES
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, TYROSINE PHOSPHATASE
著者Zhang, M, Zhou, M, Van Etten, R.L, Stauffacher, C.V.
登録日1999-11-23
公開日1999-12-08
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of bovine low molecular weight phosphotyrosyl phosphatase complexed with the transition state analog vanadate.
Biochemistry, 36, 1997
3QWO
DownloadVisualize
BU of 3qwo by Molmil
Crystal structure of a motavizumab epitope-scaffold bound to motavizumab Fab
分子名称: 1,2-ETHANEDIOL, SULFATE ION, motavizumab epitope scaffold, ...
著者McLellan, J.S, Kwong, P.D.
登録日2011-02-28
公開日2011-05-04
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Design and characterization of epitope-scaffold immunogens that present the motavizumab epitope from respiratory syncytial virus.
J.Mol.Biol., 409, 2011
258L
DownloadVisualize
BU of 258l by Molmil
AN ADAPTABLE METAL-BINDING SITE ENGINEERED INTO T4 LYSOZYME
分子名称: CHLORIDE ION, LYSOZYME, ZINC ION
著者Wray, J.W, Baase, W.A, Ostheimer, G.J, Matthews, B.W.
登録日1999-01-05
公開日2000-09-11
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Use of a non-rigid region in T4 lysozyme to design an adaptable metal-binding site.
Protein Eng., 13, 2000
1IAC
DownloadVisualize
BU of 1iac by Molmil
REFINED 1.8 ANGSTROMS X-RAY CRYSTAL STRUCTURE OF ASTACIN, A ZINC-ENDOPEPTIDASE FROM THE CRAYFISH ASTACUS ASTACUS L. STRUCTURE DETERMINATION, REFINEMENT, MOLECULAR STRUCTURE AND COMPARISON WITH THERMOLYSIN
分子名称: ASTACIN, MERCURY (II) ION
著者Gomis-Rueth, F.-X, Stoecker, W, Bode, W.
登録日1994-05-09
公開日1994-08-31
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Refined 1.8 A X-ray crystal structure of astacin, a zinc-endopeptidase from the crayfish Astacus astacus L. Structure determination, refinement, molecular structure and comparison with thermolysin.
J.Mol.Biol., 229, 1993
4G7F
DownloadVisualize
BU of 4g7f by Molmil
Crystal Structure of Enolase from Trypanosoma Cruzi
分子名称: 1,2-ETHANEDIOL, Enolase, MAGNESIUM ION
著者Craig, T.K, Edwards, T.E, Staker, B, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2012-07-20
公開日2012-08-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Enolase from Trypanosoma Cruzi
To be Published
1ICE
DownloadVisualize
BU of 1ice by Molmil
STRUCTURE AND MECHANISM OF INTERLEUKIN-1BETA CONVERTING ENZYME
分子名称: INTERLEUKIN-1 BETA CONVERTING ENZYME, TETRAPEPTIDE ALDEHYDE
著者Wilson, K.P, Griffith, J.P, Kim, E.E, Navia, M.A.
登録日1994-09-29
公開日1995-07-28
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure and mechanism of interleukin-1 beta converting enzyme.
Nature, 370, 1994
2JN5
DownloadVisualize
BU of 2jn5 by Molmil
Solution Structure of a Dodecapeptide from Alpha-Synuclein Bound with Synphilin-1
分子名称: Alpha-synuclein
著者Zhou, C.J, Hu, H.Y, Lin, D.H.
登録日2006-12-28
公開日2008-01-22
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Interaction with synphilin-1 promotes inclusion formation of alpha-synuclein: mechanistic insights and pathological implication.
Faseb J., 24, 2010
3AOK
DownloadVisualize
BU of 3aok by Molmil
Crystal structure of sweet-tasting protein thaumatin II
分子名称: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin-2
著者Masuda, T, Mikami, B, Kitabatake, N.
登録日2010-10-01
公開日2011-07-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Crystal structure of the sweet-tasting protein thaumatin II at 1.27A
Biochem.Biophys.Res.Commun., 410, 2011
3R2Y
DownloadVisualize
BU of 3r2y by Molmil
MK2 kinase bound to Compound 1
分子名称: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,5,6,7-TETRAHYDRO-4H-PYRROLO[3,2-C]PYRIDIN-4-ONE, MALONATE ION, MAP kinase-activated protein kinase 2
著者Oubrie, A, Leonard, P.
登録日2011-03-15
公開日2011-05-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure-based lead identification of ATP-competitive MK2 inhibitors.
Bioorg.Med.Chem.Lett., 21, 2011
3AOX
DownloadVisualize
BU of 3aox by Molmil
X-ray crystal structure of human anaplastic lymphoma kinase in complex with CH5424802
分子名称: 1,2-ETHANEDIOL, 9-ethyl-6,6-dimethyl-8-[4-(morpholin-4-yl)piperidin-1-yl]-11-oxo-6,11-dihydro-5H-benzo[b]carbazole-3-carbonitrile, ALK tyrosine kinase receptor
著者Nagel, S, Moertl, M, Jestel, A, Fukami, T.A.
登録日2010-10-08
公開日2011-05-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献CH5424802, a selective ALK inhibitor capable of blocking the resistant gatekeeper mutant
Cancer Cell, 19, 2011
4FTD
DownloadVisualize
BU of 4ftd by Molmil
Crystal structure of a DUF4623 family protein (BACEGG_03550) from Bacteroides eggerthii DSM 20697 at 1.91 A resolution
分子名称: GLYCEROL, Uncharacterized protein
著者Joint Center for Structural Genomics (JCSG)
登録日2012-06-27
公開日2012-08-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Crystal structure of a hypothetical protein (BACEGG_03550) from Bacteroides eggerthii DSM 20697 at 1.91 A resolution (CASP Target)
To be Published
2JMR
DownloadVisualize
BU of 2jmr by Molmil
NMR structure of the E. coli type 1 pilus subunit FimF
分子名称: fimF
著者Gossert, A.D, Bettendorff, P, Puorger, C, Vetsch, M, Herrmann, T, Fiorito, F, Hiller, S, Glockshuber, R, Wuthrich, K.
登録日2006-11-29
公開日2007-10-30
最終更新日2024-11-06
実験手法SOLUTION NMR
主引用文献NMR structure of the Escherichia coli type 1 pilus subunit FimF and its interactions with other pilus subunits.
J.Mol.Biol., 375, 2008
5SRY
DownloadVisualize
BU of 5sry by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5265428218
分子名称: 1-[(7-fluoro-9H-pyrimido[4,5-b]indol-4-yl)amino]pyrrolidin-2-one, Non-structural protein 3
著者Correy, G.J, Fraser, J.S.
登録日2022-06-09
公開日2022-07-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
4G1B
DownloadVisualize
BU of 4g1b by Molmil
X-ray structure of yeast flavohemoglobin in complex with econazole
分子名称: 1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-(2,4-DICHLOROPHENYL)ETHYL]-1H-IMIDAZOLE, FLAVIN-ADENINE DINUCLEOTIDE, Flavohemoglobin, ...
著者El Hammi, E, Warkentin, E, Demmer, U, Baciou, L, Ermler, U.
登録日2012-07-10
公開日2012-11-14
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Active site analysis of yeast flavohemoglobin based on its structure with a small ligand or econazole.
Febs J., 279, 2012
1R2R
DownloadVisualize
BU of 1r2r by Molmil
CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
著者Aparicio, R, Ferreira, S.T, Polikarpov, I.
登録日2003-09-29
公開日2003-12-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Closed conformation of the active site loop of rabbit muscle triosephosphate isomerase in the absence of substrate: evidence of conformational heterogeneity.
J.Mol.Biol., 334, 2003
3R0X
DownloadVisualize
BU of 3r0x by Molmil
Crystal structure of Selenomethionine incorporated apo D-serine deaminase from Salmonella tyhimurium
分子名称: 1,2-ETHANEDIOL, D-serine dehydratase, SODIUM ION, ...
著者Bharath, S.R, Shveta, B, Savithri, H.S, Murthy, M.R.N.
登録日2011-03-09
公開日2011-06-29
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal structures of open and closed forms of D-serine deaminase from Salmonella typhimurium - implications on substrate specificity and catalysis
Febs J., 2011
5SOW
DownloadVisualize
BU of 5sow by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000118179920
分子名称: 1-{2-[(9H-purin-6-yl)sulfanyl]ethyl}pyrrolidin-2-one, Non-structural protein 3
著者Correy, G.J, Fraser, J.S.
登録日2022-06-09
公開日2022-07-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
5SPN
DownloadVisualize
BU of 5spn by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with FRESH00010608284
分子名称: 1-cyclopentyl-3-methyl-N-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazole-5-sulfonamide, Non-structural protein 3
著者Correy, G.J, Fraser, J.S.
登録日2022-06-09
公開日2022-07-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
5SET
DownloadVisualize
BU of 5set by Molmil
CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 10 IN COMPLEX WITH c1(cc(nn1C)c2ccccn2)NC(=O)c3c(ccc(n3)C4CC4)Nc5cncnc5, micromolar IC50=>1.66968
分子名称: 6-cyclopropyl-N-[1-methyl-3-(pyridin-2-yl)-1H-pyrazol-5-yl]-3-[(pyrimidin-5-yl)amino]pyridine-2-carboxamide, MAGNESIUM ION, ZINC ION, ...
著者Joseph, C, Groebke-Zbinden, K, Benz, J, Schlatter, D, Rudolph, M.G.
登録日2022-01-21
公開日2022-10-12
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A high quality, industrial data set for binding affinity prediction: performance comparison in different early drug discovery scenarios.
J.Comput.Aided Mol.Des., 36, 2022
4KTN
DownloadVisualize
BU of 4ktn by Molmil
Dna gyrase atp binding domain of enterococcus faecalis in complex with a small molecule inhibitor ((3S)-1-[2-(PYRIDO[2,3-B]PYRAZIN-7-YLSULFANYL)-9H-PYRIMIDO[4,5-B]INDOL-4-YL]PYRROLIDIN-3-AMINE)
分子名称: (3S)-1-[2-(pyrido[2,3-b]pyrazin-7-ylsulfanyl)-9H-pyrimido[4,5-b]indol-4-yl]pyrrolidin-3-amine, DNA gyrase subunit B
著者Bensen, D.C, Akers-rodriguez, S, Tari, L.W.
登録日2013-05-20
公開日2014-01-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献A new class of type iia topoisomerase inhibitors with broad-spectrum antibacterial activity
To be Published
2JII
DownloadVisualize
BU of 2jii by Molmil
Structure of vaccinia related kinase 3
分子名称: 1,2-ETHANEDIOL, SERINE/THREONINE-PROTEIN KINASE VRK3 MOLECULE: VACCINIA RELATED KINASE 3
著者Bunkoczi, G, Eswaran, J, Pike, A.C.W, Uppenberg, J, Ugochukwu, E, von Delft, F, Cooper, C, Salah, E, Savitsky, P, Burgess-Brown, N, Keates, T, Fedorov, O, Sobott, F, Arrowsmith, C.H, Edwards, A, Sundstrom, M, Weigelt, J, Knapp, S.
登録日2007-06-28
公開日2007-07-10
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the pseudokinase VRK3 reveals a degraded catalytic site, a highly conserved kinase fold, and a putative regulatory binding site.
Structure, 17, 2009
259L
DownloadVisualize
BU of 259l by Molmil
AN ADAPTABLE METAL-BINDING SITE ENGINEERED INTO T4 LYSOZYME
分子名称: CHLORIDE ION, COBALT (II) ION, PROTEIN (LYSOZYME)
著者Wray, J.W, Baase, W.A, Ostheimer, G.J, Matthews, B.W.
登録日1999-02-10
公開日1999-04-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Use of a non-rigid region in T4 lysozyme to design an adaptable metal-binding site.
Protein Eng., 13, 2000
3V9M
DownloadVisualize
BU of 3v9m by Molmil
Phospholipase ACII4 from Australian King Brown Snake
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Guddat, L.W, Millers, E.K.
登録日2011-12-27
公開日2013-02-13
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.563 Å)
主引用文献Mechanistic studies on the anticoagulant activity of a phospholipase A2 from the venom of the Australian King Brown Snake (Pseudechis australis)
To be Published
2EP8
DownloadVisualize
BU of 2ep8 by Molmil
Solution structure of the BRCT domain from human Pescadillo homolog 1
分子名称: Pescadillo homolog 1
著者Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the BRCT domain from human Pescadillo homolog 1
To be Published
3ARA
DownloadVisualize
BU of 3ara by Molmil
Discovery of Novel Uracil Derivatives as Potent Human dUTPase Inhibitors
分子名称: 1-[3-({(2R)-2-[hydroxy(diphenyl)methyl]pyrrolidin-1-yl}sulfonyl)propyl]pyrimidine-2,4(1H,3H)-dione, Deoxyuridine 5'-triphosphate nucleotidohydrolase, MAGNESIUM ION
著者Chong, K.T, Miyakoshi, H, Miyahara, S, Fukuoka, M.
登録日2010-11-25
公開日2010-12-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Synthesis and discovery of N-carbonylpyrrolidine- or N-sulfonylpyrrolidine-containing uracil derivatives as potent human deoxyuridine triphosphatase inhibitors
J.Med.Chem., 55, 2012

243083

件を2025-10-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon