PDB: 8861 件ウェブページステータス検索Chemie searchBIRD

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8R3L	Influenza A/H7N9 polymerase in pre-initiation state, intermediate conformation (I) with PB2-C(I), ENDO(T), and Pol II pS5 CTD peptide mimic bound in site 1A/2A 分子名称: 3' vRNA end (51-mer vRNA loop), Polymerase acidic protein, Polymerase basic protein 2, ... 著者 Arragain, B, Cusack, S. 登録日 2023-11-09 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome. Nat Commun, 15, 2024
3D9I	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: AMMONIUM ION, GLYCEROL, RNA-binding protein 16, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.907 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9O	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: AMMONIUM ION, CTD-PEPTIDE, RNA-binding protein 16, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9L	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: ACETATE ION, CTD-PEPTIDE, GLYCEROL, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9M	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: AMMONIUM ION, CTD-PEPTIDE, RNA-binding protein 16, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9N	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: CTD-PEPTIDE, RNA-binding protein 16, SULFATE ION 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
3D9J	Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II 分子名称: AMMONIUM ION, GLYCEROL, RNA-binding protein 16, ... 著者 Becker, R, Loll, B, Meinhart, A. 登録日 2008-05-27 公開日 2008-06-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem., 283, 2008
8T1I	Atomic model of the mammalian Mediator complex with MED26 subunit 分子名称: Mediator of RNA polymerase II transcription subunit 1, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 11, ... 著者 Zhao, H, Asturias, F. 登録日 2023-06-02 公開日 2024-06-12 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (4.68 Å) 主引用文献 An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II. Mol.Cell, 84, 2024
8T9D	CryoEM structure of TR-TRAP 分子名称: Mediator of RNA polymerase II transcription subunit 1, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 11, ... 著者 Zhao, H, Asturias, F. 登録日 2023-06-23 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (4.66 Å) 主引用文献 An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II. Mol.Cell, 84, 2024
6XI8	Yeast TFIIK (Kin28/Ccl1/Tfb3) Complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Cyclin CCL1, ... 著者 van Eeuwen, T, Murakami, K, Li, T, Tsai, K.L. 登録日 2020-06-19 公開日 2021-04-28 実験手法 ELECTRON MICROSCOPY (3.64 Å) 主引用文献 Structure of TFIIK for phosphorylation of CTD of RNA polymerase II. Sci Adv, 7, 2021
4JXT	CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD 分子名称: DNA-directed RNA polymerase II subunit RPB1, Regulation of nuclear pre-mRNA domain-containing protein 1A, UNKNOWN ATOM OR ION 著者 Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC) 登録日 2013-03-28 公開日 2013-11-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol., 21, 2014
4PN0	Structure of S. pombe Pct1 RNA triphosphatase 分子名称: mRNA-capping enzyme subunit beta 著者 Lima, C.D, Doamekpor, S.K. 登録日 2014-05-22 公開日 2014-11-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Fission yeast RNA triphosphatase reads an Spt5 CTD code. Rna, 21, 2015
6DT8	Bacteriophage N4 RNA polymerase II elongation complex 1 分子名称: DNA (5'-D(P*AP*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*GP*GP*UP*GP*G)-3'), RNAP1, ... 著者 Molodtsov, V, Murakami, K.S. 登録日 2018-06-15 公開日 2018-07-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
6DTA	Bacteriophage N4 RNA polymerase II elongation complex 2 分子名称: DNA (5'-D(P*CP*CP*CP*AP*CP*CP*AP*AP*AP*AP*A)-3'), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Molodtsov, V, Murakami, K.S. 登録日 2018-06-15 公開日 2018-07-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.694 Å) 主引用文献 Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
4YGY	Crystal Structure of Human Scp1 bound to trans-proline peptidomimetic CTD phospho-Ser5 peptide 分子名称: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION, peptidomimetic CTD phospho-Ser5 peptide 著者 Mayfield, J.E, Zhang, Y. 登録日 2015-02-26 公開日 2015-09-16 最終更新日 2015-10-28 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Chemical Tools To Decipher Regulation of Phosphatases by Proline Isomerization on Eukaryotic RNA Polymerase II. Acs Chem.Biol., 10, 2015
6DT7	Bacteriophage N4 RNA polymerase II and DNA complex 分子名称: DNA (5'-D(P*CP*CP*AP*CP*CP*TP*GP*CP*A)-3'), RNAP1, RNAP2 著者 Molodtsov, V, Murakami, K.S. 登録日 2018-06-15 公開日 2018-07-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II. J. Biol. Chem., 293, 2018
3OMW	Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II 分子名称: CG14216 著者 Zhang, Y, Zhang, M, Zhang, Y. 登録日 2010-08-27 公開日 2011-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.8701 Å) 主引用文献 Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II, in complex with a transition state analogue. Biochem.J., 434, 2011
4YH1	Structure of Human Scp1 bound to cis-proline peptidomimetic CTD phospho-Ser5 peptide 分子名称: A small phosphatase 1, Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION 著者 Mayfield, J.E, Zhang, Y. 登録日 2015-02-26 公開日 2015-09-16 最終更新日 2015-10-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Chemical Tools To Decipher Regulation of Phosphatases by Proline Isomerization on Eukaryotic RNA Polymerase II. Acs Chem.Biol., 10, 2015
3J1O	Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module 分子名称: Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, ... 著者 Asturias, F.J, Imasaki, T. 登録日 2012-03-29 公開日 2013-03-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (16 Å) 主引用文献 Interaction of the mediator head module with RNA polymerase II. Structure, 20, 2012
4GWP	Structure of the Mediator Head Module from S. cerevisiae 分子名称: Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, ... 著者 Robinson, P.J.J, Bushnell, D.A, Trnka, M.J, Burlingame, A.L, Kornberg, R.D. 登録日 2012-09-03 公開日 2012-10-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (4.2 Å) 主引用文献 Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II. Proc.Natl.Acad.Sci.USA, 109, 2012
4IMI	Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine- tune the Phosphatase Activity of Ssu72. 分子名称: CG14216, CTD, PHOSPHATE ION, ... 著者 Luo, Y, Yogesha, S.D, Zhang, Y. 登録日 2013-01-03 公開日 2013-08-07 最終更新日 2013-10-30 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72. Acs Chem.Biol., 8, 2013
4IMJ	Novel Modifications on C-terminal Domain of RNA Polymerase II can Fine-tune the Phosphatase Activity of Ssu72 分子名称: CG14216, CTD, PHOSPHATE ION, ... 著者 Luo, Y, Yogesha, S.D, Zhang, Y. 登録日 2013-01-03 公開日 2013-08-07 最終更新日 2013-10-23 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Novel Modifications on C-terminal Domain of RNA Polymerase II Can Fine-tune the Phosphatase Activity of Ssu72. Acs Chem.Biol., 8, 2013
3FMV	Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253. 分子名称: Serine phosphatase of RNA polymerase II CTD 著者 Kuzin, A.P, Chen, Y, Seetharaman, J, Forouhar, F, Chinag, Y, Fang, Y, Cunningham, K, Ma, L.-C, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) 登録日 2008-12-22 公開日 2009-01-06 最終更新日 2017-11-01 実験手法 X-RAY DIFFRACTION (3.31 Å) 主引用文献 Crystal structure of the serine phosphatase of RNA polymerase II CTD (SSU72 superfamily) from Drosophila melanogaster. Monoclinic crystal form. Northeast Structural Genomics Consortium target FR253. To be Published
2LO6	Structure of Nrd1 CID bound to phosphorylated RNAP II CTD 分子名称: DNA-directed RNA polymerase II subunit RPB1, Protein NRD1 著者 Kubicek, K, Cerna, H, Pasulka, J, Holub, P, Hrossova, D, Loehr, F, Hofr, C, Vanacova, S, Stefl, R. 登録日 2012-01-17 公開日 2012-12-26 実験手法 SOLUTION NMR 主引用文献 Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1. Genes Dev., 26, 2012
5VKO	SPT6 tSH2-RPB1 1468-1500 pT1471, pS1493 分子名称: DNA-directed RNA polymerase II subunit RPB1, ISOPROPYL ALCOHOL, Transcription elongation factor SPT6 著者 Sdano, M.A, Whitby, F.G, Hill, C.P. 登録日 2017-04-21 公開日 2017-09-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription. Elife, 6, 2017

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