PDB: 1515 件ウェブページステータス検索Chemie searchBIRD

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6OQ1	Crystal Structure of Branched K11/K48-Linked Tri-Ubiquitin 分子名称: Ubiquitin 著者 Boughton, A.J, Fushman, D. 登録日 2019-04-25 公開日 2019-10-23 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. Structure, 28, 2020
6OQ2	NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin 分子名称: Ubiquitin 著者 Boughton, A.J, Fushman, D. 登録日 2019-04-25 公開日 2019-10-23 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. Structure, 28, 2020
5M93	Crystal structure of SdeA-modified ubiquitin. 分子名称: Polyubiquitin-B, SULFATE ION, alpha-D-ribofuranose 著者 Kalayil, S, Bhogaraju, S, Dikic, I. 登録日 2016-10-31 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.793 Å) 主引用文献 Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination. Cell, 167, 2016
5MN9	Crystal structure of MINDY-1 tMIU in complex with K48-diUb 分子名称: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a 著者 Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y. 登録日 2016-12-13 公開日 2017-01-25 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains. EMBO Rep., 18, 2017
5TR5	Solution structure of Serine 65 phosphorylated UBL domain from parkin 分子名称: E3 ubiquitin-protein ligase parkin 著者 Aguirre, J.D, Dunkerley, K.M, Mercier, P, Shaw, G.S. 登録日 2016-10-25 公開日 2016-12-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Structure of phosphorylated UBL domain and insights into PINK1-orchestrated parkin activation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NL4	Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NMC	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-05 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NL5	Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLF	Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLJ	Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5N9V	NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila. 分子名称: NAD(P)(+)--arginine ADP-ribosyltransferase 著者 Chiarini, V, Tossavainen, H. 登録日 2017-02-27 公開日 2018-03-21 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus. Biochim Biophys Acta Gen Subj, 1863, 2019
5O44	Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages. 分子名称: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ... 著者 Padala, P, Isupov, M.N, Wiener, R. 登録日 2017-05-26 公開日 2017-11-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages. J. Mol. Biol., 429, 2017
5VSZ	Structure of the Ubl domain of Sacsin mutant L78M 分子名称: Sacsin 著者 Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. 登録日 2017-05-15 公開日 2017-05-31 最終更新日 2018-08-29 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
5NVG	Thr12 Phosphorylated Ubiquitin 分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B 著者 Huguenin-Dezot, N. 登録日 2017-05-04 公開日 2017-05-31 最終更新日 2017-09-13 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing. Nat. Methods, 14, 2017
5W46	Structure of S65D Phosphomimetic Ubiquitin Refined at 1.2 Angstroms Resolution 分子名称: MAGNESIUM ION, Polyubiquitin-B 著者 Kazansky, Y, Singh, R.K, Fushman, D. 登録日 2017-06-09 公開日 2017-07-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Impact of different ionization states of phosphorylated Serine-65 on ubiquitin structure and interactions. Sci Rep, 8, 2018
5VSX	Structure of the Ubl domain of Sacsin 分子名称: Sacsin 著者 Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. 登録日 2017-05-13 公開日 2017-05-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
5NLI	Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5VF0	Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin 分子名称: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION 著者 Hu, Q, Botuyan, M.V, Mer, G. 登録日 2017-04-06 公開日 2017-05-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18. Mol. Cell, 66, 2017
5VIX	Crystal structure of Polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 分子名称: NITRATE ION, Polyubiquitin 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2017-04-17 公開日 2017-05-24 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal structure of polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 TO BE PUBLISHED
5OHL	K6-specific affimer bound to K6 diUb 分子名称: GLYCEROL, K6-specific affimer, POLYETHYLENE GLYCOL (N=34), ... 著者 Michel, M.A, Komander, D. 登録日 2017-07-17 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling. Mol. Cell, 68, 2017
5OHM	K33-specific affimer bound to K33 diUb 分子名称: K33-specific affimer, POLYETHYLENE GLYCOL (N=34), Polyubiquitin-C 著者 Michel, M.A, Komander, D. 登録日 2017-07-17 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling. Mol. Cell, 68, 2017
5UJL	Representative 1-conformer ensembles of K27-linked Ub2 from RDC data 分子名称: Ubiquitin 著者 Castaneda, C.A, Fushman, D. 登録日 2017-01-18 公開日 2017-10-25 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5UJN	Representative 2-conformer ensembles of K27-linked Ub2 from RDC data 分子名称: Ubiquitin 著者 Castaneda, C.A, Fushman, D. 登録日 2017-01-18 公開日 2018-08-08 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
6V5D	EROS3 RDC and NOE Derived Ubiquitin Ensemble 分子名称: Ubiquitin 著者 Lange, O.F, Lakomek, N.A, Smith, C.A, Griesinger, C, de Groot, B.L. 登録日 2019-12-04 公開日 2020-01-01 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Enhancing NMR derived ensembles with kinetics on multiple timescales. J.Biomol.Nmr, 74, 2020
5OXI	C-terminally retracted ubiquitin L67S mutant 分子名称: SULFATE ION, Ubiquitin L67S mutant 著者 Gladkova, C.G, Schubert, A.F, Wagstaff, J.L, Pruneda, J.N, Freund, S.M.V, Komander, D. 登録日 2017-09-06 公開日 2017-11-22 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1. EMBO J., 36, 2017

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