PDB: 1466 件ウェブページステータス検索Chemie searchBIRD

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6A6I	Crystal structure of the winged-helix domain of Cockayne syndrome group B protein in complex with ubiquitin 分子名称: CHLORIDE ION, Excision repair cross-complementing rodent repair deficiency, complementation group 6 variant, ... 著者 Takahashi, T.S, Sato, Y, Fukai, S. 登録日 2018-06-28 公開日 2019-02-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural basis of ubiquitin recognition by the winged-helix domain of Cockayne syndrome group B protein. Nucleic Acids Res., 47, 2019
5VSZ	Structure of the Ubl domain of Sacsin mutant L78M 分子名称: Sacsin 著者 Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. 登録日 2017-05-15 公開日 2017-05-31 最終更新日 2018-08-29 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
3VDZ	Tailoring Encodable Lanthanide-Binding Tags as MRI Contrast Agents: xq-dSE3-Ubiquitin at 2.4 Angstroms 分子名称: GADOLINIUM ATOM, SULFATE ION, Ubiquitin-40S ribosomal protein S27a 著者 Daughtry, K.D, Martin, L.J, Surraju, A, Imperiali, B, Allen, K.N. 登録日 2012-01-06 公開日 2012-11-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Tailoring encodable lanthanide-binding tags as MRI contrast agents. Chembiochem, 13, 2012
3ZLZ	Lys6-linked tri-ubiquitin 分子名称: UBIQUITIN, ZINC ION 著者 Hospenthal, M.K, Freund, S.M.V, Komander, D. 登録日 2013-02-04 公開日 2013-04-10 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Assembly, Analysis and Architecture of Atypical Ubiquitin Chains Nat.Struct.Mol.Biol., 20, 2013
4A20	Crystal structure of the Ubl domain of Mdy2 (Get5) at 1.78A 分子名称: SULFATE ION, UBIQUITIN-LIKE PROTEIN MDY2 著者 Simon, A.C, Simpson, P.J, Murray, J.W, Isaacson, R.L. 登録日 2011-09-21 公開日 2012-11-14 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Structure of the Sgt2/Get5 Complex Provides Insights Into Get-Mediated Targeting of Tail-Anchored Membrane Proteins Proc.Natl.Acad.Sci.USA, 110, 2013
3VFK	The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-2-deoxy-beta-D-glucopyranose, 8-METHYLNONANOIC ACID, ... 著者 Economou, N.J, Weeks, S.D, Grasty, K.C, Loll, P.J. 登録日 2012-01-09 公開日 2013-01-09 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach. Acta Crystallogr.,Sect.D, 69, 2013
7S6O	The crystal structure of Lys48-linked di-ubiquitin 分子名称: ACETATE ION, Ubiquitin 著者 Osipiuk, J, Tesar, C, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A. 登録日 2021-09-14 公開日 2021-09-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun, 14, 2023
7S6P	The crystal structure of human ISG15 分子名称: Ubiquitin-like protein ISG15 著者 Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Wydorski, P, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2021-09-14 公開日 2021-09-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun, 14, 2023
7RMA	Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant) 分子名称: Ankyrin repeat domain-containing protein 13D, SODIUM ION, SULFATE ION, ... 著者 Singer, A.U, Manczyk, N, Veggiani, G, Sicheri, F, Sidhu, S.S. 登録日 2021-07-27 公開日 2022-05-11 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Panel of Engineered Ubiquitin Variants Targeting the Family of Human Ubiquitin Interacting Motifs. Acs Chem.Biol., 17, 2022
5M93	Crystal structure of SdeA-modified ubiquitin. 分子名称: Polyubiquitin-B, SULFATE ION, alpha-D-ribofuranose 著者 Kalayil, S, Bhogaraju, S, Dikic, I. 登録日 2016-10-31 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.793 Å) 主引用文献 Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination. Cell, 167, 2016
5MN9	Crystal structure of MINDY-1 tMIU in complex with K48-diUb 分子名称: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a 著者 Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y. 登録日 2016-12-13 公開日 2017-01-25 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains. EMBO Rep., 18, 2017
5NL4	Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NMC	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-05 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NL5	Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLF	Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb 分子名称: ACETATE ION, Polyubiquitin-C, ZINC ION 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLJ	Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-04-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5O44	Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages. 分子名称: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ... 著者 Padala, P, Isupov, M.N, Wiener, R. 登録日 2017-05-26 公開日 2017-11-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages. J. Mol. Biol., 429, 2017
5NVG	Thr12 Phosphorylated Ubiquitin 分子名称: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B 著者 Huguenin-Dezot, N. 登録日 2017-05-04 公開日 2017-05-31 最終更新日 2017-09-13 実験手法 X-RAY DIFFRACTION (1.07 Å) 主引用文献 Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing. Nat. Methods, 14, 2017
5NLI	Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ... 著者 Fermani, S, Falini, G. 登録日 2017-04-04 公開日 2017-05-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5N9V	NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila. 分子名称: NAD(P)(+)--arginine ADP-ribosyltransferase 著者 Chiarini, V, Tossavainen, H. 登録日 2017-02-27 公開日 2018-03-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus. Biochim Biophys Acta Gen Subj, 1863, 2019
5OHV	K33-specific affimer bound to K33 diUb 分子名称: GLYCEROL, K33-specific affimer, SULFATE ION, ... 著者 Michel, M.A, Komander, D. 登録日 2017-07-18 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling. Mol. Cell, 68, 2017
5OHL	K6-specific affimer bound to K6 diUb 分子名称: GLYCEROL, K6-specific affimer, POLYETHYLENE GLYCOL (N=34), ... 著者 Michel, M.A, Komander, D. 登録日 2017-07-17 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling. Mol. Cell, 68, 2017
5OHM	K33-specific affimer bound to K33 diUb 分子名称: K33-specific affimer, POLYETHYLENE GLYCOL (N=34), Polyubiquitin-C 著者 Michel, M.A, Komander, D. 登録日 2017-07-17 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling. Mol. Cell, 68, 2017
7BU0	Crystal structure of a OTU deubiquitinase in complex with Ub-PA 分子名称: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine 著者 Ouyang, S.Y, Zhen, X.K. 登録日 2020-04-03 公開日 2020-11-18 最終更新日 2023-04-05 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes. Elife, 9, 2020
6JL3	Crystal Structure of the UBL domain of Plasmodium Falciparum Dsk2 分子名称: Ubiquitin domain-containing protein DSK2,putative 著者 Gupta, I, Khan, S. 登録日 2019-03-03 公開日 2020-02-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.303 Å) 主引用文献 The recognition of proteasomal receptors by Plasmodium falciparum DSK2. Mol.Biochem.Parasitol., 236, 2020

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