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PDB: 58 件

3NZP
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Crystal Structure of the Biosynthetic Arginine decarboxylase SpeA from Campylobacter jejuni, Northeast Structural Genomics Consortium Target BR53
分子名称: Arginine decarboxylase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
著者Forouhar, F, Lew, S, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Belote, R.L, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2010-07-16
公開日2010-09-01
最終更新日2012-02-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structures of bacterial biosynthetic arginine decarboxylases.
Acta Crystallogr.,Sect.F, 66, 2010
3NZQ
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Crystal Structure of Biosynthetic arginine decarboxylase ADC (SpeA) from Escherichia coli, Northeast Structural Genomics Consortium Target ER600
分子名称: Biosynthetic arginine decarboxylase, SULFATE ION
著者Forouhar, F, Lew, S, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Belote, R.L, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2010-07-16
公開日2010-09-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structures of bacterial biosynthetic arginine decarboxylases.
Acta Crystallogr.,Sect.F, 66, 2010
3N2O
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X-ray crystal structure of arginine decarboxylase complexed with Arginine from Vibrio vulnificus
分子名称: AGMATINE, Biosynthetic arginine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
著者Deng, X, Lee, J, Michael, A.J, Tomchick, D.R, Goldsmith, E.J, Phillips, M.A.
登録日2010-05-18
公開日2010-06-09
最終更新日2012-02-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Evolution of substrate specificity within a diverse family of beta/alpha-barrel-fold basic amino acid decarboxylases: X-ray structure determination of enzymes with specificity for L-arginine and carboxynorspermidine.
J.Biol.Chem., 285, 2010
1NJJ
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Crystal structure determination of T. brucei ornithine decarboxylase bound to D-ornithine and to G418
分子名称: GENETICIN, N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE, ornithine decarboxylase
著者Jackson, L.K, Goldsmith, E.J, Phillips, M.A.
登録日2002-12-31
公開日2003-08-26
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献X-ray Structure Determination of Trypanosoma brucei Ornithine Decarboxylase Bound to D-Ornithine and to G418: INSIGHTS INTO SUBSTRATE BINDING AND ODC CONFORMATIONAL FLEXIBILITY.
J.Biol.Chem., 278, 2003
3VAB
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Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP
分子名称: 1,2-ETHANEDIOL, Diaminopimelate decarboxylase 1, SULFATE ION
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2011-12-29
公開日2012-01-18
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP
To be Published
2TOD
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ORNITHINE DECARBOXYLASE FROM TRYPANOSOMA BRUCEI K69A MUTANT IN COMPLEX WITH ALPHA-DIFLUOROMETHYLORNITHINE
分子名称: ALPHA-DIFLUOROMETHYLORNITHINE, PROTEIN (ORNITHINE DECARBOXYLASE), PYRIDOXAL-5'-PHOSPHATE
著者Grishin, N.V, Osterman, A.L, Brooks, H.B, Phillips, M.A, Goldsmith, E.J.
登録日1999-05-18
公開日1999-11-17
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray structure of ornithine decarboxylase from Trypanosoma brucei: the native structure and the structure in complex with alpha-difluoromethylornithine.
Biochemistry, 38, 1999
5BWA
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Crystal structure of ODC-PLP-AZ1 ternary complex
分子名称: Ornithine decarboxylase, Ornithine decarboxylase antizyme 1, PYRIDOXAL-5'-PHOSPHATE
著者Wu, D.H.
登録日2015-06-07
公開日2015-12-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis of Ornithine Decarboxylase inactivation and accelerated degradation by polyamine sensor Antizyme1
Sci Rep, 5, 2015
2J66
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Structural characterisation of BtrK decarboxylase from butirosin biosynthesis
分子名称: 1,2-ETHANEDIOL, BTRK, PYRIDOXAL-5'-PHOSPHATE
著者Popovic, B, Li, Y, Chirgadze, D.Y, Blundell, T.L, Spencer, J.B.
登録日2006-09-26
公開日2006-09-28
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural Characterisation of Btrk Decarboxylase from Bacillus Circulans Butirosin Biosynthesis
To be Published
1QU4
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CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI ORNITHINE DECARBOXYLASE
分子名称: ORNITHINE DECARBOXYLASE, PYRIDOXAL-5'-PHOSPHATE
著者Grishin, N.V, Osterman, A.L, Brooks, H.B, Phillips, M.A, Goldsmith, E.J.
登録日1999-07-06
公開日1999-11-17
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献X-ray structure of ornithine decarboxylase from Trypanosoma brucei: the native structure and the structure in complex with alpha-difluoromethylornithine.
Biochemistry, 38, 1999
1D7K
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CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 ANGSTROMS RESOLUTION
分子名称: HUMAN ORNITHINE DECARBOXYLASE
著者Almrud, J.J, Oliveira, M.A, Kern, A.D, Grishin, N.V, Phillips, M.A, Hackert, M.L.
登録日1999-10-18
公開日2000-10-25
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of human ornithine decarboxylase at 2.1 A resolution: structural insights to antizyme binding.
J.Mol.Biol., 295, 2000
4AIB
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Crystal Structure of Ornithine Decarboxylase from Entamoeba histolytica.
分子名称: ORNITHINE DECARBOXYLASE
著者Preeti, P, Kumar, P, Tomar, S.
登録日2012-02-09
公開日2013-01-30
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Structural Insight Into Dfmo Resistant Ornithine Decarboxylase from Entamoeba Histolytica: An Inkling to Adaptive Evolution.
Plos One, 8, 2013
7JPJ
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Crystal Structure of the essential dimeric LYSA from Phaeodactylum tricornutum
分子名称: D-LYSINE, Diaminopimelate decarboxylase, SULFATE ION
著者Fedorov, E, Belinski, V.A, Brunson, J.K, Almo, S.C, Dupont, C.L, Ghosh, A.
登録日2020-08-08
公開日2021-06-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.78 Å)
主引用文献The Phaeodactylum tricornutum diaminopimelate decarboxylase was acquired via horizontal gene transfer from bacteria and displays substrate promiscuity
Biorxiv, 2020
2YXX
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Crystal structure analysis of Diaminopimelate decarboxylate (lysA)
分子名称: Diaminopimelate decarboxylase, PYRIDOXAL-5'-PHOSPHATE
著者Nakamura, Y, Bessho, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-27
公開日2007-10-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure analysis of Diaminopimelate decarboxylate (lysA)
To be Published
7KH2
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Structure of N-citrylornithine decarboxylase bound with PLP
分子名称: GLYCEROL, N-citrylornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE, ...
著者Deng, X, Tomchick, D, Phillips, M, Michael, A.
登録日2020-10-19
公開日2020-12-16
最終更新日2021-07-28
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Alternative pathways utilize or circumvent putrescine for biosynthesis of putrescine-containing rhizoferrin.
J.Biol.Chem., 296, 2020
6N2F
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Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 2)
分子名称: Diaminopimelate decarboxylase 2, chloroplastic, LYSINE, ...
著者Crowther, J.M, Dobson, R.C.J.
登録日2018-11-12
公開日2019-04-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Active site gating provides stereochemical control for meso-diaminopimelate decarboxylase
To Be Published
5X7N
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Crystal structure of meso-diaminopimelate decarboxylase (DAPDC) from Corynebacterium glutamicum
分子名称: Diaminopimelate decarboxylase, GLYCEROL, LYSINE, ...
著者Son, H.-F, Kim, K.-J.
登録日2017-02-27
公開日2018-01-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Structural basis for substrate specificity of meso-diaminopimelic acid decarboxylase from Corynebacterium glutamicum.
Biochem. Biophys. Res. Commun., 495, 2018
6N2H
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Structure of D-ornithine/D-lysine decarboxylase from Salmonella typhimurium
分子名称: 1,4-DIETHYLENE DIOXIDE, D-ornithine/D-lysine decarboxylase, DIMETHYL SULFOXIDE
著者Phillips, R.S, Hoover, T.R.
登録日2018-11-13
公開日2019-10-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Crystal Structure of d-Ornithine/d-Lysine Decarboxylase, a Stereoinverting Decarboxylase: Implications for Substrate Specificity and Stereospecificity of Fold III Decarboxylases.
Biochemistry, 58, 2019
1KNW
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Crystal structure of diaminopimelate decarboxylase
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Diaminopimelate decarboxylase, LITHIUM ION, ...
著者Levdikov, V, Blagova, L, Bose, N, Momany, C.
登録日2001-12-19
公開日2003-11-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation
To be Published
5X7M
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Crystal structure of meso-diaminopimelate decarboxylase (DAPDC) from Corynebacterium glutamicum
分子名称: Diaminopimelate decarboxylase, PYRIDOXAL-5'-PHOSPHATE
著者Son, H.-F, Kim, K.-J.
登録日2017-02-27
公開日2018-01-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for substrate specificity of meso-diaminopimelic acid decarboxylase from Corynebacterium glutamicum.
Biochem. Biophys. Res. Commun., 495, 2018
7U6P
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Structure of an intellectual disability-associated ornithine decarboxylase variant G84R
分子名称: Ornithine decarboxylase, PHOSPHATE ION
著者Zhou, X.E, Schultz, C.R, Powell, K.S, Henrickson, A, Lamp, J, Brunzelle, J.S, Demeler, B, Vega, I.E, Bachmann, A.S, Melcher, K.
登録日2022-03-04
公開日2022-10-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structure and Enzymatic Activity of an Intellectual Disability-Associated Ornithine Decarboxylase Variant, G84R.
Acs Omega, 7, 2022
7U6U
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Structure of an intellectual disability-associated ornithine decarboxylase variant G84R in complex with PLP
分子名称: Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
著者Zhou, X.E, Schultz, C.R, Powell, K.S, Henrickson, A, Lamp, J, Brunzelle, J.S, Demeler, B, Vega, I.E, Bachmann, A.S, Melcher, K.
登録日2022-03-06
公開日2022-10-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure and Enzymatic Activity of an Intellectual Disability-Associated Ornithine Decarboxylase Variant, G84R.
Acs Omega, 7, 2022
1KO0
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Crystal Structure of a D,L-lysine complex of diaminopimelate decarboxylase
分子名称: D-LYSINE, Diaminopimelate decarboxylase, LYSINE, ...
著者Levdikov, V, Blagova, L, Bose, N, Momany, C.
登録日2001-12-19
公開日2003-11-11
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation
To be Published
3BTN
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Crystal structure of antizyme inhibitor, an ornithine decarboxylase homologous protein
分子名称: Antizyme inhibitor 1
著者Dym, O, Unger, T, Albeck, S, Kahana, C, Israel Structural Proteomics Center (ISPC)
登録日2007-12-30
公開日2008-04-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystallographic and biochemical studies revealing the structural basis for antizyme inhibitor function.
Protein Sci., 17, 2008
3C5Q
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Crystal structure of diaminopimelate decarboxylase (I148L mutant) from Helicobacter pylori complexed with L-lysine
分子名称: Diaminopimelate decarboxylase, GLYCEROL, LYSINE, ...
著者Hu, T, Wu, D, Jiang, H, Shen, X.
登録日2008-02-01
公開日2008-05-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of diaminopimelate decarboxylase from Helicobacter pylori
To be Published
7ODC
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CRYSTAL STRUCTURE ORNITHINE DECARBOXYLASE FROM MOUSE, TRUNCATED 37 RESIDUES FROM THE C-TERMINUS, TO 1.6 ANGSTROM RESOLUTION
分子名称: PROTEIN (ORNITHINE DECARBOXYLASE), PYRIDOXAL-5'-PHOSPHATE
著者Kern, A.D, Oliveira, M.A, Coffino, P, Hackert, M.L.
登録日1999-03-03
公開日1999-10-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of mammalian ornithine decarboxylase at 1.6 A resolution: stereochemical implications of PLP-dependent amino acid decarboxylases.
Structure Fold.Des., 7, 1999

 

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