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PDB: 60 件

3W5W
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Mn2+-GMP complex of nanoRNase (Nrn) from Bacteroides fragilis
分子名称: GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Putative exopolyphosphatase-related protein
著者Uemura, Y, Nakagawa, N, Wakamatsu, T, Montelione, G.T, Hunt, J.F, Masui, R, Kuramitsu, S.
登録日2013-02-07
公開日2013-07-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.
Febs Lett., 587, 2013
4PY9
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Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
分子名称: PHOSPHATE ION, Putative exopolyphosphatase-related protein, SODIUM ION
著者Seetharaman, J, Abashidze, M, Wang, H, Janjua, H, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2014-03-26
公開日2014-06-25
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
To be Published
1WPN
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Crystal structure of the N-terminal core of Bacillus subtilis inorganic pyrophosphatase
分子名称: MANGANESE (II) ION, Manganese-dependent inorganic pyrophosphatase, SULFATE ION
著者Fabrichniy, I.P, Lehtio, L, Salminen, A, Baykov, A.A, Lahti, R, Goldman, A.
登録日2004-09-09
公開日2004-11-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural Studies of Metal Ions in Family II Pyrophosphatases: The Requirement for a Janus Ion
Biochemistry, 43, 2004
4RPA
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BU of 4rpa by Molmil
Crystal structure of inorganic pyrophosphatase from Staphylococcus aureus in complex with Mn2+
分子名称: MANGANESE (II) ION, Probable manganese-dependent inorganic pyrophosphatase
著者Gajadeera, C.S, Tsodikov, O.V.
登録日2014-10-30
公開日2015-01-21
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of inorganic pyrophosphatase from Staphylococcus aureus reveals conformational flexibility of the active site.
J.Struct.Biol., 189, 2015
3DEV
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BU of 3dev by Molmil
Crystal structure of SH1221 protein from Staphylococcus haemolyticus, Northeast Structural Genomics Consortium Target ShR87
分子名称: MAGNESIUM ION, SH1221, SULFATE ION
著者Forouhar, F, Neely, H, Seetharaman, J, Mao, L, Xiao, R, Ciccosanti, C, Foote, E.L, Wang, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2008-06-10
公開日2008-08-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structure of SH1221 protein from Staphylococcus haemolyticus, Northeast Structural Genomics Consortium Target ShR87
To be Published
5CET
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BU of 5cet by Molmil
Crystal structure of Rv2837c
分子名称: Bifunctional oligoribonuclease and PAP phosphatase NrnA, MANGANESE (II) ION
著者Wang, F, He, Q, Zhu, D, Liu, S, Gu, L.
登録日2015-07-07
公開日2015-12-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and Biochemical Insight into the Mechanism of Rv2837c from Mycobacterium tuberculosis as a c-di-NMP Phosphodiesterase
J.Biol.Chem., 291, 2016
4LS9
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Structure of mycobacterial nrnA homolog reveals multifunctional nuclease activities
分子名称: DHH family protein, GLYCEROL, MANGANESE (II) ION
著者Kumar, D, Srivastav, R, Grover, A, Manjasetty, B.A, Sharma, R, Taneja, B.
登録日2013-07-22
公開日2014-07-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Unique subunit packing in mycobacterial nanoRNase leads to alternate substrate recognitions in DHH phosphodiesterases
Nucleic Acids Res., 42, 2014
8IOO
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BU of 8ioo by Molmil
Crystal structure of Deinococcus radiodurans RecJ-like protein in complex with Mg2+
分子名称: MAGNESIUM ION, RecJ-like protein, SULFATE ION
著者Cheng, K.
登録日2023-03-13
公開日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structural and functional investigation of the DHH/DHHA1 family proteins in Deinococcus radiodurans
To Be Published
8IU7
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Structure of Staphylococcus aureus NrnA (Pde2) in complex with Mg2+
分子名称: Bifunctional oligoribonuclease and PAP phosphatase NrnA, MAGNESIUM ION
著者Cheng, K, Wang, Y.
登録日2023-03-23
公開日2024-04-24
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Structure of Staphylococcus aureus NrnA in complex with Mg2+.
To Be Published
2HAW
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BU of 2haw by Molmil
Crystal structure of family II Inorganic pyrophosphatase in complex with PNP
分子名称: CHLORIDE ION, FLUORIDE ION, GLYCEROL, ...
著者Fabrichniy, I.P, Lehtio, L, Oksanen, E, Goldman, A.
登録日2006-06-13
公開日2006-11-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献A trimetal site and substrate distortion in a family II inorganic pyrophosphatase
J.Biol.Chem., 282, 2007
2IW4
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BU of 2iw4 by Molmil
CRYSTAL STRUCTURE OF BASILLUS SUBTILIS FAMILY II INORGANIC PYROPHOSPHATASE MUTANT, H98Q, IN COMPLEX WITH PNP
分子名称: FE (III) ION, GLYCEROL, IMIDODIPHOSPHORIC ACID, ...
著者Fabrichniy, I.P, Lehtio, L, Oksanen, E, Goldman, A.
登録日2006-06-26
公開日2006-11-07
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A Trimetal Site and Substrate Distortion in a Family II Inorganic Pyrophosphatase.
J.Biol.Chem., 282, 2007
2EB0
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Crystal structure of Methanococcus jannaschii putative family II inorganic pyrophosphatase
分子名称: MANGANESE (II) ION, Manganese-dependent inorganic pyrophosphatase
著者Shimada, A, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-05
公開日2007-08-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase
To be Published
2ENX
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Structure of the family II inorganic pyrophosphatase from Streptococcus agalactiae at 2.8 resolution
分子名称: IMIDODIPHOSPHORIC ACID, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Rantanen, M.K, Lehtio, L, Rajagopal, L, Rubens, C.E, Goldman, A.
登録日2007-03-28
公開日2007-05-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of the Streptococcus agalactiae family II inorganic pyrophosphatase at 2.80 A resolution
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
1WPP
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BU of 1wpp by Molmil
Structure of Streptococcus gordonii inorganic pyrophosphatase
分子名称: CHLORIDE ION, Probable manganese-dependent inorganic pyrophosphatase, SULFATE ION, ...
著者Fabrichniy, I.P, Lehtio, L, Salminen, A, Baykov, A.A, Lahti, R, Goldman, A.
登録日2004-09-09
公開日2004-11-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural Studies of Metal Ions in Family II Pyrophosphatases: The Requirement for a Janus Ion
Biochemistry, 43, 2004
1WPM
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BU of 1wpm by Molmil
Structure of Bacillus subtilis inorganic pyrophosphatase
分子名称: Manganese-dependent inorganic pyrophosphatase, SULFATE ION, TETRAETHYLENE GLYCOL
著者Fabrichniy, I.P, Lehtio, L, Salminen, A, Baykov, A.A, Lahti, R, Goldman, A.
登録日2004-09-09
公開日2004-11-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural Studies of Metal Ions in Family II Pyrophosphatases: The Requirement for a Janus Ion
Biochemistry, 43, 2004
2QB7
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BU of 2qb7 by Molmil
Saccharomyces cerevisiae cytosolic exopolyphosphatase, phosphate complex
分子名称: 1,2-ETHANEDIOL, ACETATE ION, COBALT (II) ION, ...
著者White, S.A, Ugochukwu, E.
登録日2007-06-16
公開日2007-12-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The crystal structure of the cytosolic exopolyphosphatase from Saccharomyces cerevisiae reveals the basis for substrate specificity.
J.Mol.Biol., 371, 2007
2QB8
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Saccharomyces cerevisiae cytosolic exopolyphosphatase, ATP complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Exopolyphosphatase, MAGNESIUM ION
著者White, S.A, Ugochukwu, E.
登録日2007-06-16
公開日2007-12-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The crystal structure of the cytosolic exopolyphosphatase from Saccharomyces cerevisiae reveals the basis for substrate specificity.
J.Mol.Biol., 371, 2007
2QB6
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Saccharomyces cerevisiae cytosolic exopolyphosphatase, sulfate complex
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Exopolyphosphatase, ...
著者White, S.A, Ugochukwu, E.
登録日2007-06-16
公開日2007-12-11
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The crystal structure of the cytosolic exopolyphosphatase from Saccharomyces cerevisiae reveals the basis for substrate specificity.
J.Mol.Biol., 371, 2007
6LL8
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Type II inorganic pyrophosphatase (PPase) from the psychrophilic bacterium Shewanella sp. AS-11, Mg-PNP form
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, FLUORIDE ION, ...
著者Horitani, M, Kusubayashi, K, Oshima, K, Yato, A, Sugimoto, H, Watanabe, K.
登録日2019-12-21
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献X-ray Crystallography and Electron Paramagnetic Resonance Spectroscopy Reveal Active Site Rearrangement of Cold-Adapted Inorganic Pyrophosphatase.
Sci Rep, 10, 2020
2ZXO
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BU of 2zxo by Molmil
Crystal structure of RecJ from Thermus thermophilus HB8
分子名称: Single-stranded DNA specific exonuclease RecJ
著者Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S.
登録日2009-01-05
公開日2010-01-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of RecJ exonuclease defines its specificity for single-stranded DNA
J.Biol.Chem., 285, 2010
6LL7
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Type II inorganic pyrophosphatase (PPase) from the psychrophilic bacterium Shewanella sp. AS-11, Mn-activated form
分子名称: CALCIUM ION, Inorganic pyrophosphatase, MANGANESE (II) ION
著者Horitani, M, Kusubayashi, K, Oshima, K, Yato, A, Sugimoto, H, Watanabe, K.
登録日2019-12-21
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献X-ray Crystallography and Electron Paramagnetic Resonance Spectroscopy Reveal Active Site Rearrangement of Cold-Adapted Inorganic Pyrophosphatase.
Sci Rep, 10, 2020
6LRD
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BU of 6lrd by Molmil
Structure of RecJ complexed with a 5'-P-dSpacer-modified ssDNA
分子名称: ASP-LEU-PRO-PHE, DNA (5'-D(P*(3DR)P*TP*TP*TP*TP*T)-3'), MANGANESE (II) ION, ...
著者Cheng, K, Hua, Y.
登録日2020-01-16
公開日2020-08-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.901335 Å)
主引用文献Participation of RecJ in the base excision repair pathway of Deinococcus radiodurans.
Nucleic Acids Res., 48, 2020
2ZXP
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Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8
分子名称: MANGANESE (II) ION, Single-stranded DNA specific exonuclease RecJ
著者Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S.
登録日2009-01-05
公開日2010-01-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of RecJ exonuclease defines its specificity for single-stranded DNA
J.Biol.Chem., 285, 2010
2ZXR
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Crystal structure of RecJ in complex with Mg2+ from Thermus thermophilus HB8
分子名称: MAGNESIUM ION, Single-stranded DNA specific exonuclease RecJ
著者Wakamatsu, T, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S.
登録日2009-01-05
公開日2010-01-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure of RecJ exonuclease defines its specificity for single-stranded DNA
J.Biol.Chem., 285, 2010
1I74
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STREPTOCOCCUS MUTANS INORGANIC PYROPHOSPHATASE
分子名称: MAGNESIUM ION, MANGANESE (II) ION, PROBABLE MANGANESE-DEPENDENT INORGANIC PYROPHOSPHATASE, ...
著者Merckel, M.C, Fabrichniy, I.P, Goldman, A, Lahti, R, Salminen, A.
登録日2001-03-07
公開日2001-06-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Streptococcus mutans pyrophosphatase: a new fold for an old mechanism.
Structure, 9, 2001

 

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