Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 265 件
1NJZ
DownloadVisualize
BU of 1njz by Molmil
CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
分子名称: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1NK9
DownloadVisualize
BU of 1nk9 by Molmil
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
分子名称: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1NJW
DownloadVisualize
BU of 1njw by Molmil
GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
分子名称: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1NK5
DownloadVisualize
BU of 1nk5 by Molmil
ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
分子名称: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1NK4
DownloadVisualize
BU of 1nk4 by Molmil
GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
分子名称: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1NK0
DownloadVisualize
BU of 1nk0 by Molmil
ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA POLYMERASE I, DNA PRIMER STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1NKE
DownloadVisualize
BU of 1nke by Molmil
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA POLYMERASE I, DNA PRIMER STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1NK7
DownloadVisualize
BU of 1nk7 by Molmil
GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
分子名称: DNA POLYMERASE I, DNA PRIMER STRAND, DNA TEMPLATE STRAND, ...
著者Johnson, S.J, Beese, L.S.
登録日2003-01-02
公開日2004-03-30
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of mismatch replication errors observed in a DNA polymerase.
Cell(Cambridge,Mass.), 116, 2004
1U45
DownloadVisualize
BU of 1u45 by Molmil
8oxoguanine at the pre-insertion site of the polymerase active site
分子名称: DNA polymerase I, DNA primer strand, DNA template strand with 8-oxoguanine, ...
著者Hsu, G.W, Ober, M, Carell, T, Beese, L.S.
登録日2004-07-23
公開日2004-09-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.
Nature, 431, 2004
1U4B
DownloadVisualize
BU of 1u4b by Molmil
Extension of an adenine-8oxoguanine mismatch
分子名称: DNA polymerase I, DNA primer strand, DNA template strand with 8-oxoguanine, ...
著者Hsu, G.W, Ober, M, Carell, T, Beese, L.S.
登録日2004-07-23
公開日2004-09-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.
Nature, 431, 2004
1UA0
DownloadVisualize
BU of 1ua0 by Molmil
Aminofluorene DNA adduct at the pre-insertion site of a DNA polymerase
分子名称: 2-AMINOFLUORENE, DNA polymerase I, DNA primer strand, ...
著者Hsu, G.W, Kiefer, J.R, Becherel, O.J, Fuchs, R.P.P, Beese, L.S.
登録日2004-08-11
公開日2004-09-28
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase
J.Biol.Chem., 279, 2004
1UA1
DownloadVisualize
BU of 1ua1 by Molmil
Structure of aminofluorene adduct paired opposite cytosine at the polymerase active site.
分子名称: 2-AMINOFLUORENE, DNA polymerase I, DNA primer strand, ...
著者Hsu, G.W, Kiefer, J.R, Becherel, O.J, Fuchs, R.P.P, Beese, L.S.
登録日2004-08-11
公開日2004-09-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymerase
J.Biol.Chem., 279, 2004
1U47
DownloadVisualize
BU of 1u47 by Molmil
cytosine-8-Oxoguanine base pair at the polymerase active site
分子名称: DNA polymerase I, DNA primer strand, DNA template strand with 8-oxoguanine, ...
著者Hsu, G.W, Ober, M, Carell, T, Beese, L.S.
登録日2004-07-23
公開日2004-09-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.
Nature, 431, 2004
1U49
DownloadVisualize
BU of 1u49 by Molmil
Adenine-8oxoguanine mismatch at the polymerase active site
分子名称: DNA polymerase I, DNA primer strand, DNA template strand with 8-oxoguanine, ...
著者Hsu, G.W, Ober, M, Carell, T, Beese, L.S.
登録日2004-07-23
公開日2004-09-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.
Nature, 431, 2004
1U48
DownloadVisualize
BU of 1u48 by Molmil
Extension of a cytosine-8-oxoguanine base pair
分子名称: DNA polymerase I, DNA primer strand, DNA template strand with 8-oxoguanine, ...
著者Hsu, G.W, Ober, M, Carell, T, Beese, L.S.
登録日2004-07-23
公開日2004-09-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.
Nature, 431, 2004
4B9T
DownloadVisualize
BU of 4b9t by Molmil
Structure of the high fidelity DNA polymerase I with an oxidative formamidopyrimidine-dG DNA lesion -dC basepair in the post-insertion site.
分子名称: 5'-D(*AP*CP*CP*TP*GP*AP*CP*TP*CP*TP)-3', 5'-D(*CP*AP*TP*FOXP*AP*GP*AP*GP*TP*CP*AP*GP*GP*TP*TP)-3', DNA POLYMERASE, ...
著者Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
登録日2012-09-06
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4B9S
DownloadVisualize
BU of 4b9s by Molmil
Structure of the high fidelity DNA polymerase I with an oxidative formamidopyrimidine-dG DNA lesion outside of the pre-insertion site.
分子名称: 5'-D(*AP*CP*CP*TP*GP*AP*CP*TP*CP*TP)-3', 5'-D(*CP*AP*TP*FOXP*AP*GP*AP*GP*TP*CP*AP*GP*GP*TP*TP)-3', DNA POLYMERASE, ...
著者Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
登録日2012-09-06
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4BDP
DownloadVisualize
BU of 4bdp by Molmil
CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES
分子名称: DNA (5'-D(*GP*CP*AP*TP*CP*AP*TP*GP*CP*AP*A)-3'), DNA (5'-D(*TP*AP*TP*TP*GP*CP*AP*TP*GP*AP*TP*GP*C)-3'), MAGNESIUM ION, ...
著者Kiefer, J.R, Mao, C, Beese, L.S.
登録日1997-11-17
公開日1999-01-13
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal.
Nature, 391, 1998
4DQR
DownloadVisualize
BU of 4dqr by Molmil
Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mn2+
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), ...
著者Wang, W, Beese, L.S.
登録日2012-02-16
公開日2012-06-06
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.
J.Biol.Chem., 287, 2012
4DSK
DownloadVisualize
BU of 4dsk by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, PPi and Calcium
分子名称: CALCIUM ION, DNA (5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*CP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), ...
著者Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
登録日2012-02-19
公開日2013-03-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4DQI
DownloadVisualize
BU of 4dqi by Molmil
Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and dCTP (paired with dG of template)
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*C*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ...
著者Wang, W, Beese, L.S.
登録日2012-02-15
公開日2012-06-06
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.
J.Biol.Chem., 287, 2012
4DS5
DownloadVisualize
BU of 4ds5 by Molmil
Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and rCTP in presence of Mg2+
分子名称: DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*C)-3'), DNA polymerase, ...
著者Wang, W, Beese, L.S.
登録日2012-02-17
公開日2012-06-06
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.
J.Biol.Chem., 287, 2012
4DSL
DownloadVisualize
BU of 4dsl by Molmil
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium
分子名称: DNA (5'-D(*G*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA polymerase, ...
著者Gan, J.H, Abdur, R, Liu, H.H, Sheng, J, Caton-Willians, J, Soares, A.S, Huang, Z.
登録日2012-02-19
公開日2013-03-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
To be Published
4B9M
DownloadVisualize
BU of 4b9m by Molmil
Structure of the high fidelity DNA polymerase I with an oxidative formamidopyrimidine-dA DNA lesion -thymine basepair in the post- insertion site.
分子名称: 5'-D(*DC*DA*DA*FAX*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3', 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*TP*TP)-3', DNA POLYMERASE I, ...
著者Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
登録日2012-09-05
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013
4B9U
DownloadVisualize
BU of 4b9u by Molmil
Structure of the high fidelity DNA polymerase I with an oxidative formamidopyrimidine-dG DNA lesion -dA basepair in the post-insertion site.
分子名称: 5'-D(*CP*AP*AP*FOXP*CP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3', 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*GP*AP)-3', DNA POLYMERASE, ...
著者Gehrke, T.H, Lischke, U, Arnold, S, Schneider, S, Carell, T.
登録日2012-09-06
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism of Fapy-DNA Lesions.
Nat.Chem.Biol., 9, 2013

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon