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PDB: 588 件
8TF9
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Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-IP7, produced upon myo-IP6 phosphorylation by TvI
分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase 1, ...
著者Zong, G, Wang, H, Shears, S.B.
登録日2023-07-09
公開日2023-11-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus.
Embo J., 43, 2024
8T98
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Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with Scyllo-3-PP-(1,2,4,5)IP4, Mg, and Fluoride ion
分子名称: (1r,2R,3S,4r,5R,6S)-4-hydroxy-2,3,5,6-tetrakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase 1, ...
著者Zong, G, Wang, H, Shears, S.B.
登録日2023-06-23
公開日2023-11-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Biochemical and structural characterization of an inositol pyrophosphate kinase from a giant virus.
Embo J., 43, 2024
8SXS
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Crystal structure of a Nudix hydrolase effector from Magnaporthe oryzae
分子名称: Nudix hydrolase domain-containing protein
著者McCombe, C.L, Ericsson, D.J, Williams, S.J.
登録日2023-05-23
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Plant pathogenic fungi hijack phosphate starvation signaling with conserved enzymatic effectors
Biorxiv, 2023
5WS7
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Crystal structure of human MTH1(G2K/C87A/C104S mutant) in complex with 2-oxo-dATP
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
著者Nakamura, T, Waz, S, Hirata, K, Nakabeppu, Y, Yamagata, Y.
登録日2016-12-05
公開日2017-01-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Structural and Kinetic Studies of the Human Nudix Hydrolase MTH1 Reveal the Mechanism for Its Broad Substrate Specificity
J. Biol. Chem., 292, 2017
5WWD
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Crystal structure of AtNUDX1
分子名称: AMMONIUM ION, GLYCEROL, MAGNESIUM ION, ...
著者Liu, J, Guan, Z, Yan, L, Zou, T, Yin, P.
登録日2016-12-31
公開日2017-11-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.386 Å)
主引用文献Structural Insights into the Substrate Recognition Mechanism of Arabidopsis GPP-Bound NUDX1 for Noncanonical Monoterpene Biosynthesis.
Mol Plant, 11, 2018
5WY6
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Crystal structure of AtNUDX1 (E56A)
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, Nudix hydrolase 1, ...
著者Liu, J, Guan, Z, Yan, L, Zou, T, Yin, P.
登録日2017-01-11
公開日2017-11-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.779 Å)
主引用文献Structural Insights into the Substrate Recognition Mechanism of Arabidopsis GPP-Bound NUDX1 for Noncanonical Monoterpene Biosynthesis.
Mol Plant, 11, 2018
9B22
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Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose and AMP bound)
分子名称: ADENOSINE MONOPHOSPHATE, ADP-ribose pyrophosphatase, MAGNESIUM ION, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-03-14
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose and AMP bound)
To be published
9B21
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Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose bound, Orthorhombic P form)
分子名称: ADP-ribose pyrophosphatase, MAGNESIUM ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-03-14
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (ADP Ribose bound, Orthorhombic P form)
To be published
9B1Z
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Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo)
分子名称: ADP-ribose pyrophosphatase, SODIUM ION
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-03-14
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo)
To be published
9B20
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Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (AMP bound)
分子名称: ADENOSINE MONOPHOSPHATE, ADP-ribose pyrophosphatase, MAGNESIUM ION
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-03-14
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (AMP bound)
To be published
1HZT
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CRYSTAL STRUCTURE OF METAL-FREE ISOPENTENYL DIPHOSPHATE:DIMETHYLALLYL DIPHOSPHATE ISOMERASE
分子名称: ISOPENTENYL DIPHOSPHATE DELTA-ISOMERASE
著者Durbecq, V, Sainz, G, Oudjama, Y, Clantin, B, Bompard-Gilles, C, Tricot, C, Caillet, J, Stalon, V, Droogmans, L, Villeret, V.
登録日2001-01-26
公開日2001-07-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of isopentenyl diphosphate:dimethylallyl diphosphate isomerase.
Embo J., 20, 2001
1I9A
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STRUCTURAL STUDIES OF CHOLESTEROL BIOSYNTHESIS: MEVALONATE 5-DIPHOSPHATE DECARBOXYLASE AND ISOPENTENYL DIPHOSPHATE ISOMERASE
分子名称: ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE, MANGANESE (II) ION
著者Bonanno, J.B, Edo, C, Eswar, N, Pieper, U, Romanowski, M.J, Ilyin, V, Gerchman, S.E, Kycia, H, Studier, F.W, Sali, A, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2001-03-18
公開日2001-03-28
最終更新日2021-02-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis.
Proc.Natl.Acad.Sci.USA, 98, 2001
2JVB
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Solution Structure of Catalytic Domain of yDcp2
分子名称: mRNA-decapping enzyme subunit 2
著者Deshmukh, M, Gross, J.
登録日2007-09-16
公開日2008-03-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献mRNA Decapping Is Promoted by an RNA-Binding Channel in Dcp2.
Mol.Cell, 29, 2008
2DSB
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Crystal structure of human ADP-ribose pyrophosphatase NUDT5
分子名称: ADP-sugar pyrophosphatase
著者Zha, M, Zhong, C, Ding, J.
登録日2006-06-28
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity
J.Mol.Biol., 364, 2006
2DHO
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Crystal structure of human IPP isomerase I in space group P212121
分子名称: CHLORIDE ION, Isopentenyl-diphosphate delta-isomerase 1, MANGANESE (II) ION, ...
著者Zhang, C, Wei, Z, Gong, W.
登録日2006-03-24
公開日2007-06-05
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of human IPP isomerase: new insights into the catalytic mechanism
J.Mol.Biol., 366, 2007
2DUK
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Crystal structure of MS0616
分子名称: MS0616
著者Hosaka, T, Nishino, A, Uchikubo, K.-T, Kishishita, S, Murayama, K, Shirouzu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-24
公開日2007-01-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Crystal structure of MS0616
To be Published
1K26
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Structure of a Nudix Protein from Pyrobaculum aerophilum Solved by the Single Wavelength Anomolous Scattering Method
分子名称: ACETIC ACID, GLYCEROL, IRIDIUM (III) ION, ...
著者Wang, S, Mura, C, Sawaya, M.R, Cascio, D, Eisenberg, D.
登録日2001-09-26
公開日2002-04-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets.
Acta Crystallogr.,Sect.D, 58, 2002
2I8T
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GDP-mannose mannosyl hydrolase-calcium-GDP-mannose complex
分子名称: CALCIUM ION, GDP-mannose mannosyl hydrolase, GLYCEROL, ...
著者Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K.
登録日2006-09-03
公開日2007-06-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme
Biochemistry, 46, 2007
1KTG
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Crystal Structure of a C. elegans Ap4A Hydrolase Binary Complex
分子名称: ADENOSINE MONOPHOSPHATE, Diadenosine Tetraphosphate Hydrolase, HYDROXIDE ION, ...
著者Bailey, S, Sedelnikova, S.E, Blackburn, G.M, Abdelghany, H.M, Baker, P.J, McLennan, A.G, Rafferty, J.B.
登録日2002-01-16
公開日2002-05-08
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The crystal structure of diadenosine tetraphosphate hydrolase from Caenorhabditis elegans in free and binary complex forms
Structure, 10, 2002
2ICK
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Human isopentenyl diphophate isomerase complexed with substrate analog
分子名称: DIMETHYLALLYL DIPHOSPHATE, Isopentenyl-diphosphate delta isomerase, MANGANESE (II) ION
著者Zheng, W, Bartlam, M, Rao, Z.
登録日2006-09-12
公開日2007-03-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis
J.Mol.Biol., 366, 2007
2KDV
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Solution structure of RNA Pyrophosphohydrolase RppH from Escherichia coli
分子名称: RNA pyrophosphohydrolase
著者Bi, Y, Li, H, Jin, C.
登録日2009-01-19
公開日2010-01-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of RNA pyrophosphohydrolase RppH from Escherichia coli
To be Published
2ICJ
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The crystal structure of human isopentenyl diphophate isomerase
分子名称: Isopentenyl-diphosphate delta isomerase, MAGNESIUM ION, SULFATE ION
著者Zheng, W, Bartlam, M, Rao, Z.
登録日2006-09-12
公開日2007-03-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis
J.Mol.Biol., 366, 2007
1KT9
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Crystal Structure of C. elegans Ap4A Hydrolase
分子名称: Diadenosine Tetraphosphate Hydrolase
著者Bailey, S, Sedelnikova, S.E, Blackburn, G.M, Abdelghany, H.M, Baker, P.J, McLennan, A.G, Rafferty, J.B.
登録日2002-01-15
公開日2002-05-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献The crystal structure of diadenosine tetraphosphate hydrolase from Caenorhabditis elegans in free and binary complex forms
Structure, 10, 2002
1KHZ
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Structure of the ADPR-ase in complex with AMPCPR and Mg
分子名称: ADP-ribose pyrophosphatase, ALPHA-BETA METHYLENE ADP-RIBOSE, CHLORIDE ION, ...
著者Gabelli, S.B, Bianchet, M.A, Bessman, M.J, Amzel, L.M.
登録日2001-12-01
公開日2002-10-09
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Mechanism of the Escherichia coli ADP-ribose pyrophosphatase, a Nudix hydrolase.
Biochemistry, 41, 2002
2B2K
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structure of Y104F IDI-1 mutant in complex with EIPP
分子名称: 4-HYDROXY-3-METHYL BUTYL DIPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, MAGNESIUM ION, ...
著者Wouters, J.
登録日2005-09-19
公開日2006-09-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structural role for Tyr-104 in Escherichia coli isopentenyl-diphosphate isomerase: site-directed mutagenesis, enzymology, and protein crystallography
J.Biol.Chem., 281, 2006

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件を2024-07-10に公開中

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