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PDB: 543 件

2G5Z
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Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis and decarboxylation
分子名称: Green fluorescent protein, MAGNESIUM ION
著者Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2006-02-23
公開日2006-04-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Understanding GFP Posttranslational Chemistry: Structures of Designed Variants that Achieve Backbone Fragmentation, Hydrolysis, and Decarboxylation.
J.Am.Chem.Soc., 128, 2006
2O29
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Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-BR Complex
分子名称: BROMIDE ION, Green fluorescent protein
著者Garau, G.
登録日2006-11-29
公開日2007-05-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP.
Biophys.J., 93, 2007
1JBY
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BU of 1jby by Molmil
CRYSTAL STRUCTURE ANALYSIS OF A DUAL-WAVELENGTH EMISSION GREEN FLUORESCENT PROTEIN VARIANT AT LOW PH
分子名称: GREEN FLUORESCENT PROTEIN
著者Hanson, G.T, McAnaney, T.B, Park, E.S, Rendell, M.E.P, Yarbrough, D.K, Chu, S, Xi, L, Boxer, S.G, Montrose, M.H, Remington, S.J.
登録日2001-06-07
公開日2003-01-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Green Fluorescent Protein Variants as Ratiometric Dual Emission pH Sensors. 1. Structural Characterization and Preliminary Application.
Biochemistry, 41, 2002
8DTA
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BU of 8dta by Molmil
Metal sensitive GFP (mseGFP) complexed with phenylarsine oxide.
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Green fluorescent protein, ...
著者Rosenbaum, J.C, Carlson, A.E.
登録日2022-07-25
公開日2023-07-05
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Glutathione modulates metal binding to proteins.
TBD
8A83
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BU of 8a83 by Molmil
rsEGFP2 with a chlorinated chromophore in the fluorescent ON-state in a crystal dehydrated after illumination
分子名称: Green fluorescent protein, SULFATE ION
著者Fadini, A, van Thor, J, Chang, J.
登録日2022-06-21
公開日2023-07-19
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism.
J.Am.Chem.Soc., 145, 2023
6QQ9
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BU of 6qq9 by Molmil
Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 5.8 MGy
分子名称: CARBON DIOXIDE, Green fluorescent protein
著者Gotthard, G, Aumonier, S, Royant, A.
登録日2019-02-18
公開日2019-06-19
最終更新日2019-07-31
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Specific radiation damage is a lesser concern at room temperature.
Iucrj, 6, 2019
2H9W
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BU of 2h9w by Molmil
Green fluorescent protein ground states: the influence of a second protonation site near the chromophore
分子名称: Green fluorescent protein, SULFATE ION
著者Garau, G.
登録日2006-06-12
公開日2007-04-24
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Green Fluorescent Protein Ground States: The Influence of a Second Protonation Site near the Chromophore.
Biochemistry, 46, 2007
4ZF4
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BU of 4zf4 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(Cl1Y), H148D; circular permutant (50-51)
分子名称: Green fluorescent protein
著者Oltrogge, L.M, Boxer, S.G.
登録日2015-04-21
公開日2015-06-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.823 Å)
主引用文献Short Hydrogen Bonds and Proton Delocalization in Green Fluorescent Protein (GFP).
Acs Cent.Sci., 1, 2015
8SFV
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High affinity nanobodies to GFP
分子名称: GLYCEROL, Green fluorescent protein, LaG19, ...
著者Ketaren, N.E, Rout, M.P, Bonanno, J.B, Almo, S.C.
登録日2023-04-11
公開日2024-05-22
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献High affinity nanobodies to GFP
To Be Published
6T3A
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BU of 6t3a by Molmil
Difference-refined structure of rsEGFP2 10 ns following 400-nm laser irradiation of the off-state determined by SFX
分子名称: Green fluorescent protein
著者Woodhouse, J, Coquelle, N, Adam, V, Barends, T.R.M, De La Mora, E, Bourgeois, D, Colletier, J.P, Schlichting, I, Weik, M.
登録日2019-10-10
公開日2020-02-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.
Nat Commun, 11, 2020
5MA5
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BU of 5ma5 by Molmil
GFP-binding DARPin fusion gc_K11
分子名称: 1,2-ETHANEDIOL, CITRIC ACID, Green fluorescent protein, ...
著者Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A.
登録日2016-11-03
公開日2017-11-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
2AWL
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BU of 2awl by Molmil
Mature R96K GFP mutant
分子名称: MAGNESIUM ION, green fluorescent protein
著者Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
登録日2005-09-01
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005
1W7S
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Wild-Type Aequorea victoria Green Fluorescent Protein
分子名称: GREEN FLUORESCENT PROTEIN
著者Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
登録日2004-09-09
公開日2005-07-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
3UFZ
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Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
分子名称: Green fluorescent protein
著者Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
登録日2011-11-02
公開日2012-10-17
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
1W7U
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BU of 1w7u by Molmil
Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein after structural annealing at 170K
分子名称: GREEN FLUORESCENT PROTEIN
著者Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
登録日2004-09-09
公開日2005-07-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
7VCM
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BU of 7vcm by Molmil
crystal structure of GINKO1
分子名称: Green fluorescent protein,Potassium binding protein Kbp,Green fluorescent protein, POTASSIUM ION
著者Wen, Y, Campbell, R.E, Lemieux, M.J.
登録日2021-09-03
公開日2022-07-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A sensitive and specific genetically-encoded potassium ion biosensor for in vivo applications across the tree of life.
Plos Biol., 20, 2022
3EK7
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BU of 3ek7 by Molmil
Calcium-saturated GCaMP2 dimer
分子名称: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ...
著者Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R.
登録日2008-09-18
公開日2008-12-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design
J.Biol.Chem., 284, 2009
1W7T
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BU of 1w7t by Molmil
Photoproduct of the Wild-Type Aequorea victoria Green Fluorescent Protein at 100 K
分子名称: GREEN FLUORESCENT PROTEIN
著者Van Thor, J.J, Georgiev, G.Y, Towrie, M, Sage, J.T.
登録日2004-09-09
公開日2005-07-20
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Ultrafast and Low Barrier Motions in the Photoreactions of the Green Fluorescent Protein
J.Biol.Chem., 280, 2005
5DPG
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BU of 5dpg by Molmil
sfGFP mutant - 133 p-cyano-L-phenylalanine
分子名称: 1,2-ETHANEDIOL, Green fluorescent protein, SODIUM ION
著者Dippel, A.B, Olenginski, G.M, Maurici, N, Liskov, M.T, Brewer, S.H, Phillips-Piro, C.M.
登録日2015-09-12
公開日2016-01-13
最終更新日2019-11-27
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Probing the effectiveness of spectroscopic reporter unnatural amino acids: a structural study.
Acta Crystallogr D Struct Biol, 72, 2016
3SSV
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BU of 3ssv by Molmil
Engineered low-affinity halide-binding protein derived from YFP: fluoride complex
分子名称: FLUORIDE ION, Green fluorescent protein
著者Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
登録日2011-07-08
公開日2012-07-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.861 Å)
主引用文献Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
5HGE
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BU of 5hge by Molmil
Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Green fluorescent protein
著者Sawaya, M.R, Heller, D.M, McPartland, L, Hochschild, A, Eisenberg, D.S.
登録日2016-01-08
公開日2017-01-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.863 Å)
主引用文献Green Fluorescent Protein Fusion that Self Assembles as Polar Filaments
to be published
5Z6Y
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BU of 5z6y by Molmil
Structure of sfYFP48S95C66BPA
分子名称: Green fluorescent protein
著者Wang, J.Y, Wang, J.Y.
登録日2018-01-25
公開日2019-06-12
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献structure of sfYFP48S95C66BPA at 1.95 Angstroms resolution
To Be Published
8C1X
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BU of 8c1x by Molmil
sfGFP C148 F206 mutant
分子名称: Green fluorescent protein
著者Ahmed, R.D, Rizkallah, P.J, Jones, D.D.
登録日2022-12-21
公開日2024-01-10
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献sfGFP C148 F206 mutant
To Be Published
5FGU
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BU of 5fgu by Molmil
Structure of Sda1 nuclease apoprotein as an EGFP fixed-arm fusion
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Green fluorescent protein,Extracellular streptodornase D, ...
著者Moon, A.F, Krahn, J.M, Xun, L, Cuneo, M.J, Pedersen, L.C.
登録日2015-12-21
公開日2016-03-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.896 Å)
主引用文献Structural characterization of the virulence factor Sda1 nuclease from Streptococcus pyogenes.
Nucleic Acids Res., 44, 2016
8SFZ
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BU of 8sfz by Molmil
High Affinity nanobodies against GFP
分子名称: Green fluorescent protein, LaG35, POTASSIUM ION, ...
著者Ketaren, N.E, Rout, M.P, Bonanno, J.B, Almo, S.C.
登録日2023-04-11
公開日2024-05-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献High Affinity nanobodies against GFP
To Be Published

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