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PDB: 461 件

6UPK
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Structure of FACT_subnucleosome complex 1
分子名称: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ...
著者Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K.
登録日2019-10-17
公開日2019-12-11
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4.9 Å)
主引用文献FACT caught in the act of manipulating the nucleosome.
Nature, 577, 2020
8OSL
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BU of 8osl by Molmil
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)
分子名称: Basic helix-loop-helix ARNT-like protein 1, Circadian locomoter output cycles protein kaput, DNA (147-MER), ...
著者Michael, A.K, Stoos, L, Kempf, G, Cavadini, S, Thoma, N.
登録日2023-04-19
公開日2023-05-24
最終更新日2023-07-26
実験手法ELECTRON MICROSCOPY (4.9 Å)
主引用文献Cooperation between bHLH transcription factors and histones for DNA access.
Nature, 619, 2023
7Y61
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Cryo-EM structure of the two CAF1LCs bound right-handed Di-tetrasome
分子名称: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ...
著者Liu, C.P, Yu, Z.Y, Yu, C, Xu, R.M.
登録日2022-06-18
公開日2023-08-16
最終更新日2023-09-06
実験手法ELECTRON MICROSCOPY (5.6 Å)
主引用文献Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1.
Science, 381, 2023
7Y5V
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Cryo-EM structure of the dimeric human CAF1LC-H3-H4 complex
分子名称: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ...
著者Liu, C.P, Yu, C, Yu, Z.Y, Xu, R.M.
登録日2022-06-17
公開日2023-08-16
最終更新日2023-09-06
実験手法ELECTRON MICROSCOPY (6.1 Å)
主引用文献Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1.
Science, 381, 2023
8OSJ
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Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL-6.2 (DNA conformation 1)
分子名称: Basic helix-loop-helix ARNT-like protein 1, Circadian locomoter output cycles protein kaput, DNA (124-MER), ...
著者Michael, A.K, Stoos, L, Kempf, G, Cavadini, S, Thoma, N.H.
登録日2023-04-19
公開日2023-05-24
最終更新日2023-07-26
実験手法ELECTRON MICROSCOPY (6.2 Å)
主引用文献Cooperation between bHLH transcription factors and histones for DNA access.
Nature, 619, 2023
8J6T
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Cryo-EM structure of the double CAF-1 bound right-handed Di-tetrasome
分子名称: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ...
著者Liu, C.P, Yu, Z.Y, Xu, R.M.
登録日2023-04-26
公開日2023-08-16
最終更新日2023-09-06
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1.
Science, 381, 2023
8JNF
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The cryo-EM structure of the RAD51 filament bound to the nucleosome
分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
著者Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
登録日2023-06-06
公開日2024-03-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (6.91 Å)
主引用文献Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8HE5
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RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
分子名称: DNA (198-MER), DNA repair protein, DNA-directed RNA polymerase subunit, ...
著者Osumi, K, Kujirai, T, Ehara, H, Kinoshita, C, Saotome, M, Kagawa, W, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2022-11-07
公開日2023-07-05
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (6.95 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
6UPL
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Structure of FACT_subnucleosome complex 2
分子名称: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ...
著者Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K.
登録日2019-10-17
公開日2019-12-11
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (7.4 Å)
主引用文献FACT caught in the act of manipulating the nucleosome.
Nature, 577, 2020
8IHL
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Overlapping tri-nucleosome
分子名称: DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H.
登録日2023-02-23
公開日2024-01-17
最終更新日2024-01-24
実験手法ELECTRON MICROSCOPY (7.64 Å)
主引用文献Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties.
Commun Biol, 7, 2024
7V9J
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Telomeric trinucleosome
分子名称: DNA (408-mer), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
著者Soman, A.
登録日2021-08-25
公開日2022-07-27
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (8 Å)
主引用文献Columnar structure of human telomeric chromatin.
Nature, 609, 2022
7V9K
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Telomeric tetranucleosome
分子名称: DNA (539-mer), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
著者Soman, A.
登録日2021-08-25
公開日2022-07-27
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (8.1 Å)
主引用文献Columnar structure of human telomeric chromatin.
Nature, 609, 2022
6HKT
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Structure of an H1-bound 6-nucleosome array
分子名称: DNA (1122-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Garcia-Saez, I, Dimitrov, S, Petosa, C.
登録日2018-09-08
公開日2018-10-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (9.7 Å)
主引用文献Structure of an H1-Bound 6-Nucleosome Array Reveals an Untwisted Two-Start Chromatin Fiber Conformation.
Mol. Cell, 72, 2018
6USJ
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Structure of two nucleosomes bridged by human PARP2
分子名称: Histone H2A, Histone H2B type 1-J, Histone H3.1, ...
著者Gaullier, G, Bowerman, S, Luger, K.
登録日2019-10-27
公開日2020-10-14
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (10.5 Å)
主引用文献Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1.
Plos One, 15, 2020
7V9S
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Telomeric trinucleosome in open state
分子名称: DNA (408-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
著者Soman, A.
登録日2021-08-26
公開日2022-07-27
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (11 Å)
主引用文献Columnar structure of human telomeric chromatin.
Nature, 609, 2022
6L4A
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BU of 6l4a by Molmil
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA
分子名称: DNA (485-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Takizawa, Y, Ho, C.-H, Tachiwana, H, Matsunami, H, Ohi, M, Wolf, M, Kurumizaka, H.
登録日2019-10-16
公開日2019-12-04
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (12.3 Å)
主引用文献Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome.
Structure, 28, 2020
7VA4
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Telomeric tetranucleosome in open state
分子名称: DNA (539-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
著者Soman, A.
登録日2021-08-27
公開日2022-07-27
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (14 Å)
主引用文献Columnar structure of human telomeric chromatin.
Nature, 609, 2022
6L49
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H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA
分子名称: DNA (485-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Takizawa, Y, Ho, C.-H, Tachiwana, H, Matsunami, H, Ohi, M, Wolf, M, Kurumizaka, H.
登録日2019-10-16
公開日2019-12-04
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (18.9 Å)
主引用文献Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome.
Structure, 28, 2020
6V92
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RSC-NCP
分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC14, ...
著者Patel, A.B, Moore, C.M, Greber, B.J, Nogales, E.
登録日2019-12-13
公開日2020-01-15
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (20 Å)
主引用文献Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement.
Elife, 8, 2019
2L75
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Solution structure of CHD4-PHD2 in complex with H3K9me3
分子名称: 14-meric peptide from 1Histone H3.1, Chromodomain-helicase-DNA-binding protein 4, ZINC ION
著者Mansfield, R.E, Kwan, A.H, Mackay, J.P.
登録日2010-12-02
公開日2011-01-19
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Plant Homeodomain (PHD) Fingers of CHD4 Are Histone H3-binding Modules with Preference for Unmodified H3K4 and Methylated H3K9
J.Biol.Chem., 286, 2011
6QXZ
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Solution structure of the ASHH2 CW domain with the N-terminal histone H3 tail mimicking peptide monomethylated on lysine 4
分子名称: ALA-ARG-THR-MLZ-GLN-THR-ALA-ARG-TYR, Histone-lysine N-methyltransferase ASHH2, ZINC ION
著者Dobrovolska, O, Madeleine, N, Teigen, K, Halskau, O, Bril'kov, M.
登録日2019-03-08
公開日2019-12-04
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献The Arabidopsis (ASHH2) CW domain binds monomethylated K4 of the histone H3 tail through conformational selection.
Febs J., 287, 2020
6E86
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Solution structure of ZZZ3 ZZ domain in complex with histone H3K4ac peptide
分子名称: H3K4ac, ZINC ION, ZZ-type zinc finger-containing protein 3
著者Zhang, Y, Kutateladze, T.G.
登録日2018-07-27
公開日2018-09-19
最終更新日2023-11-15
実験手法SOLUTION NMR
主引用文献The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation.
Nat Commun, 9, 2018
2RR4
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Complex structure of the zf-CW domain and the H3K4me3 peptide
分子名称: Histone H3, ZINC ION, Zinc finger CW-type PWWP domain protein 1
著者He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-03-24
公開日2010-09-15
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Structural insight into the zinc finger CW domain as a histone modification reader
Structure, 18, 2010
2M0O
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The solution structure of human PHF1 in complex with H3K36me3
分子名称: H3K36me3 peptide, PHD finger protein 1
著者Song, J, Patel, D.J.
登録日2012-10-30
公開日2013-01-16
最終更新日2013-02-27
実験手法SOLUTION NMR
主引用文献An H3K36 Methylation-Engaging Tudor Motif of Polycomb-like Proteins Mediates PRC2 Complex Targeting.
Mol.Cell, 49, 2013
6E83
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Solution structure of ZZZ3 ZZ domain in complex with histone H3 tail
分子名称: Histone H3, ZINC ION, ZZ-type zinc finger-containing protein 3
著者Zhang, Y, Kutateladze, T.G.
登録日2018-07-27
公開日2018-09-19
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation.
Nat Commun, 9, 2018

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件を2024-07-10に公開中

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