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PDB: 30 件

7O4J
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Yeast RNA polymerase II transcription pre-initiation complex (consensus)
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
登録日2021-04-06
公開日2021-06-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7ML0
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RNA polymerase II pre-initiation complex (PIC1)
分子名称: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
8CEN
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BU of 8cen by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Schilbach, S, Cramer, P.
登録日2023-02-02
公開日2023-03-22
最終更新日2023-04-19
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
7ZS9
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BU of 7zs9 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Cramer, P.
登録日2022-05-06
公開日2022-11-16
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
7ML4
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BU of 7ml4 by Molmil
RNA polymerase II initially transcribing complex (ITC)
分子名称: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-03-09
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7O4I
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BU of 7o4i by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
登録日2021-04-06
公開日2021-06-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O75
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BU of 7o75 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
登録日2021-04-13
公開日2021-06-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7UIO
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BU of 7uio by Molmil
Mediator-PIC Early (Composite Model)
分子名称: ALANINE, ASPARTIC ACID, DNA (37-MER), ...
著者Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K.
登録日2022-03-29
公開日2023-03-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis of a transcription pre-initiation complex on a divergent promoter.
Mol.Cell, 83, 2023
7UI9
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BU of 7ui9 by Molmil
Core Mediator-PICearly (Copy A)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K.
登録日2022-03-28
公開日2023-02-15
最終更新日2023-03-08
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis of a transcription pre-initiation complex on a divergent promoter.
Mol.Cell, 83, 2023
7O73
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BU of 7o73 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
登録日2021-04-12
公開日2021-06-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7O72
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BU of 7o72 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P.
登録日2021-04-12
公開日2021-06-16
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening.
Cell, 184, 2021
7ML2
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BU of 7ml2 by Molmil
RNA polymerase II pre-initiation complex (PIC3)
分子名称: BJ4_G0004860.mRNA.1.CDS.1, BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7MK9
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BU of 7mk9 by Molmil
Complex structure of trailing EC of EC+EC (trailing EC-focused)
分子名称: DNA (40-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Murakami, K.
登録日2021-04-22
公開日2022-04-27
最終更新日2023-05-17
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
7MEI
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BU of 7mei by Molmil
Composite structure of EC+EC
分子名称: DNA (74-MER), DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Murakami, K.
登録日2021-04-06
公開日2022-03-02
実験手法ELECTRON MICROSCOPY (3.54 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
8CEO
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BU of 8ceo by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Cramer, P.
登録日2023-02-02
公開日2023-03-08
最終更新日2023-04-19
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain.
Proc.Natl.Acad.Sci.USA, 120, 2023
7ZSA
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BU of 7zsa by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Cramer, P.
登録日2022-05-06
公開日2022-11-16
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
7ML1
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BU of 7ml1 by Molmil
RNA polymerase II pre-initiation complex (PIC2)
分子名称: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ...
著者Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K.
登録日2021-04-27
公開日2022-02-02
最終更新日2022-02-16
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II.
Mol.Cell, 82, 2022
5FYW
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BU of 5fyw by Molmil
Transcription initiation complex structures elucidate DNA opening (OC)
分子名称: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ...
著者Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P.
登録日2016-03-10
公開日2016-05-18
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.35 Å)
主引用文献Transcription Initiation Complex Structures Elucidate DNA Opening
Nature, 533, 2016
7UIF
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BU of 7uif by Molmil
Mediator-PIC Early (Core B)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K.
登録日2022-03-29
公開日2023-02-15
最終更新日2023-03-08
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Structural basis of a transcription pre-initiation complex on a divergent promoter.
Mol.Cell, 83, 2023
5OQJ
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BU of 5oqj by Molmil
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH
分子名称: DNA repair helicase RAD25, DNA repair helicase RAD3, DNA-directed RNA polymerase II subunit RPB1, ...
著者Schilbach, S, Hantsche, M, Tegunov, D, Dienemann, C, Wigge, C, Henning, U, Cramer, P.
登録日2017-08-11
公開日2018-04-25
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Structures of transcription pre-initiation complex with TFIIH and Mediator.
Nature, 551, 2017
6GYL
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BU of 6gyl by Molmil
Structure of a yeast closed complex with distorted DNA (core CCdist)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P.
登録日2018-06-30
公開日2018-12-05
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Promoter Distortion and Opening in the RNA Polymerase II Cleft.
Mol. Cell, 73, 2019
6GYK
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BU of 6gyk by Molmil
Structure of a yeast closed complex (core CC1)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P.
登録日2018-06-30
公開日2018-12-05
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (5.1 Å)
主引用文献Promoter Distortion and Opening in the RNA Polymerase II Cleft.
Mol. Cell, 73, 2019
5OQM
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BU of 5oqm by Molmil
STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH AND CORE MEDIATOR
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Schilbach, S, Hantsche, M, Tegunov, D, Dienemann, C, Wigge, C, Urlaub, H, Cramer, P.
登録日2017-08-13
公開日2018-05-09
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (5.8 Å)
主引用文献Structures of transcription pre-initiation complex with TFIIH and Mediator.
Nature, 551, 2017
5FMF
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BU of 5fmf by Molmil
the P-lobe of RNA polymerase II pre-initiation complex
分子名称: DNA REPAIR HELICASE RAD25, SSL2, DNA REPAIR HELICASE RAD3, ...
著者Murakami, K, Tsai, K, Kalisman, N, Bushnell, D.A, Asturias, F.J, Kornberg, R.D.
登録日2015-11-03
公開日2015-11-25
最終更新日2017-07-12
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Structure of an RNA Polymerase II Pre-Initiation Complex
Proc.Natl.Acad.Sci.USA, 112, 2015
7ZSB
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BU of 7zsb by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP, complex C
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Cramer, P.
登録日2022-05-06
公開日2022-11-16
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023

 

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