PDB: 1544 resultsInfo pagesStatus searchChemie searchBIRD

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5UJN	Representative 2-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2018-08-08 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
3ZLZ	Lys6-linked tri-ubiquitin Descriptor: UBIQUITIN, ZINC ION Authors: Hospenthal, M.K, Freund, S.M.V, Komander, D. Deposit date: 2013-02-04 Release date: 2013-04-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Assembly, Analysis and Architecture of Atypical Ubiquitin Chains Nat.Struct.Mol.Biol., 20, 2013
5TOG	Room temperature structure of ubiquitin variant u7ub25.2540 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
5VIX	Crystal structure of Polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 Descriptor: NITRATE ION, Polyubiquitin Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-04-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 TO BE PUBLISHED
5TOF	Room temperature structure of ubiquitin variant u7ub25 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.12 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
1UBI	SYNTHETIC STRUCTURAL AND BIOLOGICAL STUDIES OF THE UBIQUITIN SYSTEM. PART 1 Descriptor: UBIQUITIN Authors: Alexeev, D, Bury, S.M, Turner, M.A, Ogunjobi, O.M, Muir, T.W, Ramage, R, Sawyer, L. Deposit date: 1994-02-03 Release date: 1994-05-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin. Biochem.J., 299, 1994
1V81	Solution structures of ubiquitin at 30 bar and 3 kbar Descriptor: Ubiquitin/60s ribosomal protein L40 fusion Authors: Kitahara, R, Yokoyama, S, Akasaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-12-27 Release date: 2005-02-15 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar. J.Mol.Biol., 347, 2005
1UD7	SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7 Descriptor: PROTEIN (UBIQUITIN CORE MUTANT 1D7) Authors: Johnson, E.C, Lazar, G.A, Desjarlais, J.R, Handel, T.M. Deposit date: 1999-04-07 Release date: 1999-05-06 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin. Structure Fold.Des., 7, 1999
1XQQ	Simultaneous determination of protein structure and dynamics Descriptor: ubiquitin Authors: Lindorff-Larsen, K, Best, R.B, DePristo, M.A, Vendruscolo, M, Dobson, C.M. Deposit date: 2004-10-13 Release date: 2005-02-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Simultaneous determination of protein structure and dynamics Nature, 433, 2005
6QK9	A dimeric ubiquitin formed by a single amino acid substitution Descriptor: Polyubiquitin-B Authors: Gabrielsen, M, Kowalczyk, D, Buetow, L, Huang, D.T. Deposit date: 2019-01-28 Release date: 2019-07-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.231 Å) Cite: Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation. Structure, 27, 2019
6QF8	Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method Descriptor: Polyubiquitin-B Authors: ElGamacy, M, Truffault, V, Zhu, H, Coles, M. Deposit date: 2019-01-09 Release date: 2019-04-10 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mapping Local Conformational Landscapes of Proteins in Solution. Structure, 27, 2019
8T48	The N4BP1 CUE-like domain in complex with linear di-Ubiquitin Descriptor: Di-Ubiquitin, GLYCEROL, LITHIUM ION, ... Authors: Schubert, A.F, Harris, S.F. Deposit date: 2023-06-08 Release date: 2024-03-13 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2 Å) Cite: N4BP1 coordinates ubiquitin-dependent crosstalk within the I kappa B kinase family to limit Toll-like receptor signaling and inflammation. Immunity, 57, 2024
8XEP	Crystal structure of a Legionella pneumophila type IV effector in complex with ubiquitin Descriptor: SULFATE ION, Type IV effector MavL, Ubiquitin Authors: Tan, J.X, Wang, X.F, Zhou, Y, Zhu, Y.Q. Deposit date: 2023-12-12 Release date: 2024-05-01 Last modified: 2024-07-24 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Legionella effector LnaB is a phosphoryl AMPylase that impairs phosphosignalling. Nature, 631, 2024
6K2U	Crystal structure of Thr66 ADP-ribosylated ubiquitin Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, MAGNESIUM ION, Polyubiquitin-C, ... Authors: Wang, X, Zhou, Y, Zhu, Y. Deposit date: 2019-05-15 Release date: 2020-03-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.554 Å) Cite: Threonine ADP-Ribosylation of Ubiquitin by a Bacterial Effector Family Blocks Host Ubiquitination. Mol.Cell, 78, 2020
6K4I	The partially disordered conformation of ubiquitin (Q41N variant) Descriptor: ubiquitin Authors: Wakamoto, T, Ikeya, T, Kitazawa, S, Baxter, N.J, Williamson, M.P, Kitahara, R. Deposit date: 2019-05-24 Release date: 2019-10-30 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Paramagnetic relaxation enhancement-assisted structural characterization of a partially disordered conformation of ubiquitin. Protein Sci., 28, 2019
5X3O	Crystal structure of p-DiUb-S65-COOH Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (2.194 Å) Cite: Structure of p-DiUb-S65-COOH at 2.19 Angstroms resolution. To Be Published
5X3N	Crystal structure of DiUb-K6 Descriptor: PHOSPHATE ION, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Method: X-RAY DIFFRACTION (1.649 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution. To Be Published
6KNA	Viral Ubiquitin from Autographa californica Nucleo Polyhedrosis Virus Descriptor: Viral ubiquitin Authors: Negi, H, Reddy, P.P, Das, R. Deposit date: 2019-08-05 Release date: 2020-06-17 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A novel polyubiquitin chain linkage formed by viral Ubiquitin is resistant to host deubiquitinating enzymes. Biochem.J., 477, 2020
5XIT	Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form II Descriptor: E3 ubiquitin-protein ligase RNF168, GLYCEROL, PRASEODYMIUM ION, ... Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
5XDP	K11/48-branched teraubiquitin Descriptor: D-ubiquitin, ubiquitin-B Authors: Liang, L, Gao, S, Tang, S. Deposit date: 2017-03-28 Release date: 2017-04-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.376 Å) Cite: K11/48-branched teraubiquitin To Be Published
6KOX	Relaxed state of S65/T66 double-phosphorylated ubiquitin Descriptor: Polyubiquitin-B Authors: Dong, X, Tang, C. Deposit date: 2019-08-13 Release date: 2019-08-28 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Ubiquitin is double-phosphorylated by PINK1 for enhanced pH-sensitivity of conformational switch. Protein Cell, 10, 2019
5XIS	Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form I Descriptor: E3 ubiquitin-protein ligase RNF168, MAGNESIUM ION, Ubiquitin-40S ribosomal protein S27a, ... Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
5X3M	crystal structure of p-Ub-S65-NH2 Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-05 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (1.818 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution To Be Published
5XPK	Crystal structure of ubiquitin-k6mimic Descriptor: D-ubiquitin, Ubiquitin Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-06-03 Release date: 2017-07-19 Method: X-RAY DIFFRACTION (2.274 Å) Cite: Structure of ubiquitin-k6mimic at 2.27 Angstroms resolution. To Be Published
5XQM	NMR solution structure of SMO1, Sumo homologue in Caenorhabditis elegans Descriptor: Small ubiquitin-related modifier Authors: Gowda, C.M, Surana, P, Das, R. Deposit date: 2017-06-07 Release date: 2017-11-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural and functional analysis of SMO-1, the SUMO homolog in Caenorhabditis elegans PLoS ONE, 12, 2017

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