Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3M1U
DownloadVisualize
BU of 3m1u by Molmil
Crystal structure of a Putative gamma-D-glutamyl-L-diamino acid endopeptidase (DVU_0896) from DESULFOVIBRIO VULGARIS HILDENBOROUGH at 1.75 A resolution
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, CHLORIDE ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-03-05
Release date:2010-04-07
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of a Putative gamma-D-glutamyl-L-diamino acid endopeptidase (DVU_0896) from DESULFOVIBRIO VULGARIS HILDENBOROUGH at 1.75 A resolution
To be Published
5ZW2
DownloadVisualize
BU of 5zw2 by Molmil
FAD complex of PigA
Descriptor: 1,2-ETHANEDIOL, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, ACETATE ION, ...
Authors:Lee, C.-C, Ko, T.-P, Wang, A.H.J.
Deposit date:2018-05-14
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis.
Chembiochem, 20, 2019
5ZU9
DownloadVisualize
BU of 5zu9 by Molmil
Crystal structure of MERS-CoV macro domain in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ORF1a
Authors:Lin, M.-H, Cho, C.-C, Chien, C.-Y, Hsu, C.-H.
Deposit date:2018-05-07
Release date:2019-06-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Crystal structure of MERS-CoV macro domain in complex with ADP
To Be Published
3MPJ
DownloadVisualize
BU of 3mpj by Molmil
Structure of the glutaryl-coenzyme A dehydrogenase
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Glutaryl-CoA dehydrogenase, ...
Authors:Wischgoll, S, Warkentin, E, Boll, M, Ermler, U.
Deposit date:2010-04-27
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for promoting and preventing decarboxylation in glutaryl-coenzyme a dehydrogenases.
Biochemistry, 49, 2010
3MST
DownloadVisualize
BU of 3mst by Molmil
Crystal structure of a Putative nitrate transport protein (TVN0104) from THERMOPLASMA VOLCANIUM at 1.35 A resolution
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-04-29
Release date:2011-02-09
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of a Putative nitrate transport protein (TVN0104) from THERMOPLASMA VOLCANIUM at 1.35 A resolution
To be published
3LZJ
DownloadVisualize
BU of 3lzj by Molmil
RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine
Descriptor: CALCIUM ION, CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), ...
Authors:Wang, M, Beckman, J, Blaha, G, Wang, J, Konigsberg, W.H.
Deposit date:2010-03-01
Release date:2010-05-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP to be inserted opposite 7,8-dihydro-8-oxoguanine .
Biochemistry, 49, 2010
3M0H
DownloadVisualize
BU of 3m0h by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex with L-rhamnose
Descriptor: L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION
Authors:Yoshida, H, Takeda, K, Izumori, K, Kamitori, S.
Deposit date:2010-03-03
Release date:2010-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Elucidation of the role of Ser329 and the C-terminal region in the catalytic activity of Pseudomonas stutzeri L-rhamnose isomerase
Protein Eng.Des.Sel., 23, 2010
3MQT
DownloadVisualize
BU of 3mqt by Molmil
Crystal structure of a mandelate racemase/muconate lactonizing enzyme from Shewanella pealeana
Descriptor: MAGNESIUM ION, Mandelate racemase/muconate lactonizing protein
Authors:Agarwal, R, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-04-28
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal STRUCTURE OF A MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FROM SHEWANELLA PEALEANA
To be Published
7WB4
DownloadVisualize
BU of 7wb4 by Molmil
Cryo-EM structure of the NR subunit from X. laevis NPC
Descriptor: GATOR complex protein SEC13, MGC154553 protein, MGC83295 protein, ...
Authors:Huang, G, Zhan, X, Shi, Y.
Deposit date:2021-12-15
Release date:2022-03-02
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Cryo-EM structure of the nuclear ring from Xenopus laevis nuclear pore complex.
Cell Res., 32, 2022
3M3L
DownloadVisualize
BU of 3m3l by Molmil
PEPA bound to the ligand binding domain of GluA2 (flop form)
Descriptor: 2-[2,6-difluoro-4-({2-[(phenylsulfonyl)amino]ethyl}sulfanyl)phenoxy]acetamide, GLUTAMIC ACID, Glutamate receptor 2, ...
Authors:Ptak, C.P, Ahmed, A.H, Oswald, R.E.
Deposit date:2010-03-09
Release date:2010-03-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Molecular mechanism of flop selectivity and subsite recognition for an AMPA receptor allosteric modulator: structures of GluA2 and GluA3 in complexes with PEPA.
Biochemistry, 49, 2010
3M5K
DownloadVisualize
BU of 3m5k by Molmil
Crystal structure of Putative NADH dehydrogenase/NAD(P)H nitroreductase (BDI_1728) from Parabacteroides distasonis ATCC 8503 at 1.86 A resolution
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, Putative NADH dehydrogenase/NAD(P)H nitroreductase, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-03-12
Release date:2010-05-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of Putative NADH dehydrogenase/NAD(P)H nitroreductase (BDI_1728) from Parabacteroides distasonis ATCC 8503 at 1.86 A resolution
To be Published
3M4Y
DownloadVisualize
BU of 3m4y by Molmil
Structural characterization of the subunit A mutant P235A of the A-ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
Authors:Manimekalai, M.S, Balakrishna, A.M, Kumar, A, Priya, R, Biukovic, G, Jeyakanthan, J, Gruber, G.
Deposit date:2010-03-12
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding.
J.Mol.Biol., 401, 2010
6AAD
DownloadVisualize
BU of 6aad by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mTmdZLys
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, N6-[({3-[3-(trifluoromethyl)-3H-diaziren-3-yl]phenyl}methoxy)carbonyl]-L-lysine, ...
Authors:Yanagisawa, T, Kuratani, M, Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.444 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
3M9C
DownloadVisualize
BU of 3m9c by Molmil
Crystal structure of the membrane domain of respiratory complex I from Escherichia coli
Descriptor: NADH-quinone oxidoreductase subunit NuoL, NADH-quinone oxidoreductase subunit NuoM, NADH-quinone oxidoreductase subunit NuoN, ...
Authors:Efremov, R.G, Baradaran, R, Sazanov, L.A.
Deposit date:2010-03-22
Release date:2010-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:The architecture of respiratory complex I
Nature, 465, 2010
7W1F
DownloadVisualize
BU of 7w1f by Molmil
Crystal structure of the dNTP triphosphohydrolase PA1124 from Pseudomonas aeruginosa
Descriptor: NICKEL (II) ION, Probable deoxyguanosinetriphosphate triphosphohydrolase
Authors:Oh, H.B, Song, W.S, Lee, K.C, Park, S.C, Yoon, S.I.
Deposit date:2021-11-19
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural analysis of the dNTP triphosphohydrolase PA1124 from Pseudomonas aeruginosa.
Biochem.Biophys.Res.Commun., 589, 2022
6A9W
DownloadVisualize
BU of 6a9w by Molmil
Structure of the bifunctional DNA primase-polymerase from phage NrS-1
Descriptor: Primase
Authors:Guo, H.J, Li, M.J, Wang, T.L, Wu, H, Zhou, H, Xu, C.Y, Liu, X.P, Yu, F, He, J.H.
Deposit date:2018-07-16
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure and biochemical studies of the bifunctional DNA primase-polymerase from phage NrS-1.
Biochem. Biophys. Res. Commun., 510, 2019
6AAQ
DownloadVisualize
BU of 6aaq by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with BCNLys
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, N6-({[(1R,8S,9s)-bicyclo[6.1.0]non-4-yn-9-yl]methoxy}carbonyl)-L-lysine, ...
Authors:Yanagisawa, T, Kuratani, M, Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6A57
DownloadVisualize
BU of 6a57 by Molmil
Structure of histone demethylase REF6 complexed with DNA
Descriptor: DNA (5'-D(*CP*TP*TP*TP*CP*TP*CP*TP*GP*TP*TP*TP*TP*GP*TP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*AP*AP*AP*AP*CP*AP*GP*AP*GP*AP*AP*A)-3'), GLYCEROL, ...
Authors:Tian, Z, Chen, Z.
Deposit date:2018-06-22
Release date:2019-06-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of REF6 and its complex with DNA reveal diverse recognition mechanisms.
Cell Discov, 6, 2020
3MH7
DownloadVisualize
BU of 3mh7 by Molmil
HtrA proteases are activated by a conserved mechanism that can be triggered by distinct molecular cues
Descriptor: 5-mer peptide, Protease do
Authors:Krojer, T, Sawa, J, Huber, R, Clausen, T.
Deposit date:2010-04-07
Release date:2010-06-30
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (2.961 Å)
Cite:HtrA proteases have a conserved activation mechanism that can be triggered by distinct molecular cues
Nat.Struct.Mol.Biol., 17, 2010
3MCX
DownloadVisualize
BU of 3mcx by Molmil
Crystal structure of SusD superfamily protein (BT_2365) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.49 A resolution
Descriptor: ACETATE ION, GLYCEROL, SusD superfamily protein, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-03-29
Release date:2010-05-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of SusD superfamily protein (BT_2365) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.49 A resolution
To be Published
3MDJ
DownloadVisualize
BU of 3mdj by Molmil
ER Aminopeptidase, ERAP1, Bound to the Zinc Aminopeptidase Inhibitor, Bestatin
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nguyen, T.T, Stern, L.J.
Deposit date:2010-03-30
Release date:2011-03-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural basis for antigenic peptide precursor processing by the endoplasmic reticulum aminopeptidase ERAP1.
Nat.Struct.Mol.Biol., 18, 2011
6A6C
DownloadVisualize
BU of 6a6c by Molmil
Crystal structure of carbohydrate-binding module family 56 beta-1,3-glucan binding domain
Descriptor: Beta-1,3-glucanase
Authors:Qin, Z, Lin, S.
Deposit date:2018-06-27
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of carbohydrate-binding module family 56 beta-1,3-glucan binding domain
To Be Published
3MIE
DownloadVisualize
BU of 3mie by Molmil
Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) with bound azide obtained by soaking (50mM NaN3)
Descriptor: AZIDE ION, COPPER (II) ION, GLYCEROL, ...
Authors:Chufan, E.E, Eipper, B.A, Mains, R.E, Amzel, L.M.
Deposit date:2010-04-10
Release date:2010-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:Differential Reactivity Between the Two Copper Sites of Peptidylglycine alpha-Hydroxylating Monooxygenase (PHM)
J.Am.Chem.Soc., 132, 2010
7WKK
DownloadVisualize
BU of 7wkk by Molmil
Cryo-EM structure of the IR subunit from X. laevis NPC
Descriptor: Aaas-prov protein, IL4I1 protein, MGC83295 protein, ...
Authors:Huang, G, Zhan, X, Shi, Y.
Deposit date:2022-01-10
Release date:2022-03-30
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM structure of the inner ring from the Xenopus laevis nuclear pore complex.
Cell Res., 32, 2022
3MFR
DownloadVisualize
BU of 3mfr by Molmil
CASK-4M CaM Kinase Domain, native
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Peripheral plasma membrane protein CASK
Authors:Wahl, M.C, Mukherjee, K.
Deposit date:2010-04-03
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Evolution of CASK into a Mg2+-sensitive kinase.
Sci.Signal., 3, 2010

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon