Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3J0J
DownloadVisualize
BU of 3j0j by Molmil
Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
Authors:Lau, W.C.Y, Rubinstein, J.L.
Deposit date:2011-08-24
Release date:2011-12-14
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.
Nature, 481, 2012
6PQV
DownloadVisualize
BU of 6pqv by Molmil
E. coli ATP Synthase State 1e
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Stewart, A.G, Sobti, M, Walshe, J.L.
Deposit date:2019-07-10
Release date:2020-06-03
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures provide insight into how E. coli F1FoATP synthase accommodates symmetry mismatch.
Nat Commun, 11, 2020
7JG7
DownloadVisualize
BU of 7jg7 by Molmil
Cryo-EM structure of bedaquiline-free Mycobacterium smegmatis ATP synthase rotational state 3 (backbone model)
Descriptor: ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit a, ...
Authors:Guo, H, Courbon, G.M, Rubinstein, J.L.
Deposit date:2020-07-18
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.
Nature, 589, 2021
3J9T
DownloadVisualize
BU of 3j9t by Molmil
Yeast V-ATPase state 1
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
5YBI
DownloadVisualize
BU of 5ybi by Molmil
Structure of the bacterial pathogens ATPase with substrate AMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable ATP synthase SpaL/MxiB, ...
Authors:Mu, Z.X, Gao, X.P, Cui, S.
Deposit date:2017-09-05
Release date:2018-06-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.268 Å)
Cite:Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase FromShigella flexneri.
Front Microbiol, 9, 2018
7L1S
DownloadVisualize
BU of 7l1s by Molmil
PS3 F1-ATPase Pi-bound Dwell
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ...
Authors:Sobti, M, Ueno, H, Noji, H, Stewart, A.G.
Deposit date:2020-12-15
Release date:2021-07-21
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The six steps of the complete F 1 -ATPase rotary catalytic cycle.
Nat Commun, 12, 2021
7L1Q
DownloadVisualize
BU of 7l1q by Molmil
PS3 F1-ATPase Binding/TS Dwell
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
Authors:Sobti, M, Ueno, H, Noji, H, Stewart, A.G.
Deposit date:2020-12-15
Release date:2021-07-21
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The six steps of the complete F 1 -ATPase rotary catalytic cycle.
Nat Commun, 12, 2021
7L1R
DownloadVisualize
BU of 7l1r by Molmil
PS3 F1-ATPase Hydrolysis Dwell
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
Authors:Sobti, M, Ueno, H, Noji, H, Stewart, A.G.
Deposit date:2020-12-15
Release date:2021-07-21
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The six steps of the complete F 1 -ATPase rotary catalytic cycle.
Nat Commun, 12, 2021
3L0O
DownloadVisualize
BU of 3l0o by Molmil
Structure of RNA-free Rho transcription termination factor from Thermotoga maritima
Descriptor: SODIUM ION, SULFATE ION, Transcription termination factor rho, ...
Authors:Canals, A, Uson, I, Coll, M.
Deposit date:2009-12-10
Release date:2010-05-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Structure of RNA-Free Rho Termination Factor Indicates a Dynamic Mechanism of Transcript Capture
J.Mol.Biol., 400, 2010
3J9V
DownloadVisualize
BU of 3j9v by Molmil
Yeast V-ATPase state 3
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
3ND9
DownloadVisualize
BU of 3nd9 by Molmil
Structural characterization for the nucleotide binding ability of subunit A of the A1AO ATP synthase
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, V-type ATP synthase alpha chain
Authors:Kumar, A, Jeyakanthan, J, Gruber, G.
Deposit date:2010-06-07
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase.
J.Mol.Biol., 408, 2011
3ND8
DownloadVisualize
BU of 3nd8 by Molmil
Structural characterization for the nucleotide binding ability of subunit A of the A1AO ATP synthase
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, ...
Authors:Kumar, A, Gruber, G.
Deposit date:2010-06-07
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase.
J.Mol.Biol., 408, 2011
3OE7
DownloadVisualize
BU of 3oe7 by Molmil
Structure of four mutant forms of yeast f1 ATPase: gamma-I270T
Descriptor: ATP synthase subunit alpha, ATP synthase subunit beta, ATP synthase subunit delta, ...
Authors:Arsenieva, D, Symersky, J, Wang, Y, Pagadala, V, Mueller, D.M.
Deposit date:2010-08-12
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Crystal structures of mutant forms of the yeast f1 ATPase reveal two modes of uncoupling.
J.Biol.Chem., 285, 2010
3J9U
DownloadVisualize
BU of 3j9u by Molmil
Yeast V-ATPase state 2
Descriptor: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J, Benlekbir, S, Rubinstein, J.L.
Deposit date:2015-02-23
Release date:2015-05-13
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.
Nature, 521, 2015
5VOY
DownloadVisualize
BU of 5voy by Molmil
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 2)
Descriptor: V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J.
Deposit date:2017-05-03
Release date:2017-06-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (7.9 Å)
Cite:Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog., 13, 2017
5ZE9
DownloadVisualize
BU of 5ze9 by Molmil
Crystal structure of AMP-PNP bound mutant A3B3 complex from Enterococcus hirae V-ATPase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, MAGNESIUM ION, ...
Authors:Maruyama, S, Suzuki, K, Sasaki, H, Mizutani, K, Saito, Y, Imai, F.L, Ishizuka-Katsura, Y, Shirouzu, M, Ichiro, Y, Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
3OEE
DownloadVisualize
BU of 3oee by Molmil
Structure of four mutant forms of yeast F1 ATPase: alpha-F405S
Descriptor: ATP synthase subunit alpha, ATP synthase subunit beta, ATP synthase subunit delta, ...
Authors:Arsenieva, D, Symersky, J, Wang, Y, Pagadala, V, Mueller, D.M.
Deposit date:2010-08-12
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Structure of four mutant forms of yeast F1 ATPase: alpha-F405S
To be Published
3M4Y
DownloadVisualize
BU of 3m4y by Molmil
Structural characterization of the subunit A mutant P235A of the A-ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
Authors:Manimekalai, M.S, Balakrishna, A.M, Kumar, A, Priya, R, Biukovic, G, Jeyakanthan, J, Gruber, G.
Deposit date:2010-03-12
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding.
J.Mol.Biol., 401, 2010
3P20
DownloadVisualize
BU of 3p20 by Molmil
Crystal structure of vanadate bound subunit A of the A1AO ATP synthase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
Authors:Manimekalai, M.S.S, Kumar, A, Jeyakanthan, J, Gruber, G.
Deposit date:2010-10-01
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase.
J.Mol.Biol., 408, 2011
3OFN
DownloadVisualize
BU of 3ofn by Molmil
Structure of four mutant forms of yeast F1 ATPase: alpha-N67I
Descriptor: ATP synthase subunit alpha, ATP synthase subunit beta, ATP synthase subunit delta, ...
Authors:Arsenieva, D, Symersky, J, Wang, Y, Pagadala, V, Mueller, D.M.
Deposit date:2010-08-15
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of mutant forms of the yeast f1 ATPase reveal two modes of uncoupling.
J.Biol.Chem., 285, 2010
8KI3
DownloadVisualize
BU of 8ki3 by Molmil
Structure of the human ATP synthase bound to bedaquiline (composite)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase F(0) complex subunit B1, ...
Authors:Lai, Y, Zhang, Y, Gong, H.
Deposit date:2023-08-22
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
7YRY
DownloadVisualize
BU of 7yry by Molmil
F1-ATPase of Acinetobacter baumannii
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
Authors:Saw, W.-G, Grueber, G.
Deposit date:2022-08-11
Release date:2023-06-21
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Atomic insights of an up and down conformation of the Acinetobacter baumannii F 1 -ATPase subunit epsilon and deciphering the residues critical for ATP hydrolysis inhibition and ATP synthesis.
Faseb J., 37, 2023
8PEX
DownloadVisualize
BU of 8pex by Molmil
Rho P167L-ATPgS-Psu complex I
Descriptor: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Polarity suppression protein, ...
Authors:Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
Deposit date:2023-06-15
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Rho P167L-ATPgS-Psu complex I
To Be Published
8PEY
DownloadVisualize
BU of 8pey by Molmil
Rho P167L-ATPgS-Psu complex II
Descriptor: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Polarity suppression protein, ...
Authors:Gjorgjevikj, D, Wahl, M.C, Hilal, T, Loll, B.
Deposit date:2023-06-15
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Rho P167L-ATPgS-Psu complex II
To Be Published
8Q3O
DownloadVisualize
BU of 8q3o by Molmil
Bacterial transcription termination factor Rho + pppGpp
Descriptor: MAGNESIUM ION, Transcription termination factor Rho, guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)
Authors:Said, N, Hilal, T, Wahl, M.C.
Deposit date:2023-08-04
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Transcription termination factor rho polymerizes under stress.
Biorxiv, 2023

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon