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6L8G
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BU of 6l8g by Molmil
High resolution structure of YoeB in complex with YefM C-terminus(46N-83V) from Staphylococcus aureus.
Descriptor: Antitoxin, YoeB
Authors:Yue, J, Xue, L.
Deposit date:2019-11-06
Release date:2020-11-11
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural insight into the mechanism of conditional cooperativity in the YoeB-YefM toxin-antitoxin system
To Be Published
6X7Z
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BU of 6x7z by Molmil
Inositol-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Descriptor: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,2-ETHANEDIOL, Antifreeze protein, ...
Authors:Guo, S, Davies, P.L.
Deposit date:2020-06-01
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural Basis of Ligand Selectivity by a Bacterial Adhesin Lectin Involved in Multispecies Biofilm Formation.
Mbio, 12, 2021
1SY2
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BU of 1sy2 by Molmil
1.0 A Crystal Structure of D129A/L130A Mutant of Nitrophorin 4
Descriptor: AMMONIUM ION, Nitrophorin 4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Maes, E.M, Weichsel, A, Andersen, J.F, Shepley, D, Montfort, W.R.
Deposit date:2004-03-31
Release date:2004-06-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1 Å)
Cite:Role of binding site loops in controlling nitric oxide release: structure and kinetics of mutant forms of nitrophorin 4
Biochemistry, 43, 2004
6X7Y
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BU of 6x7y by Molmil
N-acetyl-glucosamine-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Guo, S, Davies, P.L.
Deposit date:2020-05-31
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural Basis of Ligand Selectivity by a Bacterial Adhesin Lectin Involved in Multispecies Biofilm Formation.
Mbio, 12, 2021
3A02
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BU of 3a02 by Molmil
Crystal structure of Aristaless homeodomain
Descriptor: CADMIUM ION, CHLORIDE ION, Homeobox protein aristaless
Authors:Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
Deposit date:2009-02-28
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
6X9P
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BU of 6x9p by Molmil
2-deoxyribose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Descriptor: 1,2-ETHANEDIOL, 2-deoxy-beta-D-ribopyranose, Antifreeze protein, ...
Authors:Guo, S, Davies, P.L.
Deposit date:2020-06-03
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural Basis of Ligand Selectivity by a Bacterial Adhesin Lectin Involved in Multispecies Biofilm Formation.
Mbio, 12, 2021
6X8Y
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BU of 6x8y by Molmil
Ribose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Descriptor: 1,2-ETHANEDIOL, Antifreeze protein, CALCIUM ION, ...
Authors:Guo, S, Davies, P.L.
Deposit date:2020-06-02
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural Basis of Ligand Selectivity by a Bacterial Adhesin Lectin Involved in Multispecies Biofilm Formation.
Mbio, 12, 2021
6X8D
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BU of 6x8d by Molmil
Arabinose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain
Descriptor: 1,2-ETHANEDIOL, Antifreeze protein, CALCIUM ION, ...
Authors:Guo, S, Davies, P.L.
Deposit date:2020-06-01
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural Basis of Ligand Selectivity by a Bacterial Adhesin Lectin Involved in Multispecies Biofilm Formation.
Mbio, 12, 2021
6RYN
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BU of 6ryn by Molmil
Structure of conglutinin carbohydrate recognition domain with GlcNAc-alpha-1-phosphate bound
Descriptor: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, CALCIUM ION, Conglutinin
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2019-06-10
Release date:2019-10-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic-resolution crystal structures of the immune protein conglutinin from cow reveal specific interactions of its binding site withN-acetylglucosamine.
J.Biol.Chem., 294, 2019
4W5L
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BU of 4w5l by Molmil
Crystal structure of a prp peptide
Descriptor: PrP peptide
Authors:Yu, L, Lee, S.-J, Yee, V.
Deposit date:2014-08-18
Release date:2015-05-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1 Å)
Cite:Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations.
Biochemistry, 54, 2015
6PO6
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BU of 6po6 by Molmil
MicroED Structure of a Natural Product VFAThiaGlu
Descriptor: YFAThiaGlu
Authors:Halaby, S, Gonen, T, Ting, C.P, Funk, M.A, van der Donk, W.A.
Deposit date:2019-07-03
Release date:2019-08-07
Last modified:2023-11-15
Method:ELECTRON CRYSTALLOGRAPHY (1 Å)
Cite:Use of a scaffold peptide in the biosynthesis of amino acid-derived natural products.
Science, 365, 2019
2YYX
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BU of 2yyx by Molmil
The Y65A mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
7Q1Q
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BU of 7q1q by Molmil
De novo designed homo-dimeric antiparallel helices Homomer-S
Descriptor: ACETATE ION, Homomer-S
Authors:Shanmugaratnam, S, Rhys, G.G, Dawson, W.M, Woolfson, D.N, Hocker, B.
Deposit date:2021-10-20
Release date:2022-07-20
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1 Å)
Cite:De novo designed peptides for cellular delivery and subcellular localisation.
Nat.Chem.Biol., 18, 2022
8CHP
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BU of 8chp by Molmil
The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfinyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
Descriptor: (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfinyl-5-ethenyl-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one, Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:Meyners, C, Purder, P.L, Hausch, F.
Deposit date:2023-02-08
Release date:2023-09-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1 Å)
Cite:Deconstructing Protein Binding of Sulfonamides and Sulfonamide Analogues.
Jacs Au, 3, 2023
1IR0
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BU of 1ir0 by Molmil
OXIDIZED [4Fe-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor: Ferredoxin, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Fukuyama, K, Okada, T, Kakuta, Y, Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
6ZWY
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BU of 6zwy by Molmil
OMPD-domain of human UMPS in complex with UMP at 1.0 Angstroms resolution
Descriptor: GLYCEROL, PROLINE, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Tittmann, K, Rindfleisch, S.
Deposit date:2020-07-29
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1 Å)
Cite:Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis
Nat Catal, 5, 2022
6ZX1
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BU of 6zx1 by Molmil
OMPD-domain of human UMPS in complex with 6-Aza-UMP at 1.0 Angstroms resolution
Descriptor: 6-AZA URIDINE 5'-MONOPHOSPHATE, PROLINE, SULFATE ION, ...
Authors:Tittmann, K, Rindfleisch, S, Krull, M.
Deposit date:2020-07-29
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1 Å)
Cite:Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis
Nat Catal, 5, 2022
5IDB
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BU of 5idb by Molmil
Crystal structure of CGL1 from Crassostrea gigas, mannose-bound form (CGL1/MAN2)
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Natterin-3, alpha-D-mannopyranose, ...
Authors:Unno, H.
Deposit date:2016-02-24
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1 Å)
Cite:Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Mannose-Specific Lectin CGL1 from the Pacific Oyster Crassostrea gigas.
Sci Rep, 6, 2016
4WJX
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BU of 4wjx by Molmil
Crystal structure of human chitotriosidase-1 catalytic domain at 1.0 A resolution
Descriptor: Chitotriosidase-1, L(+)-TARTARIC ACID
Authors:Fadel, F, Zhao, Y, Cachau, R, Cousido-Siah, A, Ruiz, F.X, Harlos, K, Howard, E, Mitschler, A, Podjarny, A.
Deposit date:2014-10-01
Release date:2015-07-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:New insights into the enzymatic mechanism of human chitotriosidase (CHIT1) catalytic domain by atomic resolution X-ray diffraction and hybrid QM/MM
Acta Crystallogr.,Sect.D, 71, 2015
6IGG
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BU of 6igg by Molmil
Crystal structure of FT condition 1
Descriptor: 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T
Authors:Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
8EY3
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BU of 8ey3 by Molmil
Contact-dependent growth inhibition (CDI) immunity protein from E. coli O32:H37
Descriptor: Cys_rich_CPCC domain-containing protein, FE (III) ION, SODIUM ION
Authors:Michalska, K, Stols, L, Eschenfeldt, W, Goulding, C.W, Hayes, C.S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-10-26
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1 Å)
Cite:Contact-dependent growth inhibition (CDI) immunity protein from E. coli O32:H37
To Be Published
6UDR
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BU of 6udr by Molmil
S2 symmetric peptide design number 3 crystal form 1, Lurch
Descriptor: S2-3, Lurch crystal form 1
Authors:Mulligan, V.K, Kang, C.S, Antselovich, I, Sawaya, M.R, Yeates, T.O, Baker, D.
Deposit date:2019-09-19
Release date:2020-09-23
Last modified:2020-12-02
Method:X-RAY DIFFRACTION (1 Å)
Cite:Computational design of mixed chirality peptide macrocycles with internal symmetry.
Protein Sci., 29, 2020
5IVN
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BU of 5ivn by Molmil
BC2 nanobody in complex with the BC2 peptide tag
Descriptor: BC2-nanobody, Cadherin derived peptide
Authors:Braun, M.B, Stehle, T.
Deposit date:2016-03-21
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Peptides in headlock - a novel high-affinity and versatile peptide-binding nanobody for proteomics and microscopy.
Sci Rep, 6, 2016
6Y0H
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BU of 6y0h by Molmil
High resolution structure of GH11 xylanase from Nectria haematococca
Descriptor: Endo-1,4-beta-xylanase
Authors:Andaleeb, H, Betzel, C, Perbandt, M, Brognaro, H.
Deposit date:2020-02-07
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-resolution crystal structure and biochemical characterization of a GH11 endoxylanase from Nectria haematococca.
Sci Rep, 10, 2020
4XZH
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BU of 4xzh by Molmil
Crystal structure of human Aldose Reductase complexed with NADP+ and JF0048
Descriptor: Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, [3-(4-chloro-3-nitrobenzyl)-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl]acetic acid
Authors:Cousido-Siah, A, Ruiz, F.X, Mitschler, A, Dominguez, M, de Lera, A.R, Farres, J, Pares, X, Podjarny, A.
Deposit date:2015-02-04
Release date:2015-11-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structural Determinants of the Selectivity of 3-Benzyluracil-1-acetic Acids toward Human Enzymes Aldose Reductase and AKR1B10.
Chemmedchem, 10, 2015

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PDB entries from 2024-08-14

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