PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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6LD3	Zika NS5 polymerase domain Descriptor: 2,4-dimethoxy-5-thiophen-2-yl-benzoic acid, RNA-directed RNA polymerase NS5, ZINC ION, ... Authors: El Sahili, A, Lescar, J. Deposit date: 2019-11-20 Release date: 2020-08-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Non-nucleoside Inhibitors of Zika Virus RNA-Dependent RNA Polymerase. J.Virol., 94, 2020
2FYM	Crystal structure of E. coli enolase complexed with the minimal binding segment of RNase E. Descriptor: Enolase, MAGNESIUM ION, Ribonuclease E Authors: Chandran, V, Luisi, B.F. Deposit date: 2006-02-08 Release date: 2006-02-28 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Recognition of Enolase in the Escherichia coli RNA Degradosome J.Mol.Biol., 358, 2006
1MUK	reovirus lambda3 native structure Descriptor: MINOR CORE PROTEIN LAMBDA 3 Authors: Tao, Y, Farsetta, D.L, Nibert, M.L, Harrison, S.C. Deposit date: 2002-09-24 Release date: 2002-12-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: RNA Synthesis in a Cage-Structural Studies of Reovirus Polymerase lambda3 Cell(Cambridge,Mass.), 111, 2002
7YNC	Cryo-EM structure of Cas7-11-crRNA bound to target RNA-3 Descriptor: CRISPR-associated RAMP family protein, Target RNA-3 (28-MER), crRNA (38-MER) Authors: Huo, Y, Dong, Q, Zhao, H, Jiang, T. Deposit date: 2022-07-30 Release date: 2023-02-01 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.14 Å) Cite: Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector. Nat Microbiol, 8, 2023
7YNA	Cryo-EM structure of Cas7-11-crRNA bound to target RNA-1 Descriptor: CRISPR-associated RAMP family protein, Target RNA-1 (25-MER), crRNA (38-MER) Authors: Huo, Y, Dong, Q, Zhao, H, Jiang, T. Deposit date: 2022-07-30 Release date: 2023-02-01 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.64 Å) Cite: Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector. Nat Microbiol, 8, 2023
7YNB	Cryo-EM structure of Cas7-11-crRNA bound to target RNA-2 Descriptor: CRISPR-associated RAMP family protein, Target RNA-2 (28-MER), crRNA (38-MER) Authors: Huo, Y, Dong, Q, Zhao, H, Jiang, T. Deposit date: 2022-07-30 Release date: 2023-02-01 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.46 Å) Cite: Cryo-EM structure and protease activity of the type III-E CRISPR-Cas effector. Nat Microbiol, 8, 2023
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
4PJS	Crystal structure of designed (SeMet)-cPPR-NRE protein Descriptor: CALCIUM ION, Pentatricopeptide repeat protein Authors: Coquille, S.C, Filipovska, A, Chia, T.S, Rajappa, L, Lingford, J.P, Razif, M.F.M, Thore, S, Rackham, O. Deposit date: 2014-05-12 Release date: 2014-12-24 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: An artificial PPR scaffold for programmable RNA recognition. Nat Commun, 5, 2014
4PJQ	Crystal structure of designed cPPR-polyG protein Descriptor: Pentatricopeptide repeat protein Authors: Coquille, S.C, Filipovska, A, Chia, T.S, Rajappa, L, Lingford, J.P, Razif, M.F.M, Thore, S, Rackham, O. Deposit date: 2014-05-12 Release date: 2014-12-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.353 Å) Cite: An artificial PPR scaffold for programmable RNA recognition. Nat Commun, 5, 2014
4PJR	Crystal structure of designed cPPR-NRE protein Descriptor: MAGNESIUM ION, Pentatricopeptide repeat protein Authors: Coquille, S.C, Filipovska, A, Chia, T.S, Rajappa, L, Lingford, J.P, Razif, M.F.M, Thore, S, Rackham, O. Deposit date: 2014-05-12 Release date: 2014-12-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: An artificial PPR scaffold for programmable RNA recognition. Nat Commun, 5, 2014
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3VA3	Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.714 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
7RYG	A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S Descriptor: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, 16S Ribosomal RNA, 23S ribosomal RNA, ... Authors: Morgan, C.E, Yu, E.W. Deposit date: 2021-08-25 Release date: 2022-02-02 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.38 Å) Cite: An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii. Mbio, 13, 2022
7RYF	A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S Descriptor: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, 16S Ribosomal RNA, 23S ribosomal RNA, ... Authors: Morgan, C.E, Yu, E.W. Deposit date: 2021-08-25 Release date: 2022-02-02 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.65 Å) Cite: An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii. Mbio, 13, 2022
3V9X	Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site Descriptor: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6XQB	SARS-CoV-2 RdRp/RNA complex Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ... Authors: Liu, B, Shi, W, Yang, Y. Deposit date: 2020-07-09 Release date: 2020-07-29 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of SARS-CoV-2 RdRp/RNA complex at 3.4 Angstroms resolution To Be Published
6XJF	X-ray crystal structure of Pyrococcus furiosus general transcription factor TFE-alpha (SeMet labeled protein) Descriptor: Transcription factor E Authors: Murakami, K.S, Jun, S.H. Deposit date: 2020-06-23 Release date: 2020-07-08 Last modified: 2021-01-20 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
8IBX	Structure of R2 with 3'UTR and DNA in unwinding state Descriptor: 3'UTR, DNA (60-MER), Reverse transcriptase-like protein, ... Authors: Deng, P, Tan, S, Wang, J, Liu, J.J. Deposit date: 2023-02-10 Release date: 2023-09-20 Method: ELECTRON MICROSCOPY (3.74 Å) Cite: Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon. Cell, 186, 2023
8IBW	Structure of R2 with 3'UTR and DNA in binding state Descriptor: 3'UTR, DNA (60-MER), Reverse transcriptase-like protein, ... Authors: Deng, P, Tan, S, Wang, J, Liu, J.J. Deposit date: 2023-02-10 Release date: 2023-09-20 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon. Cell, 186, 2023
8IBZ	Structure of R2 with 5'ORF and 3'UTR Descriptor: 5ORF-linker-3UTR, Reverse transcriptase-like protein, ZINC ION Authors: Deng, P, Tan, S, Wang, J, Liu, J.J. Deposit date: 2023-02-10 Release date: 2023-09-20 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon. Cell, 186, 2023
3D1D	Hexagonal crystal structure of Tas3 C-terminal alpha motif Descriptor: RNA-induced transcriptional silencing complex protein tas3 Authors: Li, H, Patel, D.J. Deposit date: 2008-05-05 Release date: 2009-04-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: An alpha motif at Tas3 C terminus mediates RITS cis spreading and promotes heterochromatic gene silencing. Mol.Cell, 34, 2009
3CQS	A 3'-OH, 2',5'-phosphodiester substitution in the hairpin ribozyme active site reveals similarities with protein ribonucleases Descriptor: 13-mer substrate strand with 3'-OH, 2',5'-phosphodiester covalently linking 5th and 6th nucleotides, 19-mer ribozyme strand, ... Authors: Torelli, A.T, Spitale, R.C, Krucinska, J, Wedekind, J.E. Deposit date: 2008-04-03 Release date: 2008-05-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Shared traits on the reaction coordinates of ribonuclease and an RNA enzyme Biochem.Biophys.Res.Commun., 371, 2008
3D1B	Tetragonal crystal structure of Tas3 C-terminal alpha motif Descriptor: RNA-induced transcriptional silencing complex protein tas3 Authors: Li, H, Patel, D.J. Deposit date: 2008-05-05 Release date: 2009-04-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.7 Å) Cite: An alpha motif at Tas3 C terminus mediates RITS cis spreading and promotes heterochromatic gene silencing. Mol.Cell, 34, 2009
7NAS	Bacterial 30S ribosomal subunit assembly complex state A (multibody refinement for body domain of 30S ribosome) Descriptor: 16S rRNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ... Authors: Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S. Deposit date: 2021-01-25 Release date: 2021-07-07 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.31 Å) Cite: A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv, 7, 2021

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