Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7BM3
DownloadVisualize
BU of 7bm3 by Molmil
Notum Rosmarinic acid complex
Descriptor: (2R)-3-(3,4-dihydroxyphenyl)-2-{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}propanoic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhao, Y, Jones, E.Y.
Deposit date:2021-01-19
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Notum Inhibitor
To Be Published
6WJO
DownloadVisualize
BU of 6wjo by Molmil
Crystal structure of wild-type Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis bound to tyrosine
Descriptor: Arginine repressor, SODIUM ION, SULFATE ION, ...
Authors:Nascimento, A.F.Z, Hernandez-Gonzalez, J.E, de Morais, M.A.B, Murakami, M.T, Carareto, C.M.A, Arni, R.K, Mariutti, R.B.
Deposit date:2020-04-14
Release date:2020-04-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.693 Å)
Cite:A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor.
Biochim Biophys Acta Gen Subj, 1864, 2020
6WJR
DownloadVisualize
BU of 6wjr by Molmil
Apo structure of the FMN riboswitch aptamer domain in the presence of sulfate
Descriptor: MAGNESIUM ION, RNA (112-MER), SULFATE ION
Authors:Wilt, H.M, Wang, Y.-X, Stagno, J.R.
Deposit date:2020-04-14
Release date:2020-09-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations.
J Struct Biol X, 4, 2020
2YVQ
DownloadVisualize
BU of 2yvq by Molmil
Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
Descriptor: Carbamoyl-phosphate synthase
Authors:Xie, Y, Ihsanawati, Kishishita, S, Murayama, K, Takemoto, C, Shirozu, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-04-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens
To be Published
6WK2
DownloadVisualize
BU of 6wk2 by Molmil
SETD3 mutant (N255V) in Complex with an Actin Peptide with His73 Replaced with Methionine
Descriptor: 1,2-ETHANEDIOL, Actin, cytoplasmic 2, ...
Authors:Dai, S, Horton, J.R, Cheng, X.
Deposit date:2020-04-15
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Characterization of SETD3 methyltransferase-mediated protein methionine methylation.
J.Biol.Chem., 295, 2020
6WKH
DownloadVisualize
BU of 6wkh by Molmil
Crystal structure of pentalenene synthase mutant F76W complexed with 12,13-difluorofarnesyl diphosphate
Descriptor: (2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate, Pentalenene synthase
Authors:Prem Kumar, R, Matos, J.O, Oprian, D.D.
Deposit date:2020-04-16
Release date:2020-08-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Mechanism Underlying Anti-Markovnikov Addition in the Reaction of Pentalenene Synthase.
Biochemistry, 59, 2020
2YY9
DownloadVisualize
BU of 2yy9 by Molmil
Crystal structure of BTB domain from mouse HKR3
Descriptor: Zinc finger and BTB domain-containing protein 48
Authors:Kishishita, S, Nishino, A, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2008-04-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of BTB domain from mouse HKR3
To be Published
6WVD
DownloadVisualize
BU of 6wvd by Molmil
Human JAGN1
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Green fluorescent protein, Protein jagunal homolog 1 chimera
Authors:Yang, Y, Liu, S, Li, W.
Deposit date:2020-05-05
Release date:2021-01-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Termini restraining of small membrane proteins enables structure determination at near-atomic resolution.
Sci Adv, 6, 2020
6WVN
DownloadVisualize
BU of 6wvn by Molmil
Crystal Structure of Nsp16-Nsp10 from SARS-CoV-2 in Complex with 7-methyl-GpppA and S-Adenosylmethionine.
Descriptor: 2'-O-methyltransferase, 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, ADENINE, ...
Authors:Minasov, G, Shuvalova, L, Rosas-Lemus, M, Kiryukhina, O, Brunzelle, J.S, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-05-06
Release date:2020-05-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-resolution structures of the SARS-CoV-2 2'- O -methyltransferase reveal strategies for structure-based inhibitor design.
Sci.Signal., 13, 2020
2YZ2
DownloadVisualize
BU of 2yz2 by Molmil
Crystal structure of the ABC transporter in the cobalt transport system
Descriptor: Putative ABC transporter ATP-binding protein TM_0222
Authors:Ethayathullah, A.S, Bessho, Y, Padmanabhan, B, Singh, T.P, Kaur, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-02
Release date:2007-11-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the ABC transporter in the cobalt transport system
To be Published
6WWD
DownloadVisualize
BU of 6wwd by Molmil
Crystal structure of Nucleoside-triphosphatase / dITP/XTP pyrophosphatase from Mycobacterium abscessus ATCC 19977 / DSM 44196
Descriptor: dITP/XTP pyrophosphatase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-05-09
Release date:2020-05-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of Nucleoside-triphosphatase / dITP/XTP pyrophosphatase from Mycobacterium abscessus ATCC 19977 / DSM 44196
to be published
8SIV
DownloadVisualize
BU of 8siv by Molmil
Structure of Compound 2 bound to the CHK1 10-point mutant
Descriptor: N-(7-chloro-6-{1-[(3R,4R)-4-hydroxy-3-methyloxolan-3-yl]piperidin-4-yl}isoquinolin-3-yl)cyclopropanecarboxamide, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2023-04-17
Release date:2023-11-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.759 Å)
Cite:Discovery of MK-1468: A Potent, Kinome-Selective, Brain-Penetrant Amidoisoquinoline LRRK2 Inhibitor for the Potential Treatment of Parkinson's Disease.
J.Med.Chem., 66, 2023
2YZQ
DownloadVisualize
BU of 2yzq by Molmil
Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
Descriptor: Putative uncharacterized protein PH1780, S-ADENOSYLMETHIONINE
Authors:Kanagawa, M, Minami, Y, Watanabe, N, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-06
Release date:2007-11-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Crystal structure of uncharacterized conserved protein from Pyrococcus horikoshii
To be Published
6D9I
DownloadVisualize
BU of 6d9i by Molmil
Pekin duck egg lysozyme isoform II (DEL-II)
Descriptor: CHLORIDE ION, Lysozyme, MAGNESIUM ION
Authors:Langley, D.B, Christ, D.
Deposit date:2018-04-30
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal structure of duck egg lysozyme isoform II (DEL-II).
BMC Struct. Biol., 18, 2018
2Z0J
DownloadVisualize
BU of 2z0j by Molmil
Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Putative uncharacterized protein TTHA1438
Authors:Nakagawa, N, Kukimoto-Niino, M, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
To be Published
6DP1
DownloadVisualize
BU of 6dp1 by Molmil
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 75 mM K+ for 40 s at 21 C
Descriptor: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of uncleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', ...
Authors:Samara, N.L, Yang, W.
Deposit date:2018-06-09
Release date:2018-08-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol., 25, 2018
6DPF
DownloadVisualize
BU of 6dpf by Molmil
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 40 mM Mn2+ and 200 mM K+ for 40 s at 21 C
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ...
Authors:Samara, N.L, Yang, W.
Deposit date:2018-06-09
Release date:2018-08-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol., 25, 2018
4U2T
DownloadVisualize
BU of 4u2t by Molmil
Cholesterol oxidase in the oxidised state complexed with isopropanol
Descriptor: Cholesterol oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Golden, E.A, Vrielink, A.
Deposit date:2014-07-18
Release date:2014-12-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.223 Å)
Cite:High-resolution structures of cholesterol oxidase in the reduced state provide insights into redox stabilization.
Acta Crystallogr.,Sect.D, 70, 2014
2YQP
DownloadVisualize
BU of 2yqp by Molmil
Solution structure of the zf-HIT domain in DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
Descriptor: Probable ATP-dependent RNA helicase DDX59, ZINC ION
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the zf-HIT domain in DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
To be Published
8SIX
DownloadVisualize
BU of 8six by Molmil
Structure of Compound 13 bound to the CHK1 10-point mutant
Descriptor: (1S)-N-(7-chloro-6-{4-[(3R,4R)-4-hydroxy-3-methyloxolan-3-yl]piperazin-1-yl}isoquinolin-3-yl)-6-oxaspiro[2.5]octane-1-carboxamide, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2023-04-17
Release date:2023-11-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of MK-1468: A Potent, Kinome-Selective, Brain-Penetrant Amidoisoquinoline LRRK2 Inhibitor for the Potential Treatment of Parkinson's Disease.
J.Med.Chem., 66, 2023
2YR6
DownloadVisualize
BU of 2yr6 by Molmil
Crystal structure of L-phenylalanine oxidase from Psuedomonas sp.P501
Descriptor: 2-AMINOBENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Ida, K, Kurabayashi, M, Suguro, M, Suzuki, H.
Deposit date:2007-04-02
Release date:2008-04-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis of proteolytic activation of L-phenylalanine oxidase from Pseudomonas sp. P-501.
J.Biol.Chem., 283, 2008
2YS4
DownloadVisualize
BU of 2ys4 by Molmil
Solution structure of the N-terminal PapD-like domain of HYDIN protein from human
Descriptor: Hydrocephalus-inducing protein homolog
Authors:Li, H, Tomizawa, T, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal PapD-like domain of HYDIN protein from human
To be Published
2Y9J
DownloadVisualize
BU of 2y9j by Molmil
THREE-DIMENSIONAL MODEL OF SALMONELLA'S NEEDLE COMPLEX AT SUBNANOMETER RESOLUTION
Descriptor: LIPOPROTEIN PRGK, PROTEIN PRGH
Authors:Schraidt, O, Marlovits, T.C.
Deposit date:2011-02-15
Release date:2011-03-23
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Three-Dimensional Model of Salmonella'S Needle Complex at Subnanometer Resolution.
Science, 331, 2011
2YT1
DownloadVisualize
BU of 2yt1 by Molmil
Solution structure of the chimera of the C-terminal tail peptide of APP and the C-terminal PID domain of Fe65L
Descriptor: Amyloid beta A4 protein and Amyloid beta A4 precursor protein-binding family B member 2
Authors:Li, H, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode
J.Biol.Chem., 283, 2008
8SIW
DownloadVisualize
BU of 8siw by Molmil
Structure of Compound 5 bound to the CHK1 10-point mutant
Descriptor: (1S,2S)-N-(7-chloro-6-{1-[(3R,4R)-4-hydroxy-3-methyloxolan-3-yl]piperidin-4-yl}isoquinolin-3-yl)-2-(1-methyl-1H-pyrazol-4-yl)cyclopropane-1-carboxamide, Serine/threonine-protein kinase Chk1
Authors:Palte, R.L.
Deposit date:2023-04-17
Release date:2023-11-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.877 Å)
Cite:Discovery of MK-1468: A Potent, Kinome-Selective, Brain-Penetrant Amidoisoquinoline LRRK2 Inhibitor for the Potential Treatment of Parkinson's Disease.
J.Med.Chem., 66, 2023

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon