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8XF2
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BU of 8xf2 by Molmil
Crystal structure of the reassembled C-phycocyanin hexamer from Thermoleptolyngbya sp. O-77
Descriptor: C-phycocyanin alpha chain, C-phycocyanin beta chain, PHOSPHATE ION, ...
Authors:Nguyen, H.K, Teramoto, T, Kakuta, Y, Yoon, K.S.
Deposit date:2023-12-13
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin.
J.Biosci.Bioeng., 137, 2024
8XF1
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BU of 8xf1 by Molmil
Crystal structure of the dissociated C-phycocyanin beta-chain from Thermoleptolyngbya sp. O-77
Descriptor: C-phycocyanin beta chain, PHYCOCYANOBILIN
Authors:Nguyen, H.K, Teramoto, T, Kakuta, Y, Yoon, K.S.
Deposit date:2023-12-13
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin.
J.Biosci.Bioeng., 137, 2024
8XF0
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BU of 8xf0 by Molmil
Crystal structure of the dissociated C-phycocyanin alpha-chain from Thermoleptolyngbya sp. O-77
Descriptor: C-phycocyanin alpha chain, MAGNESIUM ION, PHYCOCYANOBILIN
Authors:Nguyen, H.K, Teramoto, T, Kakuta, Y, Yoon, K.S.
Deposit date:2023-12-13
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin.
J.Biosci.Bioeng., 137, 2024
8XEU
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BU of 8xeu by Molmil
Structure of the siderophore periplasmic binding protein FtsB from Streptococcus pyogenes with ferrichrome bound
Descriptor: FERRICHROME, Iron-hydroxamate ABC transporter substrate-binding protein FtsB
Authors:Caaveiro, J.M.M, Fernandez-Perez, J, Tsumoto, K.
Deposit date:2023-12-13
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conserved binding mechanism for ligand promiscuity in the hydroxamate siderophore binding protein FtsB from Streptococcus pyogenes
Structure
8XET
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BU of 8xet by Molmil
High-resolution structure of the siderophore periplasmic binding protein FtsB from Streptococcus pyogenes
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, ...
Authors:Caaveiro, J.M.M, Fernandez-Perez, J, Tsumoto, K.
Deposit date:2023-12-13
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Conserved binding mechanism for ligand promiscuity in the hydroxamate siderophore binding protein FtsB from Streptococcus pyogenes
Structure
8XEQ
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BU of 8xeq by Molmil
Solution NMR structure of DNA sequence d(CGATCG)2
Descriptor: DNA (5'-D(*CP*AP*CP*GP*TP*GP*)-3')
Authors:Nair, M.S, Kumar, S.
Deposit date:2023-12-12
Release date:2024-01-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of DNA sequence d(CGATCG)2
To Be Published
8XEJ
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BU of 8xej by Molmil
Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc
Descriptor: 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Fab heavy chain, Fab light chain, ...
Authors:Sakuragi, T.S, Kanai, R.K, Kikkawa, M.K, Toyoshima, C.T, Nagata, S.N.
Deposit date:2023-12-12
Release date:2024-02-28
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.66 Å)
Cite:The role of the C-terminal tail region as a plug to regulate XKR8 lipid scramblase.
J.Biol.Chem., 300, 2024
8XE9
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BU of 8xe9 by Molmil
XBB.1.5 RBD in complex with BD55-1205
Descriptor: BD55-1205 heavy chain, BD55-1205 light chain, Spike protein S2'
Authors:Feng, L.L.
Deposit date:2023-12-11
Release date:2024-03-06
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:XBB.1.5 RBD in complex with BD55-1205
To Be Published
8XE7
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BU of 8xe7 by Molmil
Crystal structure of human Sirt2 without Sirt2-specific insertion
Descriptor: NAD-dependent protein deacetylase sirtuin-2, ZINC ION
Authors:Konuma, T, Akashi, S.
Deposit date:2023-12-11
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Biophysical insights into the dimer formation of human Sirtuin 2.
Protein Sci., 33, 2024
8XE5
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BU of 8xe5 by Molmil
norbelladine 4'-O-methyltransferase complexed with Mg, SAH, and 3,4-dihydroxybenzaldehyde
Descriptor: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XE4
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BU of 8xe4 by Molmil
norbelladine 4'-O-methyltransferase complexed with Mg, SAH, and norbelladine
Descriptor: GLYCEROL, MAGNESIUM ION, Norbelladine, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XE3
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BU of 8xe3 by Molmil
norbelladine 4'-O-methyltransferase complexed with Mg and SAH
Descriptor: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XE2
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BU of 8xe2 by Molmil
O-methyltransferase from Lycoris longituba D230A variant complexed with Mg, SAH, and 3,4-dihydroxybenzaldehyde
Descriptor: GLYCEROL, MAGNESIUM ION, Protocatechuic aldehyde, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XE0
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BU of 8xe0 by Molmil
O-methyltransferase from Lycoris longituba M52W variant complexed with Mg, SAH, and 3,4-dihydroxybenzaldehyde
Descriptor: MAGNESIUM ION, Protocatechuic aldehyde, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDY
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BU of 8xdy by Molmil
O-methyltransferase from Lycoris longituba M52A variant complexed with Mg, SAH, and 3,4-dihydroxybenzaldehyde
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDV
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BU of 8xdv by Molmil
O-methyltransferase from Lycoris longituba M52S-F186Y variant complexed with Mg and SAH
Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, norbelladine O-methyltransferase
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDU
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BU of 8xdu by Molmil
O-methyltransferase from Lycoris longituba M52S variant complexed with Mg and SAH
Descriptor: GLYCEROL, MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDT
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BU of 8xdt by Molmil
O-methyltransferase from Lycoris longituba M52T variant complexed with Mg and SAH
Descriptor: MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, norbelladine O-methyltransferase
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDS
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BU of 8xds by Molmil
O-methyltransferase from Lycoris longituba F186Y variant complexed with Mg and SAH
Descriptor: GLYCEROL, MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDR
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BU of 8xdr by Molmil
O-methyltransferase from Lycoris aurea complexed with Mg, SAH, and 3,4-dihydroxybenzaldehyde
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDQ
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BU of 8xdq by Molmil
O-methyltransferase from Lycoris aurea complexed with Mg and SAH
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDP
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BU of 8xdp by Molmil
O-methyltransferase from Lycoris longituba complexed with Mg, SAH, and 3,4-dihydroxybenzaldehyde
Descriptor: GLYCEROL, MAGNESIUM ION, Protocatechuic aldehyde, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XDO
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BU of 8xdo by Molmil
O-methyltransferase from Lycoris longituba complexed with Mg and SAH
Descriptor: GLYCEROL, MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Saw, Y.Y.H, Nakashima, Y, Morita, H.
Deposit date:2023-12-11
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases
Acs Catalysis, 2024
8XD6
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BU of 8xd6 by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the steady stage of reaction
Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ...
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024
8XD5
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BU of 8xd5 by Molmil
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the steady stage of reaction
Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Wakabayashi, T, Oide, M, Nakasako, M.
Deposit date:2023-12-10
Release date:2023-12-27
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase.
Sci Rep, 14, 2024

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PDB entries from 2024-10-09

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