PDB: 82129 resultsInfo pagesStatus searchChemie searchBIRD

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8XE7	Crystal structure of human Sirt2 without Sirt2-specific insertion Descriptor: NAD-dependent protein deacetylase sirtuin-2, ZINC ION Authors: Konuma, T, Akashi, S. Deposit date: 2023-12-11 Release date: 2024-05-22 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Biophysical insights into the dimer formation of human Sirtuin 2. Protein Sci., 33, 2024
8XD6	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD5	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD4	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD3	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD2	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD1	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XD0	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCZ	Cryo-EM structure of glutamate dehydrogenase from thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCY	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCX	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCW	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCV	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCU	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG and GLU in the steady stage of reaction Descriptor: 2-OXOGLUTARIC ACID, GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCT	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCS	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the initial stage of reaction Descriptor: 2-OXOGLUTARIC ACID, AMMONIUM ION, Glutamate dehydrogenase, ... Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCR	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCQ	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCP	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction Descriptor: GAMMA-L-GLUTAMIC ACID, Glutamate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCO	Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the initial stage of reaction Descriptor: Glutamate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Wakabayashi, T, Oide, M, Nakasako, M. Deposit date: 2023-12-10 Release date: 2023-12-27 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: CryoEM-sampling of metastable conformations appearing in cofactor-ligand association and catalysis of glutamate dehydrogenase. Sci Rep, 14, 2024
8XCN	Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1190A Descriptor: FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ... Authors: Fukawa, E, Miyata, T, Makino, F, Adachi, T, Suzuki, Y, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O. Deposit date: 2023-12-09 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Structural and electrochemical elucidation of biocatalytic mechanisms in direct electron transfer-type D-fructose dehydrogenase. Electrochim Acta, 490, 2024
8XCM	Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-N1146Q Descriptor: FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Fructose dehydrogenase cytochrome subunit, ... Authors: Fukawa, E, Miyata, T, Makino, F, Adachi, T, Suzuki, Y, Tanaka, H, Namba, K, Sowa, K, Kitazumi, Y, Shirai, O. Deposit date: 2023-12-09 Release date: 2024-05-22 Method: ELECTRON MICROSCOPY (3.08 Å) Cite: Structural and electrochemical elucidation of biocatalytic mechanisms in direct electron transfer-type D-fructose dehydrogenase. Electrochim Acta, 490, 2024
8XCK	Closed state of central tail fiber of bacteriophage lambda Descriptor: Peptidyl-prolyl cis-trans isomerase A, Tip attachment protein J Authors: Ge, X.F, Wang, J.W. Deposit date: 2023-12-09 Release date: 2024-05-01 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Structural mechanism of bacteriophage lambda tail's interaction with the bacterial receptor. Nat Commun, 15, 2024
8XCJ	Open State of central tail fiber of bacteriophage lambda upon binding to LamB (gpJ713-LamB complex) Descriptor: Maltoporin, Tip attachment protein J Authors: Ge, X.F, Wang, J.W. Deposit date: 2023-12-09 Release date: 2024-05-01 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Structural mechanism of bacteriophage lambda tail's interaction with the bacterial receptor. Nat Commun, 15, 2024
8XCI	Open state of central tail fiber of bacteriophage lambda upon binding to LamB Descriptor: Tip attachment protein J Authors: Ge, X.F, Wang, J.W. Deposit date: 2023-12-09 Release date: 2024-05-01 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.57 Å) Cite: Structural mechanism of bacteriophage lambda tail's interaction with the bacterial receptor. Nat Commun, 15, 2024

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