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2DT7
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Solution structure of the second SURP domain of human splicing factor SF3a120 in complex with a fragment of human splicing factor SF3a60
Descriptor: Splicing factor 3 subunit 1, Splicing factor 3A subunit 3
Authors:He, F, Kuwasako, K, Inoue, M, Guntert, P, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-11
Release date:2006-12-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP
Structure, 14, 2006
2DT8
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Fatty Acid Binding of a DegV family Protein from Thermus thermophilus
Descriptor: DegV family protein, GLYCEROL, PALMITIC ACID, ...
Authors:Rehse, P.H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-11
Release date:2007-06-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Fatty Acid Binding of a DegV family Protein from Thermus thermophilus
To be Published
2DT9
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BU of 2dt9 by Molmil
Crystal structure of the regulatory subunit of aspartate kinase from Thermus flavus
Descriptor: ACETATE ION, Aspartokinase, THREONINE
Authors:Yoshida, A, Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2006-07-11
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of the regulatory subunit of Thr-sensitive aspartate kinase from Thermus thermophilus
Febs J., 276, 2009
2DTB
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BU of 2dtb by Molmil
DELTA-TOXIN AND ANALOGUES AS PEPTIDE MODELS FOR PROTEIN ION CHANNELS
Descriptor: DELTA-TOXIN
Authors:Bladon, C.M, Bladon, P, Parkinson, J.A.
Deposit date:1992-09-09
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Delta-toxin and analogues as peptide models for protein ion channels.
Biochem.Soc.Trans., 20, 1992
2DTC
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BU of 2dtc by Molmil
Crystal structure of MS0666
Descriptor: RAL GUANINE NUCLEOTIDE EXCHANGE FACTOR RALGPS1A
Authors:Wang, H, Kishishita, S, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-12
Release date:2007-01-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of MS0666
To be Published
2DTD
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Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in ligand-free form
Descriptor: Glucose 1-dehydrogenase related protein, SULFATE ION
Authors:Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
Deposit date:2006-07-12
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTE
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BU of 2dte by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Glucose 1-dehydrogenase related protein
Authors:Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
Deposit date:2006-07-12
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTH
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BU of 2dth by Molmil
The Crystal Structure of the Orthorhombic Form of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotin and ADP
Descriptor: 235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase, ADENOSINE-5'-DIPHOSPHATE, BIOTIN
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-12
Release date:2007-01-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3
To be Published
2DTI
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BU of 2dti by Molmil
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Pyrophosphate and Mn(2+)
Descriptor: 235aa long hypothetical biotin-[acetyl-CoA-carboxylase] ligase, BIOTINYL-5-AMP, MANGANESE (II) ION, ...
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-12
Release date:2007-01-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3
To be Published
2DTJ
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BU of 2dtj by Molmil
Crystal structure of regulatory subunit of aspartate kinase from Corynebacterium glutamicum
Descriptor: Aspartokinase, CITRIC ACID, THREONINE
Authors:Yoshida, A, Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2006-07-12
Release date:2007-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural Insight into Concerted Inhibition of alpha(2)beta(2)-Type Aspartate Kinase from Corynebacterium glutamicum
J.Mol.Biol., 368, 2007
2DTM
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BU of 2dtm by Molmil
Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies
Descriptor: IMMUNOGLOBULIN 6D9
Authors:Oda, M, Ito, N, Tsumuraya, T, Suzuki, K, Fujii, I.
Deposit date:2006-07-13
Release date:2007-05-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis
J.Mol.Biol., 369, 2007
2DTN
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BU of 2dtn by Molmil
Crystal structure of Helicobacter pylori undecaprenyl pyrophosphate synthase complexed with pyrophosphate
Descriptor: DIPHOSPHATE, undecaprenyl pyrophosphate synthase
Authors:Guo, R.T, Kuo, C.J, Chen, C.L, Ko, T.P, Liang, P.H, Wang, A.H.-J.
Deposit date:2006-07-13
Release date:2007-06-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Biochemical characterization, crystal structure, and inhibitors of Helicobacter pylori undecaprenyl pyrophosphate synthase
To be Published
2DTO
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BU of 2dto by Molmil
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 Complexed with ATP and Biotin
Descriptor: 235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase, ADENOSINE-5'-TRIPHOSPHATE, BIOTIN
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-13
Release date:2007-01-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3
To be Published
2DTR
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BU of 2dtr by Molmil
STRUCTURE OF DIPHTHERIA TOXIN REPRESSOR
Descriptor: COBALT (II) ION, DIPHTHERIA TOXIN REPRESSOR, SULFATE ION
Authors:Qiu, X, Pohl, E, Hol, W.G.
Deposit date:1996-07-26
Release date:1997-08-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution structure of the diphtheria toxin repressor complexed with cobalt and manganese reveals an SH3-like third domain and suggests a possible role of phosphate as co-corepressor.
Biochemistry, 35, 1996
2DTS
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BU of 2dts by Molmil
Crystal Structure of the Defucosylated Fc Fragment from Human Immunoglobulin G1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region
Authors:Matsumiya, S, Yamaguchi, Y, Saito, J, Nagano, M, Sasakawa, H, Otaki, S, Satoh, M, Shitara, K, Kato, K.
Deposit date:2006-07-14
Release date:2007-03-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural comparison of fucosylated and nonfucosylated fc fragments of human immunoglobulin g1
J.Mol.Biol., 368, 2007
2DTT
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BU of 2dtt by Molmil
Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from Pyrococcus horikoshii OT3 complexed with (1'R,2'S)-biopterin
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, Hypothetical protein PH0634
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-15
Release date:2007-01-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from Pyrococcus horikoshii OT3
To be Published
2DTU
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BU of 2dtu by Molmil
Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog
Descriptor: 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3', DNA polymerase
Authors:Aller, P, Hogg, M, Konigsberg, W, Wallace, S.S, Doublie, S.
Deposit date:2006-07-15
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structural and biochemical investigation of the role in proofreading of a beta hairpin loop found in the exonuclease domain of a replicative DNA polymerase of the B family.
J.Biol.Chem., 282, 2007
2DTW
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BU of 2dtw by Molmil
Crystal Structure of basic winged bean lectin in complex with 2Me-O-D-Galactose
Descriptor: 2-O-methyl-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kulkarni, K.A, Katiyar, S, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2006-07-18
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the carbohydrate-specificity of basic winged-bean lectin and its differential affinity for Gal and GalNAc
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2DTX
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BU of 2dtx by Molmil
Structure of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) in complex with D-mannose
Descriptor: Glucose 1-dehydrogenase related protein, SULFATE ION, beta-D-mannopyranose
Authors:Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T.
Deposit date:2006-07-18
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Insights into Unique Substrate Selectivity of Thermoplasma acidophilumd-Aldohexose Dehydrogenase
J.Mol.Biol., 367, 2007
2DTY
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BU of 2dty by Molmil
Crystal structure of basic winged bean lectin complexed with N-acetyl-D-galactosamine
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Basic agglutinin, CALCIUM ION, ...
Authors:Kulkarni, K.A, Katiyar, S, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2006-07-19
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis for the carbohydrate-specificity of basic winged-bean lectin and its differential affinity for Gal and GalNAc
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2DTZ
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Crystal Structure of multidrug binding protein QacR from Staphylococcus aureus cocrystallized with compound DB75
Descriptor: HTH-type transcriptional regulator qacR, SULFATE ION
Authors:Brooks, B.E, Brennan, R.G.
Deposit date:2006-07-19
Release date:2007-07-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Multidrug-Binding Transcription Factor QacR Binds the Bivalent Aromatic Diamidines DB75 and DB359 in Multiple Positions
J.Am.Chem.Soc., 129, 2007
2DU0
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BU of 2du0 by Molmil
Crystal structure of basic winged bean lectin in complex with Alpha-D-galactose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Basic agglutinin, CALCIUM ION, ...
Authors:Kulkarni, K.A, Katiyar, S, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2006-07-19
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the carbohydrate-specificity of basic winged-bean lectin and its differential affinity for Gal and GalNAc
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2DU1
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BU of 2du1 by Molmil
Crystal Structure of basic winged bean lectin in complex with Methyl-alpha-N-acetyl-D galactosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Basic agglutinin, ...
Authors:Kulkarni, K.A, Katiyar, S, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2006-07-19
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the carbohydrate-specificity of basic winged-bean lectin and its differential affinity for Gal and GalNAc
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2DU2
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Crystal Structure Analysis of the L-Lactate Oxidase
Descriptor: FLAVIN MONONUCLEOTIDE, Lactate oxidase
Authors:Morimoto, Y.
Deposit date:2006-07-19
Release date:2006-12-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of L-lactate oxidase from Aerococcus viridans at 2.1A resolution reveals the mechanism of strict substrate recognition
Biochem.Biophys.Res.Commun., 350, 2006
2DU3
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine
Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
Authors:Fukunaga, R.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007

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