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PDB: 765 results

1PQJ
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T4 LYSOZYME CORE REPACKING MUTANT A111V/CORE10/TA
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, Lysozyme, ...
Authors:Mooers, B.H, Datta, D, Baase, W.A, Zollars, E.S, Mayo, S.L, Matthews, B.W.
Deposit date:2003-06-18
Release date:2003-10-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:REPACKING THE CORE OF T4 LYSOZYME BY AUTOMATED DESIGN
J.Mol.Biol., 332, 2003
248L
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BU of 248l by Molmil
THE RESPONSE OF T4 LYSOZYME TO LARGE-TO-SMALL SUBSTITUTIONS WITHIN THE CORE AND ITS RELATION TO THE HYDROPHOBIC EFFECT
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, T4 LYSOZYME
Authors:Xu, J, Baase, W.A, Baldwin, E, Matthews, B.W.
Deposit date:1997-10-22
Release date:1998-03-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect.
Protein Sci., 7, 1998
1QTB
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BU of 1qtb by Molmil
THE INTRODUCTION OF STRAIN AND ITS EFFECTS ON THE STRUCTURE AND STABILITY OF T4 LYSOZYME
Descriptor: 2-HYDROXYETHYL DISULFIDE, LYSOZYME
Authors:Liu, R, Baase, W.A, Matthews, B.W.
Deposit date:1999-06-26
Release date:1999-07-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The introduction of strain and its effects on the structure and stability of T4 lysozyme.
J.Mol.Biol., 295, 2000
1QSQ
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BU of 1qsq by Molmil
CAVITY CREATING MUTATION
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Gassner, N.C, Baase, W.A, Lindstrom, J, Matthews, B.W.
Deposit date:1999-06-22
Release date:1999-06-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is a rate-limiting step in folding.
Biochemistry, 38, 1999
1DYA
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BU of 1dya by Molmil
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Zhang, X, Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1QUG
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E108V MUTANT OF T4 LYSOZYME
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Wray, J, Baase, W.A, Lindstrom, J.D, Poteete, A.R, Matthews, B.W.
Deposit date:1999-07-01
Release date:1999-07-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of a non-contiguous second-site revertant in T4 lysozyme shows that increasing the rigidity of a protein can enhance its stability.
J.Mol.Biol., 292, 1999
234L
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BU of 234l by Molmil
T4 LYSOZYME MUTANT M106L
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Lipscomb, L.A, Drew, D.L, Gassner, N, Baase, W.A, Matthews, B.W.
Deposit date:1997-10-07
Release date:1998-01-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Context-dependent protein stabilization by methionine-to-leucine substitution shown in T4 lysozyme.
Protein Sci., 7, 1998
257L
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BU of 257l by Molmil
AN ADAPTABLE METAL-BINDING SITE ENGINEERED INTO T4 LYSOZYME
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, PROTEIN (LYSOZYME)
Authors:Wray, J.W, Baase, W.A, Ostheimer, G.J, Matthews, B.W.
Deposit date:1999-01-05
Release date:2000-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Use of a non-rigid region in T4 lysozyme to design an adaptable metal-binding site.
Protein Eng., 13, 2000
1CV4
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BU of 1cv4 by Molmil
T4 LYSOZYME MUTANT L118M
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Gassner, N.C, Baase, W.A, Lindstrom, J, Lu, J, Matthews, B.W.
Deposit date:1999-08-22
Release date:1999-11-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Methionine and alanine substitutions show that the formation of wild-type-like structure in the carboxy-terminal domain of T4 lysozyme is a rate-limiting step in folding.
Biochemistry, 38, 1999
1DYF
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BU of 1dyf by Molmil
DETERMINATION OF ALPHA-HELIX PROPENSITY WITHIN THE CONTEXT OF A FOLDED PROTEIN: SITES 44 AND 131 IN BACTERIOPHAGE T4 LYSOZYME
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, T4 LYSOZYME
Authors:Zhou, H.-J, Matthews, B.W.
Deposit date:1993-05-13
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
J.Mol.Biol., 235, 1994
1JTM
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BU of 1jtm by Molmil
Alternative Structures of a Sequence Extended T4 Lysozyme Show that the Highly Conserved Beta-Sheet has Weak Intrinsic Folding Propensity
Descriptor: BETA-MERCAPTOETHANOL, LYSOZYME
Authors:Sagermann, M, Matthews, B.W.
Deposit date:2001-08-21
Release date:2002-03-20
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of a T4-lysozyme Duplication-extension Mutant Demonstrate that the Highly Conserved beta-Sheet Region has Low Intrinsic Folding Propensity
J.Mol.Biol., 316, 2002
1D9W
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BU of 1d9w by Molmil
BACTERIOPHAGE T4 LYSOZYME MUTANT
Descriptor: BETA-MERCAPTOETHANOL, PROTEIN (LYSOZYME)
Authors:Korndoerfer, I.P, Matthews, B.W.
Deposit date:1999-10-30
Release date:1999-11-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Helix Capping in Bacteriophage T4 Lysozyme
To be Published
259L
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BU of 259l by Molmil
AN ADAPTABLE METAL-BINDING SITE ENGINEERED INTO T4 LYSOZYME
Descriptor: CHLORIDE ION, COBALT (II) ION, PROTEIN (LYSOZYME)
Authors:Wray, J.W, Baase, W.A, Ostheimer, G.J, Matthews, B.W.
Deposit date:1999-02-10
Release date:1999-04-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Use of a non-rigid region in T4 lysozyme to design an adaptable metal-binding site.
Protein Eng., 13, 2000
1CX7
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BU of 1cx7 by Molmil
T4 LYSOZYME METHIONINE CORE MUTANT
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Gassner, N.C, Baase, W.A, Lindstrom, J, Lu, J, Matthews, B.W.
Deposit date:1999-08-28
Release date:1999-11-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Use of differentially substituted selenomethionine proteins in X-ray structure determination.
Acta Crystallogr.,Sect.D, 55, 1999
2OU0
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BU of 2ou0 by Molmil
1-methylpyrrole in complex with T4 Lysozyme L99A
Descriptor: 1-METHYL-1H-PYRROLE, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Shoichet, B.K.
Deposit date:2007-02-09
Release date:2007-08-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Predicting absolute ligand binding free energies to a simple model site.
J.Mol.Biol., 371, 2007
1OVH
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BU of 1ovh by Molmil
T4 Lysozyme Cavity Mutant L99A/M102Q Bound With 2-Chloro-6-Methyl-Aniline
Descriptor: 2-CHLORO-6-METHYL-ANILINE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Wei, B.Q, Baase, W.A, Weaver, L.H, Matthews, B.W, Shoichet, B.K.
Deposit date:2003-03-26
Release date:2004-04-06
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Testing a Flexible-receptor Docking Algorithm in a Model Binding Site
J.Mol.Biol., 337, 2004
191L
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BU of 191l by Molmil
A HELIX INITIATION SIGNAL IN T4 LYSOZYME IDENTIFIED BY POLYALANINE MUTAGENESIS
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Zhang, X.-J, Matthews, B.W.
Deposit date:1995-06-13
Release date:1995-09-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A helix initiation signal in T4 lysozyme identified by polyalanine mutagenesis.
Biophys.Chem., 101-102, 2002
1L99
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BU of 1l99 by Molmil
PERTURBATION OF TRP 138 IN T4 LYSOZYME BY MUTATIONS AT GLN 105 USED TO CORRELATE CHANGES IN STRUCTURE, STABILITY, SOLVATION, AND SPECTROSCOPIC PROPERTIES
Descriptor: BETA-MERCAPTOETHANOL, T4 LYSOZYME
Authors:Pjura, P, Mcintosh, L.P, Wozniak, J.A, Matthews, B.W.
Deposit date:1992-07-13
Release date:1993-10-31
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Perturbation of Trp 138 in T4 lysozyme by mutations at Gln 105 used to correlate changes in structure, stability, solvation, and spectroscopic properties.
Proteins, 15, 1993
200L
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BU of 200l by Molmil
THERMODYNAMIC AND STRUCTURAL COMPENSATION IN "SIZE-SWITCH" CORE-REPACKING VARIANTS OF T4 LYSOZYME
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, LYSOZYME
Authors:Baldwin, E, Xu, J, Hajiseyedjavadi, O, Matthews, B.W.
Deposit date:1995-11-06
Release date:1996-03-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Thermodynamic and structural compensation in "size-switch" core repacking variants of bacteriophage T4 lysozyme.
J.Mol.Biol., 259, 1996
3C7Y
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BU of 3c7y by Molmil
Mutant R96A OF T4 lysozyme in wildtype background at 298K
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, lysozyme
Authors:Mooers, B.H.M.
Deposit date:2008-02-08
Release date:2009-02-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Contributions of all 20 amino acids at site 96 to the stability and structure of T4 lysozyme.
Protein Sci., 18, 2009
6U0B
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BU of 6u0b by Molmil
Neutron crystal structure of wtT4LD
Descriptor: CHLORIDE ION, Endolysin
Authors:Cuneo, M.J, Myles, D.A, Li, L.
Deposit date:2019-08-14
Release date:2020-08-19
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.951 Å), X-RAY DIFFRACTION
Cite:Solvent entry into cavities of T4 lysozyme.
To be published
6IIH
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BU of 6iih by Molmil
crystal structure of mitochondrial calcium uptake 2(MICU2)
Descriptor: CALCIUM ION, Endolysin,Calcium uptake protein 2, mitochondrial
Authors:Shen, Q, Wu, W, Zheng, J, Jia, Z.
Deposit date:2018-10-06
Release date:2019-08-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.958 Å)
Cite:The crystal structure of MICU2 provides insight into Ca2+binding and MICU1-MICU2 heterodimer formation.
Embo Rep., 20, 2019
215L
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BU of 215l by Molmil
PROTEIN STRUCTURE PLASTICITY EXEMPLIFIED BY INSERTION AND DELETION MUTANTS IN T4 LYSOZYME
Descriptor: 2-HYDROXYETHYL DISULFIDE, T4 LYSOZYME
Authors:Vetter, I.R, Baase, W.A, Heinz, D.W, Xiong, J.-P, Snow, S, Matthews, B.W.
Deposit date:1996-09-23
Release date:1996-12-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme.
Protein Sci., 5, 1996
1KY0
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BU of 1ky0 by Molmil
METHIONINE CORE MUTANT OF T4 LYSOZYME
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Gassner, N.C, Baase, W.A, Mooers, B.H, Busam, R.D, Weaver, L.H, Lindstrom, J.D, Quillin, M.L, Matthews, B.W.
Deposit date:2002-02-01
Release date:2003-06-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Multiple methionine substitutions are tolerated in T4 lysozyme and have coupled effects on folding and stability
BIOPHYS.CHEM., 100, 2003
1D3J
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BU of 1d3j by Molmil
N-TERMINAL DOMAIN CORE METHIONINE MUTATION
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, LYSOZYME
Authors:Gassner, N.C, Matthews, B.W.
Deposit date:1999-09-29
Release date:1999-10-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Use of differentially substituted selenomethionine proteins in X-ray structure determination.
Acta Crystallogr.,Sect.D, 55, 1999

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