2QTK
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6K35
| Crystal structure of GH20 exo beta-N-acetylglucosaminidase from Vibrio harveyi in complex with NAG-thiazoline | Descriptor: | 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, Beta-N-acetylglucosaminidase Nag2 | Authors: | Meekrathok, P, Stubbs, K.A, Bulmer, D.M, van den Berg, B, Suginta, W. | Deposit date: | 2019-05-16 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.36 Å) | Cite: | NAG-thiazoline is a potent inhibitor of the Vibrio campbellii GH20 beta-N-Acetylglucosaminidase. Febs J., 287, 2020
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7VU2
| Chitoporin from Serratia marcescens | Descriptor: | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... | Authors: | Amornloetwattana, R, Robinson, R.C, van den Berg, B, Suginta, W. | Deposit date: | 2021-11-01 | Release date: | 2022-11-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Chitoporin from Serratia marcescens To Be Published
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7VU3
| Chitoporin from Serratia marcescens in-complex with chitohexaose | Descriptor: | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | Authors: | Amornloetwattana, R, Robinson, R.C, van den Berg, B, Suginta, W. | Deposit date: | 2021-11-01 | Release date: | 2022-11-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Chitoporin from Serratia marcescens in-complex with chitohexaose To Be Published
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7VU0
| Chitoporin from Escherichia coli | Descriptor: | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Chitoporin, DECYL-BETA-D-MALTOPYRANOSIDE, ... | Authors: | Suginta, W, Soysa, H.S.M, Amornloetwattana, R, van den Berg, B. | Deposit date: | 2021-11-01 | Release date: | 2022-11-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Chitoporin from Escherichia coli To Be Published
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4RL9
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4RLC
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8BLW
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8A8C
| T5 phage receptor-binding protein pb5 bound to ferrichrome transporter FhuA | Descriptor: | Ferrichrome outer membrane transporter/phage receptor, Receptor-binding protein pb5, [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate | Authors: | Silale, A, van den Berg, B. | Deposit date: | 2022-06-22 | Release date: | 2022-10-05 | Last modified: | 2022-11-16 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Structural basis for host recognition and superinfection exclusion by bacteriophage T5. Proc.Natl.Acad.Sci.USA, 119, 2022
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8AA1
| Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12 | Descriptor: | MAGNESIUM ION, SusC homolog, SusD homolog, ... | Authors: | White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B. | Deposit date: | 2022-06-29 | Release date: | 2023-06-07 | Last modified: | 2023-06-21 | Method: | ELECTRON MICROSCOPY (2.9 Å) | Cite: | Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes. Nature, 618, 2023
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8AA0
| Levan utilisation machinery (utilisome) with levan fructo-oligosaccharides DP 8-12 | Descriptor: | DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ... | Authors: | White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B. | Deposit date: | 2022-06-29 | Release date: | 2023-06-07 | Last modified: | 2023-06-21 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes. Nature, 618, 2023
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8A9Y
| Substrate-free levan utilisation machinery (utilisome) | Descriptor: | DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ... | Authors: | White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B. | Deposit date: | 2022-06-29 | Release date: | 2023-06-07 | Last modified: | 2023-06-21 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes. Nature, 618, 2023
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8AA4
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8AA2
| Inactive levan utilisation machinery (utilisome) in the presence of levan fructo-oligosaccharides DP 15-25 | Descriptor: | DUF4960 domain-containing protein, Glycoside hydrolase family 32, MAGNESIUM ION, ... | Authors: | White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B. | Deposit date: | 2022-06-29 | Release date: | 2023-06-07 | Last modified: | 2023-06-21 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes. Nature, 618, 2023
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8AA3
| Core SusCD transporter units from the inactive levan utilisome in the presence of levan fructo-oligosaccharides DP 15-25 | Descriptor: | MAGNESIUM ION, SusC homolog, SusD homolog, ... | Authors: | White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B. | Deposit date: | 2022-06-29 | Release date: | 2023-06-07 | Last modified: | 2023-06-21 | Method: | ELECTRON MICROSCOPY (2.7 Å) | Cite: | Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes. Nature, 618, 2023
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8BN0
| Bacteroides thetaiotaomicron surface protein BT1954 bound to | Descriptor: | CHLORIDE ION, COB(II)INAMIDE, CYANIDE ION, ... | Authors: | Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B. | Deposit date: | 2022-11-11 | Release date: | 2023-08-16 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides. Nat Commun, 14, 2023
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8BMZ
| Bacteroides thetaiotaomicron surface lipoprotein BT1954 bound to adenosylcobalamin | Descriptor: | Adenosylcobalamin, CHLORIDE ION, Putative surface layer protein, ... | Authors: | Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B. | Deposit date: | 2022-11-11 | Release date: | 2023-08-16 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides. Nat Commun, 14, 2023
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8BMY
| Bacteroides thetaiotaomicron surface lipoprotein bound to cyanocobalamin | Descriptor: | CHLORIDE ION, CYANOCOBALAMIN, Putative surface layer protein, ... | Authors: | Abellon-Ruiz, J, Jana, K, Silale, A, Basle, A, Kleinekathofer, U, van den Berg, B. | Deposit date: | 2022-11-11 | Release date: | 2023-08-16 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides. Nat Commun, 14, 2023
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5FQ4
| Crystal structure of the lipoprotein BT2263 from Bacteroides thetaiotaomicron | Descriptor: | CALCIUM ION, PUTATIVE LIPOPROTEIN | Authors: | Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B. | Deposit date: | 2015-12-04 | Release date: | 2016-12-14 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Nature, 541, 2017
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5FQ7
| Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron | Descriptor: | BT_2261, BT_2262, BT_2263, ... | Authors: | Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B. | Deposit date: | 2015-12-07 | Release date: | 2016-12-21 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (3.4 Å) | Cite: | Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Nature, 541, 2017
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5FQ8
| Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron | Descriptor: | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 3-decanoyloxypropyl decanoate, BT_2262 (UNCHARACTERISED LIPOPROTEIN), ... | Authors: | Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B. | Deposit date: | 2015-12-07 | Release date: | 2016-12-21 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Nature, 541, 2017
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5FQ6
| Crystal structure of the SusCD complex BT2261-2264 from Bacteroides thetaiotaomicron | Descriptor: | 3-decanoyloxypropyl decanoate, BT_2261, CALCIUM ION, ... | Authors: | Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B. | Deposit date: | 2015-12-07 | Release date: | 2016-12-21 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Nature, 541, 2017
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5FQ3
| Crystal structure of the lipoprotein BT2262 from Bacteroides thetaiotaomicron | Descriptor: | BT_2262 | Authors: | Glenwright, A.J, Pothula, K.R, Chorev, D.S, Basle, A, Robinson, C.V, Kleinekathoefer, U, Bolam, D.N, van den Berg, B. | Deposit date: | 2015-12-04 | Release date: | 2016-12-14 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Structural basis for nutrient acquisition by dominant members of the human gut microbiota. Nature, 541, 2017
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5AF1
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5AEZ
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