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PDB: 116 results

5M9F
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BU of 5m9f by Molmil
Structure of the two C-terminal domains of bacteriophage K gp144
Descriptor: ACETATE ION, ORF68, SODIUM ION
Authors:Liu, A, Nguyen, T.H, van Raaij, M.J.
Deposit date:2016-11-01
Release date:2017-12-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of a Putative Receptor-Binding Protein of Staphylococcus Virus K
To Be Published
5NBH
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BU of 5nbh by Molmil
Structure of the distal domain of mouse adenovirus 2 fibre, P212121 native
Descriptor: Fiber, GLYCEROL
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2017-03-01
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and N-acetylglucosamine binding of the distal domain of mouse adenovirus 2 fibre.
J. Gen. Virol., 99, 2018
5NC1
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BU of 5nc1 by Molmil
Structure of the distal domain of mouse adenovirus 2 fibre bound to N-acetyl-glucosamine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fiber, GLYCEROL, ...
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2017-03-03
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and N-acetylglucosamine binding of the distal domain of mouse adenovirus 2 fibre.
J. Gen. Virol., 99, 2018
5N8D
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BU of 5n8d by Molmil
Structure of the distal domain of mouse adenovirus 2 fibre, P21 native
Descriptor: CHLORIDE ION, Fiber, GLYCEROL
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2017-02-23
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and N-acetylglucosamine binding of the distal domain of mouse adenovirus 2 fibre.
J. Gen. Virol., 99, 2018
5N83
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BU of 5n83 by Molmil
Structure of the distal domain of mouse adenovirus 2 fibre, methylmercury chloride derivative
Descriptor: Fiber, MERCURY (II) ION
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2017-02-22
Release date:2018-03-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structure and N-acetylglucosamine binding of the distal domain of mouse adenovirus 2 fibre.
J. Gen. Virol., 99, 2018
2JJL
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BU of 2jjl by Molmil
Structure of avian reovirus sigmaC117-326, P321 crystal form
Descriptor: CHLORIDE ION, SIGMA-C CAPSID PROTEIN, SULFATE ION, ...
Authors:Guardado-Calvo, P, Fox, G.C, Llamas-Saiz, A.L, Benavente, J, van Raaij, M.J.
Deposit date:2008-04-14
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre.
J. Gen. Virol., 90, 2009
3J4B
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BU of 3j4b by Molmil
Structure of T7 gatekeeper protein (gp11)
Descriptor: Tail tubular protein A
Authors:Cuervo, A, Pulido-Cid, M, Chagoyen, M, Arranz, R, Gonzalez-Garcia, V.A, Garcia-Doval, C, Caston, J.R, Valpuesta, J.M, van Raaij, M.J, Martin-Benito, J, Carrascosa, J.L.
Deposit date:2013-07-09
Release date:2013-08-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural characterization of the bacteriophage t7 tail machinery.
J.Biol.Chem., 288, 2013
2BSF
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BU of 2bsf by Molmil
Structure of the C-terminal receptor-binding domain of avian reovirus fibre sigmaC, Zn crystal form.
Descriptor: SIGMA C CAPSID PROTEIN, SULFATE ION, ZINC ION
Authors:Guardado Calvo, P, Fox, G.C, Hermo Parrado, X.L, Llamas-Saiz, A.L, van Raaij, M.J.
Deposit date:2005-05-20
Release date:2005-11-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac
J.Mol.Biol., 354, 2005
2VRS
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BU of 2vrs by Molmil
Structure of avian reovirus sigmaC117-326, C2 crystal form
Descriptor: CHLORIDE ION, GLYCEROL, SIGMA-C CAPSID PROTEIN, ...
Authors:Guardado-Calvo, P, Fox, G.C, Llamas-Saiz, A.L, Benavente, J, van Raaij, M.J.
Deposit date:2008-04-14
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre.
J. Gen. Virol., 90, 2009
3J4A
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BU of 3j4a by Molmil
Structure of gp8 connector protein
Descriptor: Head-to-tail joining protein
Authors:Cuervo, A, Pulido-Cid, M, Chagoyen, M, Arranz, R, Gonzalez-Garcia, V.A, Garcia-Doval, C, Caston, J.R, Valpuesta, J.M, van Raaij, M.J, Martin-Benito, J, Carrascosa, J.L.
Deposit date:2013-07-09
Release date:2013-08-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structural characterization of the bacteriophage t7 tail machinery.
J.Biol.Chem., 288, 2013
2IUN
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BU of 2iun by Molmil
Structure of the C-terminal head domain of the avian adenovirus CELO long fibre (P21 crystal form)
Descriptor: AVIAN ADENOVIRUS CELO LONG FIBRE, CALCIUM ION
Authors:Guardado-Calvo, P, Llamas-Saiz, A.L, Fox, G.C, van Raaij, M.J.
Deposit date:2006-06-06
Release date:2007-06-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber.
J. Gen. Virol., 88, 2007
2IUM
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BU of 2ium by Molmil
Structure of the C-terminal head domain of the avian adenovirus CELO long fibre (C2 crystal form)
Descriptor: AVIAN ADENOVIRUS CELO LONG FIBRE
Authors:Guardado-Calvo, P, Llamas-Saiz, A.L, Fox, G.C, van Raaij, M.J.
Deposit date:2006-06-06
Release date:2007-06-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber.
J. Gen. Virol., 88, 2007
3ZPF
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BU of 3zpf by Molmil
Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre
Descriptor: FIBER, PHOSPHATE ION
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2013-02-27
Release date:2014-03-12
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.
PLoS ONE, 10, 2015
3ZPE
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BU of 3zpe by Molmil
Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre
Descriptor: FIBER, PHOSPHATE ION
Authors:Singh, A.K, van Raaij, M.J.
Deposit date:2013-02-27
Release date:2014-03-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.
PLoS ONE, 10, 2015
4B6O
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BU of 4b6o by Molmil
Structure of Mycobacterium tuberculosis Type II Dehydroquinase inhibited by (2S)-2-(4-methoxy)benzyl-3-dehydroquinic acid
Descriptor: (1R,2S,4S,5R)-2-(4-methoxyphenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, SULFATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Lence, E, Tizon, L, Peon, A, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2012-08-14
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids.
ACS Chem. Biol., 8, 2013
4B6P
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BU of 4b6p by Molmil
Structure of Mycobacterium tuberculosis Type II Dehydroquinase inhibited by (2S)-2-Perfluorobenzyl-3-dehydroquinic acid
Descriptor: (1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, SULFATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Lence, E, Tizon, L, Peon, A, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2012-08-14
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids.
ACS Chem. Biol., 8, 2013
4B6R
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BU of 4b6r by Molmil
Structure of Helicobacter pylori Type II Dehydroquinase inhibited by (2S)-2-(4-methoxy)benzyl-3-dehydroquinic acid
Descriptor: (1R,2S,4S,5R)-2-(4-methoxyphenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, SULFATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Lence, E, Tizon, L, Peon, A, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2012-08-14
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids.
ACS Chem. Biol., 8, 2013
4B6Q
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BU of 4b6q by Molmil
Structure of Mycobacterium tuberculosis Type II Dehydroquinase inhibited by (2R)-2-(benzothiophen-5-yl)methyl-3-dehydroquinic acid
Descriptor: (1R,2R,4S,5R)-2-(benzo[b]thiophen-5-yl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, SULFATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Lence, E, Tizon, L, Peon, A, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2012-08-14
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids.
ACS Chem. Biol., 8, 2013
4B6S
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BU of 4b6s by Molmil
Structure of Helicobacter pylori Type II Dehydroquinase inhibited by (2S)-2-Perfluorobenzyl-3-dehydroquinic acid
Descriptor: (1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, PHOSPHATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Lence, E, Tizon, L, Peon, A, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2012-08-14
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids.
ACS Chem. Biol., 8, 2013
1PDM
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BU of 1pdm by Molmil
Fitting of gp8 structure into the cryoEM reconstruction of the bacteriophage T4 baseplate
Descriptor: Baseplate structural protein Gp8
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDL
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BU of 1pdl by Molmil
Fitting of gp5 in the cryoEM reconstruction of the bacteriophage T4 baseplate
Descriptor: Tail-associated lysozyme
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDJ
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BU of 1pdj by Molmil
Fitting of gp27 into cryoEM reconstruction of bacteriophage T4 baseplate
Descriptor: Baseplate structural protein Gp27
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDP
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BU of 1pdp by Molmil
Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction
Descriptor: Baseplate structural protein Gp9
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of the bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
1PDF
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BU of 1pdf by Molmil
Fitting of gp11 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 baseplate-tail tube complex
Descriptor: Baseplate structural protein Gp11
Authors:Kostyuchenko, V.A, Leiman, P.G, Chipman, P.R, Kanamaru, S, van Raaij, M.J, Arisaka, F, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2003-05-19
Release date:2003-09-09
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Three-dimensional structure of bacteriophage T4 baseplate
Nat.Struct.Biol., 10, 2003
2WT2
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BU of 2wt2 by Molmil
Galectin domain of porcine adenovirus type 4 NADC-1 isolate fibre complexed with tri(N-acetyl-lactosamine)
Descriptor: NITRATE ION, PUTATIVE FIBER PROTEIN, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Guardado-Calvo, P, Munoz, E.M, Llamas-Saiz, A.L, Fox, G.C, Glasgow, J.N, van Raaij, M.J.
Deposit date:2009-09-10
Release date:2010-08-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic structure of porcine adenovirus type 4 fiber head and galectin domains.
J. Virol., 84, 2010

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