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PDB: 357 件

8IKT
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BU of 8ikt by Molmil
Ternary trans-complex of phospho-parkin with cis ACT and pUb
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-AMINOPROPANE, E3 ubiquitin-protein ligase parkin, ...
著者Lenka, D.R, Kumar, A.
登録日2023-03-01
公開日2024-09-11
最終更新日2024-09-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Additional feedforward mechanism of Parkin activation via binding of phospho-UBL and RING0 in trans.
Elife, 13, 2024
8IKV
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BU of 8ikv by Molmil
pUbl depleted phospho-Parkin(K211N,R163D) in complex with pUb
分子名称: DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase parkin, Ubiquitin, ...
著者Lenka, D.R, Kumar, A.
登録日2023-03-01
公開日2024-09-11
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Additional feedforward mechanism of Parkin activation via binding of phospho-UBL and RING0 in trans.
Elife, 13, 2024
5Z40
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BU of 5z40 by Molmil
Crystal structure of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans R1
分子名称: Pyrrolidone-carboxylate peptidase
著者Agrawal, R, Kumar, A, Makde, R.D.
登録日2018-01-09
公開日2019-01-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.837 Å)
主引用文献Crystal structures of pyrrolidone carboxylate peptidase I from Deionococcus radiodurans reveal the mechanism of L-pyroglutamate recognition
To Be Published
2NDE
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BU of 2nde by Molmil
Solution Structure of Mutant of BMAP-28(1-18)
分子名称: Cathelicidin-5
著者Agadi, N, Kumar, A.
登録日2016-05-12
公開日2017-09-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure, Function And Membrane Interaction Studies of Two Synthetic Peptides Using Solution And Solid State NMR
To be Published
2NDC
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BU of 2ndc by Molmil
Solution Structure of BMAP-28(1-18)
分子名称: Cathelicidin-5
著者Agadi, N, Kumar, A.
登録日2016-05-12
公開日2017-09-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure, Function And Membrane Interaction Studies Of Two Synthetic Antimicrobial Peptides Using Solution And Solid State NMR
To be Published
8J9D
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BU of 8j9d by Molmil
Crystal structure of M61 peptidase (bestatin-bound) from Xanthomonas campestris
分子名称: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
著者Yadav, P, Kumar, A, Kulkarni, B.S, Jamdar, S.N, Makde, R.D.
登録日2023-05-03
公開日2024-05-01
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids.
Febs J., 291, 2024
6A4S
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BU of 6a4s by Molmil
Crystal structure of peptidase E with ordered active site loop from Salmonella enterica
分子名称: Peptidase E
著者Yadav, P, Chandravanshi, K, Goyal, V.D, Singh, R, Kumar, A, Gokhale, S.M, Makde, R.D.
登録日2018-06-20
公開日2018-10-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
9EDN
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BU of 9edn by Molmil
GII.23: Loreto1847 norovirus protruding domain
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, VP1
著者Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S.
登録日2024-11-17
公開日2025-03-05
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 2025
9EDM
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BU of 9edm by Molmil
GII.9-VA97207 norovirus protruding domain
分子名称: CHLORIDE ION, Capsid
著者Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S.
登録日2024-11-17
公開日2025-03-05
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 2025
9EDO
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BU of 9edo by Molmil
GII.27: Loreto0959 norovirus protruding domain
分子名称: CHLORIDE ION, VP1
著者Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S.
登録日2024-11-17
公開日2025-03-05
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 2025
9EDQ
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BU of 9edq by Molmil
GX/NPIH26 bat norovirus protruding domain
分子名称: SULFATE ION, VP1
著者Holroyd, D.L, Kumar, A, Bruning, J.B, Hansman, G.S.
登録日2024-11-17
公開日2025-03-05
最終更新日2025-03-19
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Antigenic structural analysis of bat and human norovirus protruding (P) domains.
J.Virol., 2025
7TVI
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BU of 7tvi by Molmil
Alpha1/BetaB Heteromeric Glycine Receptor in Glycine-Bound State
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, Glycine receptor beta subunit 2, ...
著者Gibbs, E, Chakrapani, S, Kumar, A.
登録日2022-02-04
公開日2023-03-22
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Conformational transitions and allosteric modulation in a heteromeric glycine receptor
Nat Commun, 14, 2023
7TU9
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BU of 7tu9 by Molmil
Alpha1/BetaB Heteromeric Glycine Receptor in Strychnine-Bound State
分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycine receptor beta subunit 2, ...
著者Gibbs, E, Kumar, A, Chakrapani, S.
登録日2022-02-02
公開日2023-03-22
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Conformational transitions and allosteric modulation in a heteromeric glycine receptor
Nat Commun, 14, 2023
6EOJ
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BU of 6eoj by Molmil
PolyA polymerase module of the cleavage and polyadenylation factor (CPF) from Saccharomyces cerevisiae
分子名称: Polyadenylation factor subunit 2,Polyadenylation factor subunit 2, Protein CFT1, ZINC ION, ...
著者Casanal, A, Kumar, A, Hill, C.H, Emsley, P, Passmore, L.A.
登録日2017-10-09
公開日2017-11-15
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.55 Å)
主引用文献Architecture of eukaryotic mRNA 3'-end processing machinery.
Science, 358, 2017
6A4R
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BU of 6a4r by Molmil
Crystal structure of aspartate bound peptidase E from Salmonella enterica
分子名称: ASPARTIC ACID, Peptidase E
著者Yadav, P, Chandravanshi, K, Goyal, V.D, Singh, R, Kumar, A, Gokhale, S.M, Makde, R.D.
登録日2018-06-20
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.828 Å)
主引用文献Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
8J9C
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BU of 8j9c by Molmil
Crystal structure of M61 peptidase (apo-form) from Xanthomonas campestris
分子名称: GLYCEROL, Putative glycyl aminopeptidase, SODIUM ION, ...
著者Yadav, P, Kumar, A, Jamdar, S.N, Makde, R.D.
登録日2023-05-03
公開日2024-05-01
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids.
Febs J., 291, 2024
8TU9
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BU of 8tu9 by Molmil
Cryo-EM structure of HGSNAT-acetyl-CoA complex at pH 7.5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYL COENZYME *A, Enhanced green fluorescent protein,Heparan-alpha-glucosaminide N-acetyltransferase,Isoform 2 of Heparan-alpha-glucosaminide N-acetyltransferase
著者Navratna, V, Kumar, A, Mosalaganti, S.
登録日2023-08-15
公開日2024-02-07
最終更新日2024-11-20
実験手法ELECTRON MICROSCOPY (3.26 Å)
主引用文献Structure of the human heparan-alpha-glucosaminide N -acetyltransferase (HGSNAT).
Elife, 13, 2024
2NAF
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BU of 2naf by Molmil
Solution structure of peptidyl-tRNA hydrolase from Mycobacterium smegmatis
分子名称: Peptidyl-tRNA hydrolase
著者Yadav, R, Pathak, P, Fatma, F, Kabra, A, Pulavarti, S, Jain, A, Kumar, A, Shukla, V, Arora, A.
登録日2015-12-23
公開日2017-01-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural characterization of peptidyl-tRNA hydrolase from Mycobacterium smegmatis by NMR spectroscopy.
Biochim.Biophys.Acta, 1864, 2016
7DF5
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BU of 7df5 by Molmil
Human Galectin-3 CRD in complex with novel tetrahydropyran-based thiodisaccharide mimic inhibitor
分子名称: (2R,3R,4S,5R,6S)-2-(hydroxymethyl)-5-methoxy-6-[(3R,4R,5S)-4-oxidanyl-5-(4-pyrimidin-5-yl-1,2,3-triazol-1-yl)oxan-3-yl]sulfanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-3-ol, CHLORIDE ION, Galectin-3, ...
著者Ghosh, K, Kumar, A.
登録日2020-11-06
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Synthesis, Structure-Activity Relationships, and In Vivo Evaluation of Novel Tetrahydropyran-Based Thiodisaccharide Mimics as Galectin-3 Inhibitors.
J.Med.Chem., 64, 2021
8OUI
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BU of 8oui by Molmil
Complex of ASCT2 with Suppressyn
分子名称: ALANINE, Neutral amino acid transporter B(0), Suppressyn
著者Khare, S, Kumar, A, Reyes, N.
登録日2023-04-23
公開日2024-05-01
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.39 Å)
主引用文献Receptor-recognition and antiviral mechanisms of retrovirus-derived human proteins.
Nat.Struct.Mol.Biol., 31, 2024
1BPB
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BU of 1bpb by Molmil
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM
分子名称: DNA POLYMERASE BETA
著者Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J.
登録日1994-04-12
公開日1994-06-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.
Science, 264, 1994
1BPD
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BU of 1bpd by Molmil
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM
分子名称: DNA POLYMERASE BETA, PHOSPHATE ION
著者Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J.
登録日1994-04-12
公開日1994-06-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.
Science, 264, 1994
7TJI
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BU of 7tji by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 2) with flexible Orc6 N-terminal domain
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
著者Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
登録日2022-01-16
公開日2022-10-05
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
7TJH
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BU of 7tjh by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 1) with flexible Orc6 N-terminal domain
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
著者Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
登録日2022-01-16
公開日2022-10-05
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022
7TJK
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BU of 7tjk by Molmil
S. cerevisiae ORC bound to 84 bp ARS1 DNA and Cdc6 (state 2) with docked Orc6 N-terminal domain
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 6, DNA, ...
著者Schmidt, J.M, Yang, R, Kumar, A, Hunker, O, Bleichert, F.
登録日2022-01-16
公開日2022-10-05
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献A mechanism of origin licensing control through autoinhibition of S. cerevisiae ORC·DNA·Cdc6.
Nat Commun, 13, 2022

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件を2025-04-02に公開中

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