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PDB: 1659 件

7WHP
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Pentameric turret of Bombyx mori cytoplasmic polyhedrosis virus after spike detaches.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, S-ADENOSYLMETHIONINE, Structural protein VP3
著者Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
登録日2021-12-31
公開日2022-02-02
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
6A54
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Crystal structure of DddK mutant Y64A
分子名称: MANGANESE (II) ION, Novel protein with potential Cupin domain
著者Zhang, Y.Z, Li, C.Y.
登録日2018-06-21
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK.
Appl. Environ. Microbiol., 85, 2019
6A55
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Crystal structure of DddK mutant Y122A
分子名称: 3-(dimethyl-lambda~4~-sulfanyl)propanoic acid, MANGANESE (II) ION, Novel protein with potential Cupin domain
著者Zhang, Y.Z, Li, C.Y.
登録日2018-06-21
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK.
Appl. Environ. Microbiol., 85, 2019
5D4D
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Crystal structure of Thermus thermophilus product complex for transcription initiation with NAD and CTP
分子名称: ADENOSINE MONOPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, ...
著者Zhang, Y, Ebright, R.H.
登録日2015-08-07
公開日2016-07-06
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA.
Nature, 535, 2016
5D4C
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Crystal structure of Thermus thermophilus product complex for transcription initiation with ATP and CTP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, ...
著者Zhang, Y, Ebright, R.H.
登録日2015-08-07
公開日2016-07-06
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA.
Nature, 535, 2016
2P73
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crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1
分子名称: MANGANESE (II) ION, Putative glycosyltransferase (Mannosyltransferase) involved in glycosylating the PBCV-1 major capsid protein, URIDINE-5'-DIPHOSPHATE
著者Zhang, Y, Xiang, Y, Van Etten, J.L, Rossmann, M.G.
登録日2007-03-19
公開日2007-08-21
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and function of a chlorella virus-encoded glycosyltransferase.
Structure, 15, 2007
2P72
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crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1
分子名称: MANGANESE (II) ION, Putative glycosyltransferase (Mannosyltransferase) involved in glycosylating the PBCV-1 major capsid protein, URIDINE-5'-DIPHOSPHATE-GLUCOSE
著者Zhang, Y, Xiang, Y, Van Etten, J.L, Rossmann, M.G.
登録日2007-03-19
公開日2007-08-21
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and function of a chlorella virus-encoded glycosyltransferase.
Structure, 15, 2007
2P6W
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Crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1
分子名称: CITRATE ANION, MANGANESE (II) ION, Putative glycosyltransferase (Mannosyltransferase) involved in glycosylating the PBCV-1 major capsid protein
著者Zhang, Y, Ye, X, Van Etten, J.L, Rossmann, M.G.
登録日2007-03-19
公開日2007-08-21
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure and function of a chlorella virus-encoded glycosyltransferase.
Structure, 15, 2007
7F3I
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Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
分子名称: RNA (5'-R(*GP*UP*(5MC)P*CP*(5MC))-3'), Y-box-binding protein 2
著者Zhang, Y, Huang, Y.
登録日2021-06-16
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
To Be Published
7F3K
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Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
分子名称: RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3'), SULFATE ION, Y-box-binding protein 2
著者Zhang, Y, Huang, Y.
登録日2021-06-16
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
To Be Published
3F3R
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Crystal structure of yeast Thioredoxin1-glutathione mixed disulfide complex
分子名称: GLUTATHIONE, SULFATE ION, Thioredoxin-1
著者Zhang, Y.R, Bao, R, Zhou, C.Z, Chen, Y.X.
登録日2008-10-31
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and kinetic analysis of Saccharomyces cerevisiae thioredoxin Trx1: implications for the catalytic mechanism of GSSG reduced by the thioredoxin system
Biochim.Biophys.Acta, 1794, 2009
5VTM
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The crystal structure of minor pseudopilin ternary complex of XcpVWX from the Type 2 secretion system of Pseudomonas aeruginosa
分子名称: CALCIUM ION, Type II secretion system protein I, Type II secretion system protein J, ...
著者Zhang, Y, Jia, Z.
登録日2017-05-17
公開日2018-05-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.041 Å)
主引用文献Structure-guided disruption of the pseudopilus tip complex inhibits the Type II secretion in Pseudomonas aeruginosa.
PLoS Pathog., 14, 2018
2QCX
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Crystal structure of Bacillus subtilis TenA Y112F mutant complexed with formyl aminomethyl pyrimidine
分子名称: N-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-N-(2-HYDROXYETHYL)FORMAMIDE, Transcriptional activator tenA
著者Zhang, Y, Jenkins, A.L, Begley, T.P, Ealick, S.E.
登録日2007-06-19
公開日2007-10-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Mutagenesis studies on TenA: A thiamin salvage enzyme from Bacillus subtilis
Bioorg.Chem., 36, 2008
7XS3
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AlXyn26A E243A-X3X4X
分子名称: AlXyn26A E243A-X3X4X, beta-D-xylopyranose-(1-3)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
著者Zhang, Y.Z, Chen, X.L, Zhao, F, Yu, C.M.
登録日2022-05-12
公開日2023-05-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A novel class of xylanases specifically degrade marine red algal beta 1,3/1,4-mixed-linkage xylan.
J.Biol.Chem., 299, 2023
2R87
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Crystal structure of PurP from Pyrococcus furiosus complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, PurP protein PF1517
著者Zhang, Y, White, R.H, Ealick, S.E.
登録日2007-09-10
公開日2007-12-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii.
Biochemistry, 47, 2008
1PQN
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dominant negative human hDim1 (hDim1 1-128)
分子名称: Spliceosomal U5 snRNP-specific 15 kDa protein
著者Zhang, Y.Z, Cheng, H, Gould, K.L, Golemis, E.A, Roder, H.
登録日2003-06-18
公開日2003-08-26
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure, stability and function of hDim1 investigated by NMR, circular dichroism and mutational analysis
Biochemistry, 42, 2003
7XJR
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BU of 7xjr by Molmil
MLXase AlXyn26A
分子名称: AlXyn26A
著者Zhang, Y.Z, Chen, X.L, Zhao, F, Yu, C.M.
登録日2022-04-18
公開日2023-04-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A novel class of xylanases specifically degrade marine red algal beta 1,3/1,4-mixed-linkage xylan.
J.Biol.Chem., 299, 2023
6N33
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Crystal structure of fms kinase domain with a small molecular inhibitor, PLX5622
分子名称: 6-fluoro-N-[(5-fluoro-2-methoxypyridin-3-yl)methyl]-5-[(5-methyl-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]pyridin-2-amine, Macrophage colony-stimulating factor 1 receptor
著者Zhang, Y.
登録日2018-11-14
公開日2019-09-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Sustained microglial depletion with CSF1R inhibitor impairs parenchymal plaque development in an Alzheimer's disease model.
Nat Commun, 10, 2019
3F3Q
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Crystal structure of the oxidised form of thioredoxin 1 from saccharomyces cerevisiae
分子名称: Thioredoxin-1, ZINC ION
著者Zhang, Y.R, Bao, R, Zhou, C.Z, Chen, Y.X.
登録日2008-10-31
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structural and kinetic analysis of Saccharomyces cerevisiae thioredoxin Trx1: implications for the catalytic mechanism of GSSG reduced by the thioredoxin system
Biochim.Biophys.Acta, 1794, 2009
4R7H
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BU of 4r7h by Molmil
Crystal structure of FMS KINASE domain with a small molecular inhibitor, PLX3397
分子名称: 5-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-{[6-(trifluoromethyl)pyridin-3-yl]methyl}pyridin-2-amine, Macrophage colony-stimulating factor 1 receptor
著者Zhang, Y, Zhang, K, Zhang, C.
登録日2014-08-27
公開日2015-08-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8001 Å)
主引用文献Structure-Guided Blockade of CSF1R Kinase in Tenosynovial Giant-Cell Tumor.
N Engl J Med, 373, 2015
7F3J
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Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
分子名称: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
著者Zhang, Y, Huang, Y.
登録日2021-06-16
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
To Be Published
1TZ3
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crystal structure of aminoimidazole riboside kinase complexed with aminoimidazole riboside
分子名称: 5-AMINOIMIDAZOLE RIBONUCLEOSIDE, POTASSIUM ION, putative sugar kinase
著者Zhang, Y, Dougherty, M, Downs, D.M, Ealick, S.E.
登録日2004-07-09
公開日2004-10-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of an Aminoimidazole Riboside Kinase from Salmonella enterica; Implications for the Evolution of the Ribokinase Superfamily
STRUCTURE, 12, 2004
1U7D
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crystal structure of apo M. jannashii tyrosyl-tRNA synthetase
分子名称: Tyrosyl-tRNA synthetase
著者Zhang, Y, Wang, L, Schultz, P.G, Wilson, I.A.
登録日2004-08-03
公開日2005-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine.
Protein Sci., 14, 2005
1TYY
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Crystal structure of aminoimidazole riboside kinase from Salmonella enterica
分子名称: POTASSIUM ION, putative sugar kinase
著者Zhang, Y, Dougherty, M, Downs, D.M, Ealick, S.E.
登録日2004-07-08
公開日2004-10-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of an Aminoimidazole Riboside Kinase from Salmonella enterica; Implications for the Evolution of the Ribokinase Superfamily
STRUCTURE, 12, 2004
1U7X
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crystal structure of a mutant M. jannashii tyrosyl-tRNA synthetase specific for O-methyl-tyrosine
分子名称: POTASSIUM ION, Tyrosyl-tRNA synthetase
著者Zhang, Y, Wang, L, Schultz, P.G, Wilson, I.A.
登録日2004-08-04
公開日2005-05-24
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine.
Protein Sci., 14, 2005

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