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PDB: 25 results

1NH4
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BU of 1nh4 by Molmil
Structure of the coat protein in fd filamentous bacteriophage particles
Descriptor: Major coat protein
Authors:Zeri, A.C, Mesleh, M.F, Nevzorov, A.A, Opella, S.J.
Deposit date:2002-12-18
Release date:2003-05-06
Last modified:2024-05-22
Method:SOLID-STATE NMR
Cite:Structure of the coat protein in fd filamentous bacteriophage particles determined by solid-state NMR spectroscopy
Proc.Natl.Acad.Sci.USA, 100, 2003
7MBG
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BU of 7mbg by Molmil
SARS-CoV-2 Main protease in orthorhombic space group
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Fearon, D, Douangamath, A, von Delft, F, Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-03-31
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
4U39
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BU of 4u39 by Molmil
Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
Descriptor: Cell division factor, Cell division protein FtsZ, PHOSPHATE ION
Authors:Bisson-Filho, A.W, Discola, K.F, Castellen, P, Blasios, V, Martins, A, Sforca, M.L, Garcia, W, Zeri, A.C, Erickson, H.P, Dessen, A, Gueiros-Filho, F.J.
Deposit date:2014-07-19
Release date:2015-03-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Crystal Structure of FtsZ:MciZ Complex from Bacillus subtilis
To be Published
5KLE
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BU of 5kle by Molmil
Structure of CBM_E1, a novel carbohydrate-binding module found by sugar cane soil metagenome, complexed with cellopentaose
Descriptor: Carbohydrate binding module E1, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Liberato, M.V, Campos, B.M, Zeri, A.C.M, Squina, F.M.
Deposit date:2016-06-24
Release date:2016-09-21
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.
J.Biol.Chem., 291, 2016
5KLF
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BU of 5klf by Molmil
Structure of CBM_E1, a novel carbohydrate-binding module found by sugar cane soil metagenome, complexed with cellopentaose and gadolinium ion
Descriptor: Carbohydrate binding module E1, GADOLINIUM ATOM, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Liberato, M.V, Campos, B.M, Zeri, A.C.M, Squina, F.M.
Deposit date:2016-06-24
Release date:2016-09-21
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.
J.Biol.Chem., 291, 2016
5KLC
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BU of 5klc by Molmil
Structure of CBM_E1, a novel carbohydrate-binding module found by sugar cane soil metagenome
Descriptor: Carbohydrate binding module E1
Authors:Liberato, M.V, Campos, B.M, Zeri, A.C.M, Squina, F.M.
Deposit date:2016-06-24
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.746 Å)
Cite:A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.
J.Biol.Chem., 291, 2016
7N5Z
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BU of 7n5z by Molmil
SARS-CoV-2 Main protease C145S mutant
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-06-07
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7N6N
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BU of 7n6n by Molmil
SARS-CoV-2 Main protease C145S mutant in complex with N and C-terminal residues
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2021-06-08
Release date:2021-06-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
2JV8
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BU of 2jv8 by Molmil
Solution structure of protein NE1242 from Nitrosomonas europaea. Northeast Structural Genomics Consortium Target NeT4
Descriptor: Uncharacterized protein NE1242
Authors:Wu, Y, Yee, A, Zeri, A.C, Guido, V, Sukumaran, D, Arrowsmith, C.H, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-09-12
Release date:2007-12-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution NMR structure of protein NE1242 from Nitrosomonas europaea.
To be Published
2JR1
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BU of 2jr1 by Molmil
Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa.
Descriptor: Virulence regulator
Authors:Rosselli, L.K, Sforca, M.L, Souza, A.P, Zeri, A.C.
Deposit date:2007-06-18
Release date:2007-09-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from the phytopathogen Xylella fastidiosa.
To be Published
2KDO
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BU of 2kdo by Molmil
Structure of the human Shwachman-Bodian-Diamond syndrome protein, SBDS
Descriptor: Ribosome maturation protein SBDS
Authors:de Oliveira, J.F, Sforca, M.L, Blumenschein, T, Guimaraes, B.G, Zanchin, N.I.T, Zeri, A.C.
Deposit date:2009-01-14
Release date:2010-01-19
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structure, dynamics, and RNA interaction analysis of the human SBDS protein.
J.Mol.Biol., 396, 2010
2L8A
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BU of 2l8a by Molmil
Structure of a novel CBM3 lacking the calcium-binding site
Descriptor: Endoglucanase
Authors:Paiva, J.H, Meza, A.N, Sforca, M.L, Navarro, R.Z, Neves, J.L, Santos, C.R, Murakami, M.T, Zeri, A.C.
Deposit date:2011-01-07
Release date:2011-12-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168.
Biochem.J., 441, 2012
2KQ5
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BU of 2kq5 by Molmil
Solution NMR structure of a section of the repeat domain of the type III effector protein PthA
Descriptor: Avirulence protein
Authors:Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C.
Deposit date:2009-10-28
Release date:2010-09-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions
To be Published
2MRW
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BU of 2mrw by Molmil
Solution Structure of MciZ from Bacillus subtilis
Descriptor: Cell division factor
Authors:Castellen, P, Sforca, M.L, Zeri, A.C.M, Gueiros-Filho, F.J.
Deposit date:2014-07-16
Release date:2015-03-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:FtsZ filament capping by MciZ, a developmental regulator of bacterial division.
Proc.Natl.Acad.Sci.USA, 112, 2015
7KPH
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BU of 7kph by Molmil
SARS-CoV-2 Main Protease in mature form
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2020-11-11
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7KFI
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BU of 7kfi by Molmil
SARS-CoV-2 Main protease immature form - apo structure
Descriptor: 3C-like proteinase, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2020-10-14
Release date:2020-10-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7KVR
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BU of 7kvr by Molmil
SARS-CoV-2 Main protease immature form - FMAX Library E09 fragment
Descriptor: 3C-like proteinase, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2020-11-28
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7KVL
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BU of 7kvl by Molmil
SARS-CoV-2 Main protease immature form - FMAX Library E01 fragment
Descriptor: 2-chloropyridine-4-carboxamide, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2020-11-28
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7JR4
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BU of 7jr4 by Molmil
SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues
Descriptor: 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Nascimento, A.F.Z, de Oliveira, R.R, Zeri, A.C.M, Trivella, D.B.B.
Deposit date:2020-08-11
Release date:2020-08-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:SARS-CoV-2 3CL protease with alternative conformation of the active site promoted by methylene-bridged cysteine and lysine residues
To be Published
7JR3
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BU of 7jr3 by Molmil
SARS-CoV-2 3CL protease crystallized under reducing conditions
Descriptor: 3C-like proteinase
Authors:de Oliveira, R.R, Nascimento, A.F.Z, Zeri, A.C.M, Trivella, D.B.B.
Deposit date:2020-08-11
Release date:2020-08-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:SARS-CoV-2 3CL protease crystallized under reducing conditions.
To be Published
7LDX
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BU of 7ldx by Molmil
SARS-CoV-2 Main protease immature form - F2X Entry Library E06 fragment
Descriptor: (3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-ol, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-01-14
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7LFP
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BU of 7lfp by Molmil
SARS-CoV-2 Main protease immature form - F2X Entry Library G05 fragment
Descriptor: 3C-like proteinase, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-01-18
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
7LFE
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BU of 7lfe by Molmil
SARS-CoV-2 Main protease immature form - F2X Entry Library E03 fragment
Descriptor: (2R,4R)-1-phenylhexahydropyrimidine-2,4-diol, 3C-like proteinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Noske, G.D, Nakamura, A.M, Gawriljuk, V.O, Lima, G.M.A, Zeri, A.C.M, Nascimento, A.F.Z, Oliva, G, Godoy, A.S.
Deposit date:2021-01-16
Release date:2021-02-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:A Crystallographic Snapshot of SARS-CoV-2 Main Protease Maturation Process.
J.Mol.Biol., 433, 2021
2M70
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BU of 2m70 by Molmil
Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
Descriptor: Poly(A)-binding protein 1
Authors:Sforca, M.L, Domingues, M.N, Zeri, A.C.M, Benedetti, C.E.
Deposit date:2013-04-16
Release date:2014-04-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural determination of the Citrus sinensis Poly(A)-Binding Protein CsPABP1
To be Published
2M4I
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BU of 2m4i by Molmil
Solution structure of Bacillus subtilis MinC N-terminal domain
Descriptor: Septum site-determining protein MinC
Authors:Castellen, P, Sforca, M.L, Zeri, A.C.M, Gueiros-Filho, F.J.
Deposit date:2013-02-05
Release date:2014-03-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of Bacillus subtilis MinC N-terminal domain
To be Published

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