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PDB: 82 results

3RG1
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BU of 3rg1 by Molmil
Crystal structure of the RP105/MD-1 complex
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, CD180 molecule, LY86 protein, ...
Authors:Yoon, S.I, Hong, M, Wilson, I.A.
Deposit date:2011-04-07
Release date:2011-08-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:An unusual dimeric structure and assembly for TLR4 regulator RP105-MD-1.
Nat.Struct.Mol.Biol., 18, 2011
3LQM
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BU of 3lqm by Molmil
Structure of the IL-10R2 Common Chain
Descriptor: GLYCEROL, Interleukin-10 receptor subunit beta, SULFATE ION
Authors:Yoon, S.I, Walter, M.R.
Deposit date:2010-02-09
Release date:2010-05-26
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structure and mechanism of receptor sharing by the IL-10R2 common chain.
Structure, 18, 2010
3MTX
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BU of 3mtx by Molmil
Crystal structure of chicken MD-1
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, GLYCEROL, Protein MD-1, ...
Authors:Yoon, S.I, Hong, M, Han, G.W, Wilson, I.A.
Deposit date:2010-05-01
Release date:2010-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of soluble MD-1 and its interaction with lipid IVa.
Proc.Natl.Acad.Sci.USA, 107, 2010
2H24
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BU of 2h24 by Molmil
Crystal structure of human IL-10
Descriptor: Interleukin-10
Authors:Yoon, S.I, Walter, M.R.
Deposit date:2006-05-18
Release date:2006-10-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Conformational changes mediate interleukin-10 receptor 2 (IL-10R2) binding to IL-10 and assembly of the signaling complex.
J.Biol.Chem., 281, 2006
3MU3
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BU of 3mu3 by Molmil
Crystal structure of chicken MD-1 complexed with lipid IVa
Descriptor: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, 2-deoxy-3-O-[(3R)-3-hydroxytetradecanoyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-4-O-phosphono-beta-D-glucopyranose, GLYCEROL, ...
Authors:Yoon, S.I, Hong, M, Han, G.W, Wilson, I.A.
Deposit date:2010-05-01
Release date:2010-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of soluble MD-1 and its interaction with lipid IVa.
Proc.Natl.Acad.Sci.USA, 107, 2010
1Y6M
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BU of 1y6m by Molmil
Crystal structure of Epstein-Barr virus IL-10 complexed with the soluble IL-10R1 chain
Descriptor: Interleukin-10 receptor alpha chain, Viral interleukin-10 homolog
Authors:Yoon, S.I, Jones, B.C, Logsdon, N.J, Walter, M.R.
Deposit date:2004-12-06
Release date:2005-05-03
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Same structure, different function crystal structure of the Epstein-Barr virus IL-10 bound to the soluble IL-10R1 chain.
Structure, 13, 2005
1Y6K
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BU of 1y6k by Molmil
Crystal structure of human IL-10 complexed with the soluble IL-10R1 chain
Descriptor: Interleukin-10, Interleukin-10 receptor alpha chain
Authors:Yoon, S.I, Jones, B.C, Josepson, K, Logsdon, N.J, Walter, M.R.
Deposit date:2004-12-06
Release date:2005-12-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Same structure, different function crystal structure of the Epstein-Barr virus IL-10 bound to the soluble IL-10R1 chain.
Structure, 13, 2005
1Y6N
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BU of 1y6n by Molmil
Crystal structure of Epstein-Barr virus IL-10 mutant (A87I) complexed with the soluble IL-10R1 chain
Descriptor: Interleukin-10 receptor alpha chain, Viral interleukin-10 homolog
Authors:Yoon, S.I, Jones, B.C, Logsdon, N.J, Walter, M.R.
Deposit date:2004-12-06
Release date:2005-05-03
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Same structure, different function crystal structure of the Epstein-Barr virus IL-10 bound to the soluble IL-10R1 chain.
Structure, 13, 2005
3V47
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BU of 3v47 by Molmil
Crystal structure of the N-terminal fragment of zebrafish TLR5 in complex with Salmonella flagellin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Flagellin, ...
Authors:Yoon, S.I, Hong, H, Wilson, I.A.
Deposit date:2011-12-14
Release date:2012-02-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structural basis of TLR5-flagellin recognition and signaling.
Science, 335, 2012
3V44
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BU of 3v44 by Molmil
Crystal structure of the N-terminal fragment of zebrafish TLR5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 5b and variable lymphocyte receptor B.61 chimeric protein
Authors:Yoon, S.I, Hong, H, Wilson, I.A.
Deposit date:2011-12-14
Release date:2012-02-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Structural basis of TLR5-flagellin recognition and signaling.
Science, 335, 2012
6J3D
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BU of 6j3d by Molmil
Crystal structure of acetolactate decarboxylase from Bacillus subtilis subspecies spizizenii in space group P21212
Descriptor: Alpha-acetolactate decarboxylase, ZINC ION
Authors:Yoon, S.I.
Deposit date:2019-01-04
Release date:2019-11-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of alpha-acetolactate decarboxylase from Bacillus subtilis subspecies spizizeni.
Korean J Microbiol., 55, 2019
8IEU
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BU of 8ieu by Molmil
Crystal structure of the DUF2891 family protein CJ0554 from Campylobacter jejuni in space group P41212
Descriptor: DUF2891 domain-containing protein
Authors:Kim, S.Y, Cho, H.Y, Yoon, S.I.
Deposit date:2023-02-16
Release date:2023-05-31
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Unique dimeric structure of the DUF2891 family protein CJ0554 from Campylobacter jejuni.
Biochem.Biophys.Res.Commun., 655, 2023
8IEV
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BU of 8iev by Molmil
Crystal structure of the DUF2891 family protein CJ0554 from Campylobacter jejuni in space group C2
Descriptor: DUF2891 domain-containing protein
Authors:Kim, S.Y, Cho, H.Y, Yoon, S.I.
Deposit date:2023-02-16
Release date:2023-05-31
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Unique dimeric structure of the DUF2891 family protein CJ0554 from Campylobacter jejuni.
Biochem.Biophys.Res.Commun., 655, 2023
5IHY
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BU of 5ihy by Molmil
The crystal structure of Bacillus subtilis SeMet-YpgQ
Descriptor: NICKEL (II) ION, Uncharacterized protein
Authors:Jeon, Y.J, Song, W.S, Yoon, S.I.
Deposit date:2016-03-01
Release date:2016-04-27
Last modified:2016-06-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical characterization of bacterial YpgQ protein reveals a metal-dependent nucleotide pyrophosphohydrolase
J.Struct.Biol., 195, 2016
7YMO
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BU of 7ymo by Molmil
Crystal structure of the recombination mediator protein RecO from Campylobacter jejuni
Descriptor: Recombination protein RecO, ZINC ION
Authors:Lee, S, Oh, H.B, Yoon, S.I.
Deposit date:2022-07-29
Release date:2022-08-31
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the Recombination Mediator Protein RecO from Campylobacter jejuni and Its Interaction with DNA and a Zinc Ion.
Int J Mol Sci, 23, 2022
7YLF
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BU of 7ylf by Molmil
Crystal structure of the chicken Toll-like receptor 15 TIR domain (2-mercaptoethanol adduct)
Descriptor: GLYCEROL, SULFATE ION, Toll-like receptor 15
Authors:Ko, K.Y, Song, W.S, Yoon, S.I.
Deposit date:2022-07-26
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of the Toll-like receptor 15 TIR domain.
Iucrj, 10, 2023
7YLG
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BU of 7ylg by Molmil
Crystal structure of the chicken Toll-like receptor 15 TIR domain (glutathione adduct)
Descriptor: GLUTATHIONE, Toll-like receptor 2
Authors:Ko, K.Y, Song, W.S, Yoon, S.I.
Deposit date:2022-07-26
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of the Toll-like receptor 15 TIR domain.
Iucrj, 10, 2023
6M58
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BU of 6m58 by Molmil
Crystal structure of a complex between human serum albumin and the antibody Fab SL335
Descriptor: Heavy chain of the SL335 antibody fab, Light chain of the SL335 antibody Fab, Serum albumin
Authors:Cho, S.Y, Yoon, S.I.
Deposit date:2020-03-10
Release date:2020-04-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structural basis of serum albumin recognition by SL335, an antibody Fab extending the serum half-life of protein therapeutics.
Biochem.Biophys.Res.Commun., 526, 2020
5X14
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BU of 5x14 by Molmil
Crystal structure of Bacillus subtilis PadR in complex with ferulic acid
Descriptor: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, GLYCEROL, Transcriptional regulator
Authors:Park, S.C, Kwak, Y.M, Song, W.S, Hong, M, Yoon, S.I.
Deposit date:2017-01-24
Release date:2017-11-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural basis of effector and operator recognition by the phenolic acid-responsive transcriptional regulator PadR
Nucleic Acids Res., 45, 2017
5X13
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BU of 5x13 by Molmil
Crystal structure of Bacillus subtilis PadR in complex with p-coumaric acid
Descriptor: 4'-HYDROXYCINNAMIC ACID, GLYCEROL, Transcriptional regulator
Authors:Park, S.C, Kwak, Y.M, Song, W.S, Hong, M, Yoon, S.I.
Deposit date:2017-01-24
Release date:2017-11-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of effector and operator recognition by the phenolic acid-responsive transcriptional regulator PadR
Nucleic Acids Res., 45, 2017
5XLJ
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BU of 5xlj by Molmil
Crystal structure of the flagellar cap protein flid D2-D3 domains from serratia marcescens in Space group P432
Descriptor: CHLORIDE ION, Flagellar hook-associated protein 2, SODIUM ION
Authors:Cho, S.Y, Song, W.S, Hong, H.J, Yoon, S.I.
Deposit date:2017-05-10
Release date:2017-06-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Tetrameric structure of the flagellar cap protein FliD from Serratia marcescens.
Biochem. Biophys. Res. Commun., 489, 2017
5XLK
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BU of 5xlk by Molmil
Crystal structure of the flagellar cap protein FliD D2-D3 domains from Serratia marcescens in Space group I422
Descriptor: Flagellar hook-associated protein 2, ZINC ION
Authors:Cho, S.Y, Song, W.S, Hong, H.J, Yoon, S.I.
Deposit date:2017-05-10
Release date:2017-06-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Tetrameric structure of the flagellar cap protein FliD from Serratia marcescens.
Biochem. Biophys. Res. Commun., 489, 2017
8GR2
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BU of 8gr2 by Molmil
Crystal structure of the GDSL-family esterase CJ0610C from Campylobacter jejuni
Descriptor: DUF459 domain-containing protein, SULFATE ION
Authors:Ki, D.U, Song, W.S, Yoon, S.I.
Deposit date:2022-08-31
Release date:2022-11-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and biochemical analysis of the GDSL-family esterase CJ0610C from Campylobacter jejuni.
Biochem.Biophys.Res.Commun., 631, 2022
8H50
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BU of 8h50 by Molmil
Crystal structure of carboxyspermidine dehydrogenase from Helicobacter pylori in space group C2221
Descriptor: Saccharopine dehydrogenase
Authors:Ko, K.Y, Park, S.C, Cho, S.Y, Yoon, S.I.
Deposit date:2022-10-11
Release date:2022-11-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural analysis of carboxyspermidine dehydrogenase from Helicobacter pylori.
Biochem.Biophys.Res.Commun., 635, 2022
8H52
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Crystal structure of Helicobacter pylori carboxyspermidine dehydrogenase in complex with NADP
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Saccharopine dehydrogenase
Authors:Ko, K.Y, Park, S.C, Cho, S.Y, Yoon, S.I.
Deposit date:2022-10-11
Release date:2022-11-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural analysis of carboxyspermidine dehydrogenase from Helicobacter pylori.
Biochem.Biophys.Res.Commun., 635, 2022

 

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數據於2024-08-28公開中

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