3WE1
 
 | | Crystal structure of Dengue 4 Envelope protein domain III (ED3) | | 分子名称: | Envelope protein E | | 著者 | Elahi, M, Islam, M.M, Noguchi, K, Yohda, M, Toh, H, Kuroda, Y. | | 登録日 | 2013-06-27 | | 公開日 | 2014-01-22 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.278 Å) | | 主引用文献 | Computational prediction and experimental characterization of a "size switch type repacking" during the evolution of dengue envelope protein domain III (ED3).
Biochim.Biophys.Acta, 1844, 2014
|
|
3VQJ
 | | Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase | | 分子名称: | Carbonyl sulfide hydrolase, SODIUM ION, ZINC ION | | 著者 | Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M. | | 登録日 | 2012-03-24 | | 公開日 | 2013-02-27 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | | 主引用文献 | Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
|
|
3VRK
 | | Crystal Structutre of Thiobacillus thioparus THI115 Carbonyl Sulfide Hydrolase / Thiocyanate complex | | 分子名称: | Carbonyl sulfide hydrolase, SODIUM ION, THIOCYANATE ION, ... | | 著者 | Katayama, Y, Noguchi, K, Ogawa, T, Ohtaki, A, Odaka, M, Yohda, M. | | 登録日 | 2012-04-11 | | 公開日 | 2013-02-27 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | | 主引用文献 | Carbonyl Sulfide Hydrolase from Thiobacillus thioparus Strain THI115 Is One of the beta-Carbonic Anhydrase Family Enzymes
J.Am.Chem.Soc., 135, 2013
|
|
3VYG
 | | Crystal structure of Thiocyanate hydrolase mutant R136W | | 分子名称: | COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ... | | 著者 | Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M. | | 登録日 | 2012-09-25 | | 公開日 | 2013-11-13 | | 最終更新日 | 2023-12-06 | | 実験手法 | X-RAY DIFFRACTION (1.72 Å) | | 主引用文献 | Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
|
|
3VYH
 | | Crystal structure of aW116R mutant of nitrile hydratase from Pseudonocardia thermophilla | | 分子名称: | COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta | | 著者 | Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M. | | 登録日 | 2012-09-25 | | 公開日 | 2013-11-13 | | 最終更新日 | 2023-12-06 | | 実験手法 | X-RAY DIFFRACTION (1.63 Å) | | 主引用文献 | Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
|
|
3WVE
 | | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, before photo-activation | | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | | 登録日 | 2014-05-17 | | 公開日 | 2015-06-17 | | 最終更新日 | 2015-11-04 | | 実験手法 | X-RAY DIFFRACTION (1.57 Å) | | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
|
|
3WVD
 | | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 50 min | | 分子名称: | 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ... | | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | | 登録日 | 2014-05-17 | | 公開日 | 2015-06-17 | | 最終更新日 | 2015-11-04 | | 実験手法 | X-RAY DIFFRACTION (1.18 Å) | | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
|
|
3X24
 | | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 120 min | | 分子名称: | 2,2-dimethylpropanenitrile, FE (III) ION, MAGNESIUM ION, ... | | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | | 登録日 | 2014-12-10 | | 公開日 | 2016-01-27 | | 実験手法 | X-RAY DIFFRACTION (1.24 Å) | | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
|
|
3X28
 | | Crystal structure of Nitrile Hydratase mutant bR56K | | 分子名称: | CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ... | | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | | 登録日 | 2014-12-12 | | 公開日 | 2015-12-23 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Reaction intermediate of nitrile hydratase determined by time-resolved crystallography reveals the cysteine-sulfenic acid ligand to be a catalytic nucleophile
To be Published
|
|
3X26
 | | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 5 min | | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | | 登録日 | 2014-12-10 | | 公開日 | 2016-01-27 | | 実験手法 | X-RAY DIFFRACTION (1.34 Å) | | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
|
|
3X25
 | | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 700 min | | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, K, Yohda, M, Odaka, M. | | 登録日 | 2014-12-10 | | 公開日 | 2016-01-27 | | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
|
|
3X20
 | | Crystal structure of Nitrile Hydratase mutant bR56K complexed with Trimethylacetonitrile, photo-activated for 25 min | | 分子名称: | 2,2-dimethylpropanenitrile, CHLORIDE ION, FE (III) ION, ... | | 著者 | Yamanaka, Y, Hashimoto, K, Noguchi, N, Yohda, M, Odaka, M. | | 登録日 | 2014-12-03 | | 公開日 | 2016-01-27 | | 実験手法 | X-RAY DIFFRACTION (1.18 Å) | | 主引用文献 | Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile.
Angew.Chem.Int.Ed.Engl., 54, 2015
|
|
3AUG
 | | A simplified BPTI variant with poly Pro amino acid tag (C5P) at the C-terminus | | 分子名称: | Bovine pancreatic trypsin inhibitor, SULFATE ION | | 著者 | Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y. | | 登録日 | 2011-02-03 | | 公開日 | 2012-02-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.398 Å) | | 主引用文献 | Effect of amino acid mutations of protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
|
|
3AUD
 | | Simplified BPTI variant with poly Asn amino acid tag (C5N) at the C-terminus | | 分子名称: | Bovine pancreatic trypsin inhibitor | | 著者 | Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y. | | 登録日 | 2011-02-03 | | 公開日 | 2012-02-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.943 Å) | | 主引用文献 | Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
|
|
3AUB
 | | A simplified BPTI variant stabilized by the A14G and A38V substitutions | | 分子名称: | Bovine Pancreatic trypsin inhibitor | | 著者 | Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y. | | 登録日 | 2011-02-03 | | 公開日 | 2012-02-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1 Å) | | 主引用文献 | Effect of amino acid mutations of protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
|
|
3AUI
 | | A simplified BPTI variant with poly Glu amino acid tag (C3E) at the C-terminus | | 分子名称: | Bovine pancreatic trypsin inhibitor, SULFATE ION | | 著者 | Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y. | | 登録日 | 2011-02-03 | | 公開日 | 2012-02-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.851 Å) | | 主引用文献 | Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
|
|
3AUC
 | | A simplified BPTI variant with poly SER (C5S) amino acid tag at the c-terminus | | 分子名称: | Bovine pancreatic trypsin inhibitor, SULFATE ION | | 著者 | Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y. | | 登録日 | 2011-02-03 | | 公開日 | 2012-02-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.91 Å) | | 主引用文献 | Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
|
|
3AUH
 | | A simplified BPTI variant with poly Arg amino acid tag (C3R) at the C-terminus | | 分子名称: | Bovine pancreatic trypsin inhibitor, SULFATE ION | | 著者 | Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y. | | 登録日 | 2011-02-03 | | 公開日 | 2012-02-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | | 主引用文献 | Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
|
|
3AUE
 | | A simplified BPTI variant with poly His amino acid tag (C5H) at the C-terminus | | 分子名称: | Bovine pancreatic trypsin inhibitor, SULFATE ION | | 著者 | Islam, M.M, Kato, A, Khan, M.M.A, Noguchi, K, Yohda, M, Kidokoro, S.I, Kuroda, Y. | | 登録日 | 2011-02-03 | | 公開日 | 2012-02-08 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.28 Å) | | 主引用文献 | Effect of amino acid mutations on protein's solubility, function and structure characterized using short poly amino acid peptide tags
To be Published
|
|
2ZCF
 | | Mutational study on Alpha-Gln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771 | | 分子名称: | FE (III) ION, MAGNESIUM ION, Nitrile hydratase subunit alpha, ... | | 著者 | Takarada, H, Kawano, Y, Hashimoto, K, Nakayama, H, Ueda, S, Yohda, M, Kamiya, N, Dohmae, N, Maeda, M, Odaka, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2007-11-08 | | 公開日 | 2007-11-20 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.43 Å) | | 主引用文献 | Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
Biosci.Biotechnol.Biochem., 70, 2006
|
|
2ZJX
 | | Bovine pancreatic trypsin inhibitor (BPTI) containing only the [5,55] disulfide bond | | 分子名称: | Pancreatic trypsin inhibitor, SULFATE ION | | 著者 | Islam, M.M, Sohya, S, Noguchi, K, Yohda, M, Kuroda, Y. | | 登録日 | 2008-03-11 | | 公開日 | 2008-10-21 | | 最終更新日 | 2021-11-10 | | 実験手法 | X-RAY DIFFRACTION (1.09 Å) | | 主引用文献 | Crystal structure of an extensively simplified variant of bovine pancreatic trypsin inhibitor in which over one-third of the residues are alanines
Proc.Natl.Acad.Sci.Usa, 105, 2008
|
|
2ZVX
 | | Structure of a BPTI-[5,55] variant containing Gly/Val at the 14/38th positions | | 分子名称: | Pancreatic trypsin inhibitor, SULFATE ION | | 著者 | Islam, M.M, Sohya, S, Noguchi, K, Yohda, M, Kuroda, Y. | | 登録日 | 2008-11-24 | | 公開日 | 2009-10-13 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.09 Å) | | 主引用文献 | Thermodynamic and structural analysis of highly stabilized BPTIs by single and double mutations
Proteins, 77, 2009
|
|
2ZPE
 | | nitrosylated Fe-type nitrile hydratase with tert-butylisonitrile | | 分子名称: | FE (III) ION, MAGNESIUM ION, NITRIC OXIDE, ... | | 著者 | Hashimoto, K, Suzuki, H, Taniguchi, K, Noguchi, T, Yohda, M, Odaka, M. | | 登録日 | 2008-07-10 | | 公開日 | 2008-10-21 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | | 主引用文献 | Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile
J.Biol.Chem., 283, 2008
|
|
2ZZD
 | | Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme | | 分子名称: | COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ... | | 著者 | Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M. | | 登録日 | 2009-02-09 | | 公開日 | 2009-10-13 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | | 主引用文献 | Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J.Am.Chem.Soc., 131, 2009
|
|
3AEI
 | | Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1 | | 分子名称: | CHLORIDE ION, Prefoldin beta subunit 2, SULFATE ION | | 著者 | Ohtaki, A, Sugano, Y, Sato, T, Noguchi, K, Miyatake, H, Yohda, M. | | 登録日 | 2010-02-08 | | 公開日 | 2010-05-19 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Thermodynamic Characterization of the Interaction between Prefoldin and Group II Chaperonin
J.Mol.Biol., 399, 2010
|
|
