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PDB: 251 件
3CJC
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BU of 3cjc by Molmil
Actin dimer cross-linked by V. cholerae MARTX toxin and complexed with DNase I and Gelsolin-segment 1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
著者Sawaya, M.R, Kudryashov, D.S, Pashkov, I, Reisler, E, Yeates, T.O.
登録日2008-03-12
公開日2008-03-25
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.
Proc.Natl.Acad.Sci.USA, 105, 2008
4PPD
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BU of 4ppd by Molmil
PduA K26A, crystal form 2
分子名称: GLYCEROL, Propanediol utilization protein PduA, SULFATE ION
著者McNamara, D.E, Sawaya, M.R, Bobik, T.A, Yeates, T.O.
登録日2014-02-26
公開日2014-05-14
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the pdu microcompartment.
J.Mol.Biol., 426, 2014
3VDX
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BU of 3vdx by Molmil
Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains
分子名称: Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1
著者Lai, Y.-T, Cascio, D, Yeates, T.O.
登録日2012-01-06
公開日2012-06-20
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.002 Å)
主引用文献Structure of a 16-nm cage designed by using protein oligomers.
Science, 336, 2012
3MLI
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BU of 3mli by Molmil
2ouf-ds, a disulfide-linked dimer of Helicobacter pylori protein HP0242
分子名称: CALCIUM ION, Putative uncharacterized protein
著者King, N.P, Sawaya, M.R, Jacobitz, A.W, Yeates, T.O.
登録日2010-04-16
公開日2010-05-12
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure and folding of a designed knotted protein.
Proc.Natl.Acad.Sci.USA, 107, 2010
3WIS
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BU of 3wis by Molmil
Crystal structure of Burkholderia xenovorans DmrB in complex with FMN: A Cubic Protein Cage for Redox Transfer
分子名称: FLAVIN MONONUCLEOTIDE, Putative dihydromethanopterin reductase (AfpA), SULFATE ION
著者Bobik, T.A, Cascio, D, Jorda, J, McNamara, D.E, Bustos, C, Wang, T.C, Rasche, M.E, Yeates, T.O.
登録日2013-09-25
公開日2014-02-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献Structure of dihydromethanopterin reductase, a cubic protein cage for redox transfer
J.Biol.Chem., 289, 2014
2G13
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BU of 2g13 by Molmil
CsoS1A with sulfate ion
分子名称: Major carboxysome shell protein 1A, SULFATE ION
著者Tsai, Y, Sawaya, M.R, Cannon, G.C, Williams, E.B, Kerfeld, C.A, Yeates, T.O.
登録日2006-02-13
公開日2007-02-27
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Structural Analysis of CsoS1A and the Protein Shell of the Halothiobacillus neapolitanus Carboxysome.
Plos Biol., 5, 2007
1MY6
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BU of 1my6 by Molmil
The 1.6 A Structure of Fe-Superoxide Dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus : Correlation of EPR and Structural Characteristics
分子名称: FE (III) ION, Iron (III) Superoxide Dismutase
著者Yoshida, S.M, Cascio, D, Sawaya, M.R, Yeates, T.O, Kerfeld, C.A.
登録日2002-10-03
公開日2003-07-29
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The 1.6 A resolution structure of Fe-superoxide dismutase from the thermophilic cyanobacterium Thermosynechococcus elongatus.
J.BIOL.INORG.CHEM., 8, 2003
1MZ4
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BU of 1mz4 by Molmil
Crystal Structure of Cytochrome c550 from Thermosynechococcus elongatus
分子名称: BICARBONATE ION, GLYCEROL, HEME C, ...
著者Kerfeld, C.A, Sawaya, M.R, Bottin, H, Tran, K.T, Sugiura, M, Kirilovsky, D, Krogmann, D, Yeates, T.O, Boussac, A.
登録日2002-10-05
公開日2003-09-23
最終更新日2021-03-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and EPR characterization of the soluble form of cytochrome c-550 and of the psbV2 gene product from the cyanobacterium Thermosynechococcus elongatus.
Plant Cell.Physiol., 44, 2003
6XPI
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BU of 6xpi by Molmil
CutR flat hexamer, form 1
分子名称: Ethanolamine utilization protein EutS
著者Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O.
登録日2020-07-08
公開日2020-07-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization.
Protein Sci., 29, 2020
6XPJ
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BU of 6xpj by Molmil
CutR flat hexamer, form 2
分子名称: Ethanolamine utilization protein EutS, SULFATE ION
著者Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O.
登録日2020-07-08
公開日2020-07-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization.
Protein Sci., 29, 2020
6X1I
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BU of 6x1i by Molmil
Two-Component D3 Assembly Constructed by Fusing Symmetric Oligomers to Coiled Coils
分子名称: Cob_adeno_trans domain-containing protein PH0671 fused to a coiled coil, SnoaL-like Protein fused to a coiled coil
著者Laniado, J, Yeates, T.O, Sawaya, M.R.
登録日2020-05-18
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (4.32 Å)
主引用文献Geometric Lessons and Design Strategies for Nanoscale Protein Cages.
Acs Nano, 15, 2021
2B5O
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BU of 2b5o by Molmil
ferredoxin-NADP reductase
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase, SULFATE ION
著者Sawaya, M.R, Kerfeld, C.A, Gomez-Lojero, C, Krogmann, D, Bryant, D.A, Yeates, T.O.
登録日2005-09-29
公開日2005-10-11
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.499 Å)
主引用文献Crystal Structure of Ferredoxin-NADP reductase from Synechococcus sp. (PCC 7002)
To be Published
2EWH
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BU of 2ewh by Molmil
Carboxysome protein CsoS1A from Halothiobacillus neapolitanus
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Major carboxysome shell protein 1A
著者Tsai, Y, Sawaya, M.R, Kerfeld, C.A, Yeates, T.O.
登録日2005-11-03
公開日2006-11-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural Analysis of CsoS1A and the Protein Shell of the Halothiobacillus neapolitanus Carboxysome.
Plos Biol., 5, 2007
4ZSV
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BU of 4zsv by Molmil
Structure of a fusion protein with a helix linker, 2ARH-3-3KAW-1.0
分子名称: Uncharacterized protein
著者Lai, Y.-T, Yeates, T.O.
登録日2015-05-14
公開日2015-08-19
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (4.2 Å)
主引用文献On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.
Protein Eng.Des.Sel., 28, 2015
4ZSZ
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BU of 4zsz by Molmil
Structure of a fusion protein with a helix linker, 2ARH-3-3KAW-3.0
分子名称: Uncharacterized Fusion Protein
著者Lai, Y.-T, Yeates, T.O.
登録日2015-05-14
公開日2015-08-19
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (4.251 Å)
主引用文献On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker.
Protein Eng.Des.Sel., 28, 2015
2RCF
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BU of 2rcf by Molmil
Carboxysome Shell protein, OrfA from H. Neapolitanus
分子名称: CHLORIDE ION, GLYCEROL, Unidentified carboxysome polypeptide
著者Kerfeld, C.A, Sawaya, M.R, Yeates, T.O.
登録日2007-09-19
公開日2008-04-08
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Atomic-level models of the bacterial carboxysome shell.
Science, 319, 2008
6XPH
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BU of 6xph by Molmil
CutR dimer with domain swap
分子名称: Ethanolamine utilization protein EutS, GLYCEROL, POTASSIUM ION, ...
著者Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O, Nie, M.
登録日2020-07-08
公開日2020-07-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization.
Protein Sci., 29, 2020
2RIF
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BU of 2rif by Molmil
CBS domain protein PAE2072 from Pyrobaculum aerophilum complexed with AMP
分子名称: ADENOSINE MONOPHOSPHATE, CESIUM ION, Conserved protein with 2 CBS domains
著者Lee, T.M, King, N.P, Sawaya, M.R, Cascio, D, Yeates, T.O.
登録日2007-10-10
公開日2008-06-17
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structures and Functional Implications of an AMP-Binding Cystathionine beta-Synthase Domain Protein from a Hyperthermophilic Archaeon.
J.Mol.Biol., 380, 2008
6XPK
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BU of 6xpk by Molmil
CutR Screw, form 1 with 41.9 angstrom pitch
分子名称: Ethanolamine utilization protein EutS
著者Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O.
登録日2020-07-08
公開日2020-07-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization.
Protein Sci., 29, 2020
6XPL
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BU of 6xpl by Molmil
CutR Screw, form 2 with 33.8 angstrom pitch
分子名称: Ethanolamine utilization protein EutS
著者Ochoa, J.M, Sawaya, M.R, Nguyen, V.N, Duilio, C, Yeates, T.O.
登録日2020-07-08
公開日2020-07-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Symmetry breaking and structural polymorphism in a bacterial microcompartment shell protein for choline utilization.
Protein Sci., 29, 2020
2RIH
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BU of 2rih by Molmil
CBS domain protein PAE2072 from Pyrobaculum aerophilum
分子名称: ACETIC ACID, Conserved protein with 2 CBS domains, SULFATE ION
著者Lee, T.M, King, N.P, Sawaya, M.R, Cascio, D, Yeates, T.O.
登録日2007-10-10
公開日2008-06-17
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures and Functional Implications of an AMP-Binding Cystathionine beta-Synthase Domain Protein from a Hyperthermophilic Archaeon
J.Mol.Biol., 380, 2008
5UI2
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BU of 5ui2 by Molmil
CRYSTAL STRUCTURE OF ORANGE CAROTENOID PROTEIN
分子名称: (3'R)-3'-hydroxy-beta,beta-caroten-4-one, CHLORIDE ION, Orange carotenoid-binding protein, ...
著者KERFELD, C.A, SAWAYA, M.R, VISHNU, B, KROGMANN, D, YEATES, T.O.
登録日2017-01-12
公開日2017-01-25
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The crystal structure of a cyanobacterial water-soluble carotenoid binding protein.
Structure, 11, 2003
5IM5
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BU of 5im5 by Molmil
Crystal structure of designed two-component self-assembling icosahedral cage I53-40
分子名称: Designed Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase, Designed Riboflavin synthase
著者Liu, Y.A, Cascio, D, Sawaya, M.R, Bale, J.B, Collazo, M.J, Thomas, C, Sheffler, W, King, N.P, Baker, D, Yeates, T.O.
登録日2016-03-05
公開日2016-07-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.699 Å)
主引用文献Accurate design of megadalton-scale two-component icosahedral protein complexes.
Science, 353, 2016
8UJA
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BU of 8uja by Molmil
T33-fn10 - Designed Tetrahedral Protein Cage Using Fragment-based Hydrogen Bond Networks
分子名称: T33-fn10: engineered DrsE like sulfur reductase, T33-fn10: engineered enoyl-CoA hydratase/isomerase
著者Meador, K, Sawaya, M.R, Yeates, T.O.
登録日2023-10-11
公開日2024-03-06
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (6 Å)
主引用文献A suite of designed protein cages using machine learning and protein fragment-based protocols.
Structure, 32, 2024
1F1F
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BU of 1f1f by Molmil
CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM ARTHROSPIRA MAXIMA
分子名称: CYTOCHROME C6, HEME C
著者Kerfeld, C.A, Serag, A.A, Sawaya, M.R, Krogmann, D.W, Yeates, T.O.
登録日2000-05-18
公開日2001-08-08
最終更新日2021-03-03
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structures of cytochrome c-549 and cytochrome c6 from the cyanobacterium Arthrospira maxima.
Biochemistry, 40, 2001

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