6AB2
| Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oClZLys | 分子名称: | (2S)-2-azanyl-6-[(2-chlorophenyl)methoxycarbonylamino]hexanoic acid, 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, ... | 著者 | Yanagisawa, T, Kuratani, M, Yokoyama, S. | 登録日 | 2018-07-19 | 公開日 | 2019-04-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol, 26, 2019
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6AAQ
| Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with BCNLys | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, N6-({[(1R,8S,9s)-bicyclo[6.1.0]non-4-yn-9-yl]methoxy}carbonyl)-L-lysine, ... | 著者 | Yanagisawa, T, Kuratani, M, Yokoyama, S. | 登録日 | 2018-07-18 | 公開日 | 2019-04-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.551 Å) | 主引用文献 | Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol, 26, 2019
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6AAN
| Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mEtZLys | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ... | 著者 | Yanagisawa, T, Kuratani, M, Yokoyama, S. | 登録日 | 2018-07-18 | 公開日 | 2019-04-17 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.51 Å) | 主引用文献 | Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase. Cell Chem Biol, 26, 2019
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2E3C
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2EL9
| Crystal structure of E.coli Histidyl-tRNA synthetase complexed with a histidyl-adenylate analogue | 分子名称: | 5'-O-[(L-HISTIDYLAMINO)SULFONYL]ADENOSINE, Histidyl-tRNA synthetase | 著者 | Yanagisawa, T, Si, S.Y, Matsuno, M, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2007-03-27 | 公開日 | 2008-03-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal structure of E.coli Histidyl-tRNA synthetase complexed with a histidyl-adenylate analogue To be published
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3GH5
| Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with GlcNAc | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, beta-hexosaminidase | 著者 | Sumida, T, Ishii, R, Yanagisawa, T, Yokoyama, S, Ito, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-03-03 | 公開日 | 2009-07-07 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids J.Mol.Biol., 392, 2009
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3GH7
| Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with GalNAc | 分子名称: | 2-acetamido-2-deoxy-beta-D-galactopyranose, SULFATE ION, beta-hexosaminidase | 著者 | Sumida, T, Ishii, R, Yanagisawa, T, Yokoyama, S, Ito, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-03-03 | 公開日 | 2009-07-07 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids J.Mol.Biol., 392, 2009
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3GH4
| Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 | 分子名称: | ACETIC ACID, SULFATE ION, beta-hexosaminidase | 著者 | Sumida, T, Ishii, R, Yanagisawa, T, Yokoyama, S, Ito, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-03-03 | 公開日 | 2009-07-07 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Molecular cloning and crystal structural analysis of a novel beta-N-acetylhexosaminidase from Paenibacillus sp. TS12 capable of degrading glycosphingolipids J.Mol.Biol., 392, 2009
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3A5Z
| Crystal structure of Escherichia coli GenX in complex with elongation factor P | 分子名称: | 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Elongation factor P, Putative lysyl-tRNA synthetase | 著者 | Sumida, T, Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-08-17 | 公開日 | 2010-08-25 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P. Nat.Struct.Mol.Biol., 17, 2010
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3A5Y
| Crystal structure of GenX from Escherichia coli in complex with lysyladenylate analog | 分子名称: | 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Putative lysyl-tRNA synthetase | 著者 | Sumida, T, Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2009-08-17 | 公開日 | 2010-08-25 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P. Nat.Struct.Mol.Biol., 17, 2010
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5WXJ
| Apo EarP | 分子名称: | BETA-MERCAPTOETHANOL, EarP, GLYCEROL, ... | 著者 | Sengoku, T, Yokoyama, S, Yanagisawa, T. | 登録日 | 2017-01-07 | 公開日 | 2018-02-28 | 最終更新日 | 2018-04-04 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP Nat. Chem. Biol., 14, 2018
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5WXK
| EarP bound with domain I of EF-P | 分子名称: | BETA-MERCAPTOETHANOL, EarP, Elongation factor P, ... | 著者 | Sengoku, T, Yokoyama, S, Yanagisawa, T. | 登録日 | 2017-01-07 | 公開日 | 2018-02-28 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.801 Å) | 主引用文献 | Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP Nat. Chem. Biol., 14, 2018
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5WXI
| EarP bound with dTDP-rhamnose (soaked) | 分子名称: | 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE, BETA-MERCAPTOETHANOL, EarP, ... | 著者 | Sengoku, T, Yokoyama, S, Yanagisawa, T. | 登録日 | 2017-01-07 | 公開日 | 2018-02-28 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural basis of protein arginine rhamnosylation by glycosyltransferase EarP Nat. Chem. Biol., 14, 2018
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5XVR
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2ZUE
| Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg) and an ATP analog (ANP) | 分子名称: | Arginyl-tRNA synthetase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... | 著者 | Konno, M, Sumida, T, Uchikawa, E, Mori, Y, Yanagisawa, T, Sekine, S, Yokoyama, S. | 登録日 | 2008-10-16 | 公開日 | 2009-08-18 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP) Febs J., 276, 2009
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2ZUF
| Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg) | 分子名称: | Arginyl-tRNA synthetase, tRNA-Arg | 著者 | Konno, M, Sumida, T, Uchikawa, E, Mori, Y, Yanagisawa, T, Sekine, S, Yokoyama, S. | 登録日 | 2008-10-16 | 公開日 | 2009-08-18 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP) Febs J., 276, 2009
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5XHF
| Crystal structure of Trastuzumab Fab fragment bearing p-azido-L-phenylalanine | 分子名称: | polypeptide (H chain), polypeptide (L chain) | 著者 | Kuratani, M, Yanagisawa, T, Sakamoto, K, Yokoyama, S. | 登録日 | 2017-04-20 | 公開日 | 2017-12-20 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.205 Å) | 主引用文献 | Extensive Survey of Antibody Invariant Positions for Efficient Chemical Conjugation Using Expanded Genetic Codes. Bioconjug. Chem., 28, 2017
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5XHG
| Crystal structure of Trastuzumab Fab fragment bearing Ne-(o-azidobenzyloxycarbonyl)-L-lysine | 分子名称: | (2-azidophenyl)methyl hydrogen carbonate, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ... | 著者 | Kuratani, M, Yanagisawa, T, Sakamoto, K, Yokoyama, S. | 登録日 | 2017-04-20 | 公開日 | 2017-12-20 | 最終更新日 | 2019-12-25 | 実験手法 | X-RAY DIFFRACTION (1.76 Å) | 主引用文献 | Extensive Survey of Antibody Invariant Positions for Efficient Chemical Conjugation Using Expanded Genetic Codes. Bioconjug. Chem., 28, 2017
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2CYC
| Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Pyrococcus horikoshii | 分子名称: | TYROSINE, tyrosyl-tRNA synthetase | 著者 | Kuratani, M, Sakai, H, Takahashi, M, Yanagisawa, T, Kobayashi, T, Sakamoto, K, Terada, T, Shirouzu, M, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-07-06 | 公開日 | 2005-11-22 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal Structures of Tyrosyl-tRNA Synthetases from Archaea J.Mol.Biol., 355, 2006
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2CYA
| Crystal structure of tyrosyl-tRNA synthetase from Aeropyrum pernix | 分子名称: | SULFATE ION, Tyrosyl-tRNA synthetase | 著者 | Kuratani, M, Sakai, H, Takahashi, M, Yanagisawa, T, Kobayashi, T, Murayama, K, Chen, L, Liu, Z.J, Wang, B.C, Kuroishi, C, Kuramitsu, S, Terada, T, Bessho, Y, Shirouzu, M, Sekine, S.I, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-07-06 | 公開日 | 2005-11-22 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal Structures of Tyrosyl-tRNA Synthetases from Archaea J.Mol.Biol., 355, 2005
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2CYB
| Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Archaeoglobus fulgidus | 分子名称: | TYROSINE, Tyrosyl-tRNA synthetase | 著者 | Kuratani, M, Sakai, H, Takahashi, M, Yanagisawa, T, Kobayashi, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2005-07-06 | 公開日 | 2005-11-22 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structures of Tyrosyl-tRNA Synthetases from Archaea J.Mol.Biol., 355, 2006
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