2RT8
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![BU of 2rt8 by Molmil](/molmil-images/mine/2rt8) | Structure of metallo-dna in solution | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION | Authors: | Yamaguchi, H, Sebera, J, Kondo, J, Oda, S, Komuro, T, Kawamura, T, Dairaku, T, Kondo, Y, Okamoto, I, Ono, A, Burda, J.V, Kojima, C, Sychrovsky, V, Tanaka, Y. | Deposit date: | 2013-06-18 | Release date: | 2014-03-05 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | The structure of metallo-DNA with consecutive thymine-HgII-thymine base pairs explains positive entropy for the metallo base pair formation. Nucleic Acids Res., 42, 2014
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1GLV
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3LCK
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6ACF
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![BU of 6acf by Molmil](/molmil-images/mine/6acf) | structure of leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM | Descriptor: | Leucine dehydrogenase | Authors: | Yamaguchi, H, Kamegawa, A, Nakata, K, Kashiwagi, T, Mizukoshi, T, Fujiyoshi, Y, Tani, K. | Deposit date: | 2018-07-26 | Release date: | 2018-12-26 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy J. Struct. Biol., 205, 2019
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6ACH
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![BU of 6ach by Molmil](/molmil-images/mine/6ach) | Structure of NAD+-bound leucine dehydrogenase from Geobacillus stearothermophilus by cryo-EM | Descriptor: | Leucine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Yamaguchi, H, Kamegawa, A, Nakata, K, Kashiwagi, T, Mizukoshi, T, Fujiyoshi, Y, Tani, K. | Deposit date: | 2018-07-26 | Release date: | 2018-12-26 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy J. Struct. Biol., 205, 2019
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8JPW
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![BU of 8jpw by Molmil](/molmil-images/mine/8jpw) | Crystal Structure of Single-chain L-Glutamate Oxidase Mutant from Streptomyces sp. X-119-6 | Descriptor: | 2-OXOGLUTARIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, L-glutamate oxidase, ... | Authors: | Yamaguchi, H, Takahashi, K, Tatsumi, M, Tagami, U, Mizukoshi, T, Miyano, H, Sugiki, M. | Deposit date: | 2023-06-13 | Release date: | 2023-08-09 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.66 Å) | Cite: | Development of a novel single-chain l-glutamate oxidase from Streptomyces sp. X-119-6 by inserting flexible linkers. Enzyme.Microb.Technol., 170, 2023
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8JT7
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![BU of 8jt7 by Molmil](/molmil-images/mine/8jt7) | Structure of arginine oxidase from Pseudomonas sp. TRU 7192 | Descriptor: | Amine oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE | Authors: | Yamaguchi, H, Numoto, N, Suzuki, H, Nishikawa, K, Kamegawa, A, Takahashi, K, Sugiki, M, Fujiyoshi, Y. | Deposit date: | 2023-06-21 | Release date: | 2024-06-26 | Method: | ELECTRON MICROSCOPY (2.34 Å) | Cite: | Structural basis of arginine oxidase from Pseudomonas sp. TRU 7192 To Be Published
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2H9V
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![BU of 2h9v by Molmil](/molmil-images/mine/2h9v) | Structural basis for induced-fit binding of Rho-kinase to the inhibitor Y27632 | Descriptor: | (R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE, Rho-associated protein kinase 2 | Authors: | Yamaguchi, H, Miwa, Y, Kasa, M, Kitano, K, Amano, M, Kaibuchi, K, Hakoshima, T. | Deposit date: | 2006-06-12 | Release date: | 2006-12-05 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Structural basis for induced-fit binding of Rho-kinase to the inhibitor Y-27632 J.Biochem.(Tokyo), 140, 2006
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1X1D
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![BU of 1x1d by Molmil](/molmil-images/mine/1x1d) | Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and Zn-bacteriopheophorbide d | Descriptor: | CrtF-related protein, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ... | Authors: | Yamaguchi, H, Wada, K, Fukuyama, K. | Deposit date: | 2005-04-04 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol., 360, 2006
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1X1B
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![BU of 1x1b by Molmil](/molmil-images/mine/1x1b) | Crystal structure of BchU complexed with S-adenosyl-L-homocysteine | Descriptor: | CrtF-related protein, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ... | Authors: | Yamaguchi, H, Wada, K, Fukuyama, K. | Deposit date: | 2005-04-03 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol., 360, 2006
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1X19
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![BU of 1x19 by Molmil](/molmil-images/mine/1x19) | Crystal structure of BchU involved in bacteriochlorophyll c biosynthesis | Descriptor: | CrtF-related protein, SULFATE ION | Authors: | Yamaguchi, H, Wada, K, Fukuyama, K. | Deposit date: | 2005-04-02 | Release date: | 2006-07-18 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.27 Å) | Cite: | Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol., 360, 2006
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1X1A
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![BU of 1x1a by Molmil](/molmil-images/mine/1x1a) | Crystal structure of BchU complexed with S-adenosyl-L-methionine | Descriptor: | CrtF-related protein, GLYCEROL, S-ADENOSYLMETHIONINE, ... | Authors: | Yamaguchi, H, Wada, K, Fukuyama, K. | Deposit date: | 2005-04-03 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol., 360, 2006
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1X1C
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![BU of 1x1c by Molmil](/molmil-images/mine/1x1c) | Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and Zn2+ | Descriptor: | CrtF-related protein, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ... | Authors: | Yamaguchi, H, Wada, K, Fukuyama, K. | Deposit date: | 2005-04-03 | Release date: | 2006-07-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.85 Å) | Cite: | Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol., 360, 2006
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1IAJ
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![BU of 1iaj by Molmil](/molmil-images/mine/1iaj) | CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (APO) | Descriptor: | TRANSIENT RECEPTOR POTENTIAL-RELATED PROTEIN, ZINC ION | Authors: | Yamaguchi, H, Matsushita, M, Nairn, A.C, Kuriyan, J. | Deposit date: | 2001-03-22 | Release date: | 2001-06-06 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity. Mol.Cell, 7, 2001
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1IA9
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![BU of 1ia9 by Molmil](/molmil-images/mine/1ia9) | CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (AMPPNP COMPLEX) | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, TRANSIENT RECEPTOR POTENTIAL-RELATED PROTEIN, ... | Authors: | Yamaguchi, H, Matsushita, M, Nairn, A.C, Kuriyan, J. | Deposit date: | 2001-03-22 | Release date: | 2001-06-06 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity. Mol.Cell, 7, 2001
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1IAH
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![BU of 1iah by Molmil](/molmil-images/mine/1iah) | CRYSTAL STRUCTURE OF THE ATYPICAL PROTEIN KINASE DOMAIN OF A TRP CA-CHANNEL, CHAK (ADP-MG COMPLEX) | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Yamaguchi, H, Matsushita, M, Nairn, A.C, Kuriyan, J. | Deposit date: | 2001-03-22 | Release date: | 2001-06-06 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of the atypical protein kinase domain of a TRP channel with phosphotransferase activity. Mol.Cell, 7, 2001
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2F2U
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![BU of 2f2u by Molmil](/molmil-images/mine/2f2u) | crystal structure of the Rho-kinase kinase domain | Descriptor: | 5-(1,4-DIAZEPAN-1-SULFONYL)ISOQUINOLINE, Rho-associated protein kinase 2 | Authors: | Yamaguchi, H, Hakoshima, T. | Deposit date: | 2005-11-18 | Release date: | 2006-04-25 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Molecular mechanism for the regulation of rho-kinase by dimerization and its inhibition by fasudil Structure, 14, 2006
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5ZBC
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![BU of 5zbc by Molmil](/molmil-images/mine/5zbc) | Crystal structure of Se-Met tryptophan oxidase (C395A mutant) from Chromobacterium violaceum | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA | Authors: | Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y. | Deposit date: | 2018-02-11 | Release date: | 2018-12-19 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis. J. Biochem., 164, 2018
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5ZBD
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![BU of 5zbd by Molmil](/molmil-images/mine/5zbd) | Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA, TRYPTOPHAN | Authors: | Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y. | Deposit date: | 2018-02-11 | Release date: | 2018-12-19 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis. J. Biochem., 164, 2018
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1GSH
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![BU of 1gsh by Molmil](/molmil-images/mine/1gsh) | STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5 | Descriptor: | GLUTATHIONE BIOSYNTHETIC LIGASE | Authors: | Matsuda, K, Kato, H, Yamaguchi, H, Nishioka, T, Katsube, Y, Oda, J. | Deposit date: | 1995-05-16 | Release date: | 1996-07-11 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins. Protein Eng., 9, 1996
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8T8A
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6LXV
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![BU of 6lxv by Molmil](/molmil-images/mine/6lxv) | Cryo-EM structure of phosphoketolase from Bifidobacterium longum | Descriptor: | CALCIUM ION, Phosphoketolase, THIAMINE DIPHOSPHATE | Authors: | Nakata, K, Miyazaki, N, Yamaguchi, H, Hirose, M, Miyano, H, Mizukoshi, T, Kashiwagi, T, Iwasaki, K. | Deposit date: | 2020-02-12 | Release date: | 2021-02-17 | Last modified: | 2024-05-29 | Method: | ELECTRON MICROSCOPY (2.1 Å) | Cite: | High-resolution structure of phosphoketolase from Bifidobacterium longum determined by cryo-EM single-particle analysis. J.Struct.Biol., 214, 2022
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2GLT
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![BU of 2glt by Molmil](/molmil-images/mine/2glt) | STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0. | Descriptor: | GLUTATHIONE BIOSYNTHETIC LIGASE | Authors: | Matsuda, K, Yamaguchi, H, Kato, H, Nishioka, T, Katsube, Y, Oda, J. | Deposit date: | 1995-05-16 | Release date: | 1995-07-31 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins. Protein Eng., 9, 1996
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1OCC
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![BU of 1occ by Molmil](/molmil-images/mine/1occ) | STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE | Descriptor: | COPPER (II) ION, CYTOCHROME C OXIDASE, HEME-A, ... | Authors: | Tsukihara, T, Aoyama, H, Yamashita, E, Tomizaki, T, Yamaguchi, H, Shinzawa-Itoh, K, Nakashima, R, Yaono, R, Yoshikawa, S. | Deposit date: | 1996-04-18 | Release date: | 1996-12-07 | Last modified: | 2018-03-21 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A. Science, 272, 1996
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3VOB
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![BU of 3vob by Molmil](/molmil-images/mine/3vob) | Staphylococcus aureus FtsZ with PC190723 | Descriptor: | 3-[(6-chloro[1,3]thiazolo[5,4-b]pyridin-2-yl)methoxy]-2,6-difluorobenzamide, CALCIUM ION, Cell division protein FtsZ, ... | Authors: | Yamane, J, Matsui, T, Mogi, N, Yamaguchi, H, Takemoto, H, Yao, M, Tanaka, I. | Deposit date: | 2012-01-20 | Release date: | 2012-08-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.703 Å) | Cite: | Structural reorganization of the bacterial cell-division protein FtsZ from Staphylococcus aureus Acta Crystallogr.,Sect.D, 68, 2012
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