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PDB: 410 results

8OLG
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BU of 8olg by Molmil
DI2 Abeta fibril from tg-SwDI mouse
Descriptor: Amyloid-beta protein 42
Authors:Zielinski, M, Peralta Reyes, F.S, Gremer, L, Schemmert, S, Frieg, B, Willuweit, A, Donner, L, Elvers, M, Nilsson, L.N.G, Syvanen, S, Sehlin, D, Ingelsson, M, Willbold, D, Schroeder, G.F.
Deposit date:2023-03-30
Release date:2023-11-29
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Cryo-EM of A beta fibrils from mouse models find tg-APP ArcSwe fibrils resemble those found in patients with sporadic Alzheimer's disease.
Nat.Neurosci., 26, 2023
5D1M
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BU of 5d1m by Molmil
Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7 (P199A)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase RNF25, ...
Authors:Liang, Y.-H, Li, S, Weissman, A.M, Ji, X.
Deposit date:2015-08-04
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B.
J.Biol.Chem., 290, 2015
5ICQ
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Methanobactin periplasmic binding protein
Descriptor: Methylocystis parvus OBBP MbnE, SULFATE ION
Authors:Dassama, L.M.K, Rosenzweig, A.C.
Deposit date:2016-02-23
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Methanobactin transport machinery.
Proc.Natl.Acad.Sci.USA, 113, 2016
6RH3
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BU of 6rh3 by Molmil
Cryo-EM structure of E. coli RNA polymerase elongation complex bound to CTP substrate
Descriptor: CYTIDINE-5'-TRIPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Abdelkareem, M, Saint-Andre, C, Takacs, M, Papai, G, Crucifix, C, Guo, X, Ortiz, J, Weixlbaumer, A.
Deposit date:2019-04-18
Release date:2019-07-03
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation.
Mol.Cell, 75, 2019
5WBC
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BU of 5wbc by Molmil
Designed Artificial Cupredoxins - WT
Descriptor: ACETATE ION, GLYCEROL, Streptavidin, ...
Authors:Mann, S.I, Heinisch, T, Weitz, A.C, Hendrich, M.R, Ward, T.R, Borovik, A.S.
Deposit date:2017-06-28
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Modular Artificial Cupredoxins.
J. Am. Chem. Soc., 138, 2016
5WDI
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BU of 5wdi by Molmil
Structure of Human Sts-2 histidine phosphatase domain
Descriptor: SULFATE ION, Ubiquitin-associated and SH3 domain-containing protein A
Authors:Zhou, W, Yin, Y, Weinheimer, A.W, Kaur, N, Carpino, N, French, J.B.
Deposit date:2017-07-05
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Structural and Functional Characterization of the Histidine Phosphatase Domains of Human Sts-1 and Sts-2.
Biochemistry, 56, 2017
5W5G
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BU of 5w5g by Molmil
Structure of Human Sts-1 histidine phosphatase domain
Descriptor: Ubiquitin-associated and SH3 domain-containing protein B
Authors:Zhou, W, Yin, Y, Weinheimer, A.W, Kaur, N, Carpino, N, French, J.B.
Deposit date:2017-06-15
Release date:2017-08-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structural and Functional Characterization of the Histidine Phosphatase Domains of Human Sts-1 and Sts-2.
Biochemistry, 56, 2017
8OYI
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particulate methane monooxygenase with 2,2,2-trifluoroethanol bound
Descriptor: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-dihexanoyl-sn-glycero-3-phosphocholine, Ammonia monooxygenase/methane monooxygenase, ...
Authors:Tucci, F.J, Rosenzweig, A.C.
Deposit date:2023-05-04
Release date:2023-11-08
Last modified:2024-01-17
Method:ELECTRON MICROSCOPY (2.19 Å)
Cite:Product analog binding identifies the copper active site of particulate methane monooxygenase.
Nat Catal, 6, 2023
6FLQ
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BU of 6flq by Molmil
CryoEM structure of E.coli RNA polymerase paused elongation complex bound to NusA
Descriptor: DNA (31-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Guo, X, Weixlbaumer, A.
Deposit date:2018-01-26
Release date:2018-03-21
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural Basis for NusA Stabilized Transcriptional Pausing.
Mol. Cell, 69, 2018
6HAM
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BU of 6ham by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
6HAP
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BU of 6hap by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
6CPD
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BU of 6cpd by Molmil
Crystal structure of PmoD soluble domain from Methylocystis sp. ATCC 49242 (Rockwell)
Descriptor: COPPER (I) ION, PmoD, SULFATE ION
Authors:Fisher, O.S, Rosenzweig, A.C.
Deposit date:2018-03-13
Release date:2018-10-31
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria.
Nat Commun, 9, 2018
6DAM
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BU of 6dam by Molmil
Crystal structure of lanthanide-dependent methanol dehydrogenase XoxF from Methylomicrobium buryatense 5G
Descriptor: LANTHANUM (III) ION, Lanthanide-dependent methanol dehydrogenase XoxF, PYRROLOQUINOLINE QUINONE, ...
Authors:Deng, Y, Ro, S.Y, Rosenzweig, A.C.
Deposit date:2018-05-01
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and function of the lanthanide-dependent methanol dehydrogenase XoxF from the methanotroph Methylomicrobium buryatense 5GB1C.
J. Biol. Inorg. Chem., 23, 2018
4YDX
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BU of 4ydx by Molmil
Crystal structure of cisplatin bound to a human copper chaperone (monomer) - new refinement
Descriptor: 3,3',3''-phosphanetriyltripropanoic acid, Copper transport protein ATOX1, PLATINUM (II) ION, ...
Authors:Shabalin, I.G, Boal, A.K, Dauter, Z, Jaskolski, M, Minor, W, Rosenzweig, A.C, Wlodawer, A.
Deposit date:2015-02-23
Release date:2015-03-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin.
Acta Crystallogr.,Sect.D, 71, 2015
6E1C
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BU of 6e1c by Molmil
Crystal structure of a MauG-like protein associated with microbial copper homeostasis
Descriptor: CALCIUM ION, Di-heme enzyme, HEME C
Authors:Dassama, L.M.K, Rosenzweig, A.C.
Deposit date:2018-07-09
Release date:2019-07-17
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.617 Å)
Cite:MbnH is a diheme MauG-like protein associated with microbial copper homeostasis.
J.Biol.Chem., 294, 2019
1WQ1
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BU of 1wq1 by Molmil
RAS-RASGAP COMPLEX
Descriptor: ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, H-RAS, ...
Authors:Scheffzek, K, Ahmadian, M.R, Kabsch, W, Wiesmueller, L, Lautwein, A, Schmitz, F, Wittinghofer, A.
Deposit date:1997-07-03
Release date:1998-07-15
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Ras-RasGAP complex: structural basis for GTPase activation and its loss in oncogenic Ras mutants.
Science, 277, 1997
6FOG
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BU of 6fog by Molmil
X-ray structure of homo sapiens Fumarylacetoacetate hydrolase domain containing protein 1 (FAHD1) in complex with inhibitor oxalate at 1.94A resolution.
Descriptor: Acylpyruvase FAHD1, mitochondrial, CHLORIDE ION, ...
Authors:Naschberger, A, Weiss, A.K.H.
Deposit date:2018-02-07
Release date:2018-11-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural basis for the bi-functionality of human oxaloacetate decarboxylase FAHD1.
Biochem. J., 475, 2018
6FOH
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BU of 6foh by Molmil
X-ray structure of homo sapiens Fumarylacetoacetate hydrolase domain containing protein 1 (FAHD1) at 1.56A resolution.
Descriptor: Acylpyruvase FAHD1, mitochondrial, CHLORIDE ION, ...
Authors:Naschberger, A, Weiss, A.K.H.
Deposit date:2018-02-07
Release date:2018-11-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural basis for the bi-functionality of human oxaloacetate decarboxylase FAHD1.
Biochem. J., 475, 2018
1AIO
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BU of 1aio by Molmil
CRYSTAL STRUCTURE OF A DOUBLE-STRANDED DNA CONTAINING THE MAJOR ADDUCT OF THE ANTICANCER DRUG CISPLATIN
Descriptor: Cisplatin, DNA (5'-D(*CP*CP*(BRU)P*CP*TP*[PT(NH3)2(GP*GP)]*TP*CP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3')
Authors:Takahara, P.M, Rosenzweig, A.C, Frederick, C.A, Lippard, S.J.
Deposit date:1997-04-23
Release date:1997-04-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of double-stranded DNA containing the major adduct of the anticancer drug cisplatin.
Nature, 377, 1995
1X8N
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BU of 1x8n by Molmil
1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus Complexed With Nitric Oxide at pH 7.4
Descriptor: NITRIC OXIDE, Nitrophorin 4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kondrashov, D.A, Roberts, S.A, Weichsel, A, Montfort, W.R.
Deposit date:2004-08-18
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Protein functional cycle viewed at atomic resolution: conformational change and mobility in nitrophorin 4 as a function of pH and NO binding
Biochemistry, 43, 2004
1X8O
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1.01 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus Complexed With Nitric Oxide at pH 5.6
Descriptor: NITRIC OXIDE, Nitrophorin 4, PHOSPHATE ION, ...
Authors:Kondrashov, D.A, Roberts, S.A, Weichsel, A, Montfort, W.R.
Deposit date:2004-08-18
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Protein functional cycle viewed at atomic resolution: conformational change and mobility in nitrophorin 4 as a function of pH and NO binding
Biochemistry, 43, 2004
1X8Q
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0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius Prolixus in Complex with Water at pH 5.6
Descriptor: Nitrophorin 4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kondrashov, D.A, Roberts, S.A, Weichsel, A, Montfort, W.R.
Deposit date:2004-08-18
Release date:2004-10-05
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Protein functional cycle viewed at atomic resolution: conformational change and mobility in nitrophorin 4 as a function of pH and NO binding
Biochemistry, 43, 2004
6FVT
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26S proteasome, s1 state
Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ...
Authors:Eisele, M.R, Reed, R.G, Rudack, T, Schweitzer, A, Beck, F, Nagy, I, Pfeifer, G, Plitzko, J.M, Baumeister, W, Tomko, R.J, Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-22
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018
1U0X
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BU of 1u0x by Molmil
Crystal structure of nitrophorin 4 under pressure of xenon (200 psi)
Descriptor: AMMONIA, Nitrophorin 4, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Nienhaus, K, Maes, E.M, Weichsel, A, Montfort, W.R, Nienhaus, G.U.
Deposit date:2004-07-14
Release date:2004-07-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural dynamics controls nitric oxide affinity in nitrophorin 4
J.Biol.Chem., 279, 2004
6FVW
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BU of 6fvw by Molmil
26S proteasome, s4 state
Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ...
Authors:Eisele, M.R, Reed, R.G, Rudack, T, Schweitzer, A, Beck, F, Nagy, I, Pfeifer, G, Plitzko, J.M, Baumeister, W, Tomko, R.J, Sakata, E.
Deposit date:2018-03-05
Release date:2018-08-29
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating.
Cell Rep, 24, 2018

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數據於2024-06-19公開中

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