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PDB: 55 results
6PZL
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BU of 6pzl by Molmil
P. mirabilis hemolysin A mutant - Q125A
Descriptor: GLYCEROL, Hemolysin
Authors:Weaver, T.M, Novak, W.R.P, Bhattacharyya, B.
Deposit date:2019-08-01
Release date:2020-08-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Structure of the HpmA265 Q125A variant
To Be Published
6PYK
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BU of 6pyk by Molmil
P. mirabilis hemolysin A mutant - F80L
Descriptor: Hemolysin
Authors:Weaver, T.M, Novak, W.R.P, Bhattacharyya, B.
Deposit date:2019-07-30
Release date:2020-08-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of truncated hemolysin A variant F80L
To Be Published
6Q0P
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BU of 6q0p by Molmil
P. mirabilis hemolysin A mutant - Y134S
Descriptor: Hemolysin
Authors:Weaver, T.M, Novak, W.R.P.
Deposit date:2019-08-02
Release date:2020-08-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.542 Å)
Cite:Structure of the HpmA265 Q125A variant
To Be Published
2FUS
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BU of 2fus by Molmil
MUTATIONS OF FUMARASE THAT DISTINGUISH BETWEEN THE ACTIVE SITE AND A NEARBY DICARBOXYLIC ACID BINDING SITE
Descriptor: CITRIC ACID, FUMARASE C
Authors:Weaver, T.M, Lees, M, Banaszak, L.J.
Deposit date:1997-01-09
Release date:1997-07-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mutations of fumarase that distinguish between the active site and a nearby dicarboxylic acid binding site.
Protein Sci., 6, 1997
8VWT
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BU of 8vwt by Molmil
OGG1 bound to a nucleosome containing 8oxoG at SHL-6 (composite map)
Descriptor: 601 I strand (non-damaged strand), 601 J strand (damaged strand), Histone H2A type 1, ...
Authors:Weaver, T.M, Ling, J.A, Freudenthal, B.D.
Deposit date:2024-02-02
Release date:2024-10-30
Last modified:2025-01-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Contributing factors to the oxidation-induced mutational landscape in human cells.
Nat Commun, 15, 2024
8VWU
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BU of 8vwu by Molmil
Nucleosome containing 8oxoG at SHL4
Descriptor: 601 I strand (damaged strand), 601 J strand (non-damaged strand), Histone H2A type 1, ...
Authors:Weaver, T.M, Ling, J.A, Freudenthal, B.D.
Deposit date:2024-02-02
Release date:2024-10-30
Last modified:2025-01-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Contributing factors to the oxidation-induced mutational landscape in human cells.
Nat Commun, 15, 2024
8VWV
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BU of 8vwv by Molmil
OGG1 bound to a nucleosome containing 8oxoG at SHL4 (composite map)
Descriptor: 601 I strand (damaged strand), 601 J strand (non-damaged), Histone H2A type 1, ...
Authors:Weaver, T.M, Ling, J.A, Freudenthal, B.D.
Deposit date:2024-02-02
Release date:2024-10-30
Last modified:2025-01-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Contributing factors to the oxidation-induced mutational landscape in human cells.
Nat Commun, 15, 2024
8VWS
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BU of 8vws by Molmil
Nucleosome containing 8oxoG at SHL-6
Descriptor: 601 I strand (non-damaged strand), 601 J strand (damaged strand), Histone H2A type 1, ...
Authors:Weaver, T.M, Ling, J.A, Freudenthal, B.D.
Deposit date:2024-02-02
Release date:2024-10-30
Last modified:2025-01-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Contributing factors to the oxidation-induced mutational landscape in human cells.
Nat Commun, 15, 2024
6NZC
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BU of 6nzc by Molmil
Crystal structure of E. coli fumarase C N326A variant with closed SS Loop at 1.40 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Weaver, T.M, May, J.F, Bhattacharyya, B.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.403 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020
6NZA
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BU of 6nza by Molmil
Crystal structure of E. coli fumarase C K324A variant with closed SS Loop at 1.41 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Weaver, T.M, May, J.F, Bhattacharyya, B.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.406 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020
6NZB
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BU of 6nzb by Molmil
Crystal structure of E. coli fumarase C S318A variant with closed SS Loop at 1.37 angstrom resolution
Descriptor: CITRIC ACID, Fumarate hydratase class II
Authors:Weaver, T.M, May, J.F, Bhattacharyya, B.
Deposit date:2019-02-13
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Closed fumarase C active-site structures reveal SS Loop residue contribution in catalysis.
Febs Lett., 594, 2020
9DWK
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BU of 9dwk by Molmil
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-3.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-3.5
To Be Published
9DWF
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BU of 9dwf by Molmil
Nucleosome containing a 1-nt gap at SHL-4.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Nucleosome containing a 1-nt gap at SHL-4.5
To Be Published
9DWJ
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BU of 9dwj by Molmil
Nucleosome containing a 1-nt gap at SHL-3.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Nucleosome containing a 1-nt gap at SHL-3.5
To Be Published
9DWI
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BU of 9dwi by Molmil
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 3, composite)
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 4, composite)
To Be Published
9DWH
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BU of 9dwh by Molmil
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 2, composite)
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 2, composite)
To Be Published
9DWL
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BU of 9dwl by Molmil
Nucleosome containing a 1-nt gap at SHL-5.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Nucleosome containing a 1-nt gap at SHL-5.5
To Be Published
9DWG
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BU of 9dwg by Molmil
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 1, composite)
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 1, composite)
To Be Published
9DWM
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BU of 9dwm by Molmil
DNA polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-5.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:DNA polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-5.5
To Be Published
6X76
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BU of 6x76 by Molmil
Rev1 L325G Mn2+-facilitated Product Complex with second dCTP bound
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X72
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BU of 6x72 by Molmil
Rev1 Mg2+-facilitated Product Complex with two monophosphates
Descriptor: DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C*)-3'), DNA repair protein REV1, ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X75
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BU of 6x75 by Molmil
Rev1 Mn2+-facilitated Product Complex with second dCTP bound
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X6Z
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BU of 6x6z by Molmil
Rev1 Ternary Complex with dCTP and Ca2+
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X74
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BU of 6x74 by Molmil
Rev1 Mg2+-facilitated Product Complex with no monophosphates
Descriptor: CHLORIDE ION, DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C*)-3'), DNA (5'-D(P*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6X71
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BU of 6x71 by Molmil
Rev1 Mg2+-facilitated Intermediate complex with reactant dCTP and product dCMP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*CP*GP*CP*TP*AP*CP*CP*AP*CP*AP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*TP*GP*TP*GP*GP*TP*AP*GP*C*(MG))-3'), ...
Authors:Weaver, T.M, Freudenthal, B.D.
Deposit date:2020-05-29
Release date:2020-09-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Visualizing Rev1 catalyze protein-template DNA synthesis.
Proc.Natl.Acad.Sci.USA, 117, 2020

 

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