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PDB: 236 件
3VYS
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Crystal structure of the HypC-HypD-HypE complex (form I)
分子名称: Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, Hydrogenase expression/formation protein HypE, ...
著者Watanabe, S, Miki, K.
登録日2012-10-02
公開日2012-11-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYU
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Crystal structure of the HypC-HypD-HypE complex (form II)
分子名称: Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, Hydrogenase expression/formation protein HypE, ...
著者Watanabe, S, Miki, K.
登録日2012-10-02
公開日2012-11-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3A43
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BU of 3a43 by Molmil
Crystal structure of HypA
分子名称: Hydrogenase nickel incorporation protein hypA, ZINC ION
著者Watanabe, S, Arai, T, Matsumi, R, Aromi, H, Imanaka, T, Miki, K.
登録日2009-06-30
公開日2009-10-06
最終更新日2016-12-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
2Z1E
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BU of 2z1e by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (outward form)
分子名称: Hydrogenase expression/formation protein HypE
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1C
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BU of 2z1c by Molmil
Crystal structure of HypC from Thermococcus kodakaraensis KOD1
分子名称: GLYCEROL, Hydrogenase expression/formation protein HypC, TETRAETHYLENE GLYCOL
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2ZHG
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BU of 2zhg by Molmil
Crystal structure of SoxR in complex with DNA
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3'), FE2/S2 (INORGANIC) CLUSTER, ...
著者Watanabe, S, Kita, A, Kobayashi, K, Miki, K.
登録日2008-02-05
公開日2008-03-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
2Z1F
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BU of 2z1f by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (inward form)
分子名称: Hydrogenase expression/formation protein HypE
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1D
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BU of 2z1d by Molmil
Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis
分子名称: Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER
著者Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
登録日2007-05-08
公開日2007-07-17
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3A44
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BU of 3a44 by Molmil
Crystal structure of HypA in the dimeric form
分子名称: Hydrogenase nickel incorporation protein hypA, ZINC ION
著者Watanabe, S, Arai, T, Matsumi, R, Atomi, H, Imanaka, T, Miki, K.
登録日2009-06-30
公開日2009-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009
2ZHH
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BU of 2zhh by Molmil
Crystal structure of SoxR
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, FE2/S2 (INORGANIC) CLUSTER, Redox-sensitive transcriptional activator soxR
著者Watanabe, S, Kita, A, Kobayashi, K, Miki, K.
登録日2008-02-05
公開日2008-03-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
Proc.Natl.Acad.Sci.Usa, 105, 2008
8GST
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BU of 8gst by Molmil
Crystal structure of L-2,4-diketo-3-deoxyrhamnonate hydrolase from Sphingomonas sp. (pyruvate bound-form)
分子名称: L-2,4-diketo-3-deoxyrhamnonate hydrolase, MAGNESIUM ION, PYRUVIC ACID
著者Fukuhara, S, Watanabe, Y, Watanabe, S, Nishiwaki, H.
登録日2022-09-07
公開日2023-02-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Crystal Structure of l-2,4-Diketo-3-deoxyrhamnonate Hydrolase Involved in the Nonphosphorylated l-Rhamnose Pathway from Bacteria.
Biochemistry, 62, 2023
8GSR
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BU of 8gsr by Molmil
Crystal structure of L-2,4-diketo-3-deoxyrhamnonate hydrolase from Sphingomonas sp. (apo-form)
分子名称: L-2,4-diketo-3-deoxyrhamnonate hydrolase, MAGNESIUM ION
著者Fukuhara, S, Watanabe, Y, Watanabe, S, Nishiwaki, H.
登録日2022-09-07
公開日2023-02-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal Structure of l-2,4-Diketo-3-deoxyrhamnonate Hydrolase Involved in the Nonphosphorylated l-Rhamnose Pathway from Bacteria.
Biochemistry, 62, 2023
2LC2
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BU of 2lc2 by Molmil
Solution structure of the RXLR effector P. capsici AVR3a4
分子名称: AVR3a4
著者Li, H, Koshiba, S, Yaeno, T, Sato, M, Watanabe, S, Harada, T, Shirasu, K, Kigawa, T.
登録日2011-04-12
公開日2011-08-03
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A PIP-binding interface in the oomycete RXLR effector AVR3A is required for its accumulation in host cells to modulate plant immunity
To be Published
2KUQ
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BU of 2kuq by Molmil
Solution structure of the chimera of the PTB domain of SNT-2 and 19-residue peptide (aa 1571-1589) of HALK
分子名称: Fibroblast growth factor receptor substrate 3,LINKER,ALK tyrosine kinase receptor
著者Li, H, Koshiba, S, Tomizawa, T, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-02-24
公開日2010-05-26
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2
J.Struct.Funct.Genom., 11, 2010
2LEX
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BU of 2lex by Molmil
Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA
分子名称: DNA (5'-D(*CP*G*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*C*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*CP*G)-3'), Probable WRKY transcription factor 4, ...
著者Yamasaki, K, Kigawa, T, Watanabe, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-06-24
公開日2012-01-18
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for sequence-spscific DNA recognition by an Arabidopsis WRKY transcription factor
J.Biol.Chem., 2012
6L06
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BU of 6l06 by Molmil
Crystal structure of Escherichia coli phosphatidylserine decarboxylase (apo-form)
分子名称: Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
6L07
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BU of 6l07 by Molmil
Crystal structure of Escherichia coli phosphatidylserine decarboxylase (PE-bound form)
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain
著者Watanabe, Y, Watanabe, S.
登録日2019-09-26
公開日2020-04-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.
Structure, 28, 2020
7CGQ
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BU of 7cgq by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase E147A mutant (NADP and L-arabinose bound form)
分子名称: L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, alpha-L-arabinopyranose
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-07-02
公開日2020-07-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.208 Å)
主引用文献Crystal structure of bacterial L-arabinose 1-dehydrogenase in complex with L-arabinose and NADP+
Biochem.Biophys.Res.Commun., 530, 2020
7CNQ
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BU of 7cnq by Molmil
Crystal structure of Agrobacterium tumefaciens aconitase X (holo-form)
分子名称: (2~{S},3~{R})-3-oxidanylpyrrolidine-2-carboxylic acid, FE2/S2 (INORGANIC) CLUSTER, cis-3-hydroxy-L-proline dehydratase
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNR
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BU of 7cnr by Molmil
Crystal structure of Thermococcus kodakaraensis aconitase X (apo-form)
分子名称: DUF521 domain-containing protein, FE3-S4 CLUSTER, UPF0107 protein TK1248
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.39 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNP
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Crystal structure of Agrobacterium tumefaciens aconitase X (apo-form)
分子名称: FE2/S2 (INORGANIC) CLUSTER, MAGNESIUM ION, cis-3-hydroxy-L-proline dehydratase
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7CNS
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BU of 7cns by Molmil
Crystal structure of Thermococcus kodakaraensis aconitase X (holo-form)
分子名称: (3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID, DUF521 domain-containing protein, FE3-S4 CLUSTER, ...
著者Murase, Y, Watanabe, Y, Watanabe, S.
登録日2020-08-03
公開日2021-06-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Commun Biol, 4, 2021
7DO6
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BU of 7do6 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NADP bound-form)
分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase SDR
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-12-12
公開日2021-02-03
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
8XWK
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Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase from Herbaspillum huttiense (apo form)
分子名称: DI(HYDROXYETHYL)ETHER, SDR family oxidoreductase
著者Akagashi, M, Watanabe, S.
登録日2024-01-16
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a alpha-furanosyl hemiketal of substrates.
Sci Rep, 14, 2024
8Y4B
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BU of 8y4b by Molmil
Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase bound to L-2,4-DKDF and NADH
分子名称: L-2,4-diketo-3-deoxyfuconate, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SDR family oxidoreductase
著者Akagashi, M, Watanabe, S.
登録日2024-01-30
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a alpha-furanosyl hemiketal of substrates.
Sci Rep, 14, 2024

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