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PDB: 236 results

5XWM
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BU of 5xwm by Molmil
human ERp44 zinc-bound form
Descriptor: CHLORIDE ION, Endoplasmic reticulum resident protein 44, ZINC ION
Authors:Watanabe, S, Harayama, M, Inaba, K.
Deposit date:2017-06-30
Release date:2019-01-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Zinc regulates ERp44-dependent protein quality control in the early secretory pathway.
Nat Commun, 10, 2019
8JP6
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BU of 8jp6 by Molmil
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (Substate A)
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Watanabe, S, Inaba, K.
Deposit date:2023-06-10
Release date:2024-04-17
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JPG
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BU of 8jpg by Molmil
Cryo-EM structure of full-length ERGIC-53 with MCFD2
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Watanabe, S, Inaba, K.
Deposit date:2023-06-12
Release date:2024-04-17
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (6.76 Å)
Cite:Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP7
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BU of 8jp7 by Molmil
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate B)
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Watanabe, S, Inaba, K.
Deposit date:2023-06-10
Release date:2024-04-17
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP8
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BU of 8jp8 by Molmil
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate C)
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Watanabe, S, Inaba, K.
Deposit date:2023-06-10
Release date:2024-04-17
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP9
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BU of 8jp9 by Molmil
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate D)
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Watanabe, S, Inaba, K.
Deposit date:2023-06-10
Release date:2024-04-17
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP5
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BU of 8jp5 by Molmil
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (form B)
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Watanabe, S, Inaba, K.
Deposit date:2023-06-10
Release date:2024-04-17
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
8JP4
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BU of 8jp4 by Molmil
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (form A)
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Watanabe, S, Inaba, K.
Deposit date:2023-06-10
Release date:2024-04-17
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Nat Commun, 15, 2024
6IGH
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BU of 6igh by Molmil
Crystal structure of FT condition3
Descriptor: 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T
Authors:Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGI
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BU of 6igi by Molmil
Crystal structure of FT condition 2
Descriptor: 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T
Authors:Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGG
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BU of 6igg by Molmil
Crystal structure of FT condition 1
Descriptor: 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T
Authors:Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
6IGJ
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BU of 6igj by Molmil
Crystal structure of FT condition 4
Descriptor: MAGNESIUM ION, Protein FLOWERING LOCUS T
Authors:Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K.
Deposit date:2018-09-25
Release date:2019-12-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering.
Iscience, 21, 2019
5GU7
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BU of 5gu7 by Molmil
Crystal Structure of human ERp44 form II
Descriptor: Endoplasmic reticulum resident protein 44
Authors:Watanabe, S, Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GU6
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BU of 5gu6 by Molmil
Crystal structure of Human ERp44 form I
Descriptor: CHLORIDE ION, Endoplasmic reticulum resident protein 44
Authors:Watanabe, S, Inaba, K.
Deposit date:2016-08-26
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of pH-dependent client binding by ERp44, a key regulator of protein secretion at the ER-Golgi interface
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5AUQ
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BU of 5auq by Molmil
Crystal structure of ATPase-type HypB in the nucleotide free state
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUN
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BU of 5aun by Molmil
Crystal structure of the HypAB-Ni complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ParA/MinD family, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AZZ
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BU of 5azz by Molmil
Crystal structure of seleno-insulin
Descriptor: Insulin A chain, Insulin B chain
Authors:Watanabe, S, Okumura, M, Arai, K, Takei, T, Asahina, Y, Hojo, H, Iwaoka, M, Inaba, K.
Deposit date:2015-10-23
Release date:2017-05-03
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Preparation of Selenoinsulin as a Long-Lasting Insulin Analogue.
Angew. Chem. Int. Ed. Engl., 56, 2017
5AUO
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BU of 5auo by Molmil
Crystal structure of the HypAB-Ni complex (AMPPCP)
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AUP
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BU of 5aup by Molmil
Crystal structure of the HypAB complex
Descriptor: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog, ...
Authors:Watanabe, S, Kawashima, T, Nishitani, Y, Miki, K.
Deposit date:2015-05-27
Release date:2015-06-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.102 Å)
Cite:Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer
Proc.Natl.Acad.Sci.USA, 112, 2015
5AYK
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BU of 5ayk by Molmil
Crystal structure of ERdj5 form I
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, CHLORIDE ION, DnaJ homolog subfamily C member 10
Authors:Watanabe, S, Maegawa, K, Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
5AYL
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BU of 5ayl by Molmil
Crystal structure of ERdj5 form II
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, DnaJ homolog subfamily C member 10
Authors:Watanabe, S, Maegawa, K, Inaba, K.
Deposit date:2015-08-22
Release date:2017-02-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation
To Be Published
2D2E
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BU of 2d2e by Molmil
Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8
Descriptor: CHLORIDE ION, GLYCEROL, SufC protein
Authors:Watanabe, S, Kita, A, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
2D2F
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BU of 2d2f by Molmil
Crystal structure of atypical cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Watanabe, S, Kita, A, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-09-08
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Atypical Cytoplasmic ABC-ATPase SufC from Thermus thermophilus HB8.
J.Mol.Biol., 353, 2005
3VYT
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BU of 3vyt by Molmil
Crystal structure of the HypC-HypD-HypE complex (form I inward)
Descriptor: CHLORIDE ION, Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, ...
Authors:Watanabe, S, Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012
3VYR
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BU of 3vyr by Molmil
Crystal structure of the HypC-HypD complex
Descriptor: CITRIC ACID, Hydrogenase expression/formation protein HypC, Hydrogenase expression/formation protein HypD, ...
Authors:Watanabe, S, Miki, K.
Deposit date:2012-10-02
Release date:2012-11-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
Structure, 20, 2012

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