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PDB: 75 results

5INX
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BU of 5inx by Molmil
A C69-family cysteine dipeptidase in complex with Met and Ala from Lactobacillus farciminis
Descriptor: ALANINE, Dipeptidase, METHIONINE
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-08
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5IMH
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BU of 5imh by Molmil
D31P mutant of C69-family cysteine dipeptidase from Lactobacillus farciminis
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, COBALT (II) ION, ...
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-06
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.471 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5INR
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BU of 5inr by Molmil
A C69-family cysteine dipeptidase in complex with Ala-Pro from Lactobacillus farciminis
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ALANINE, ...
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-07
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5IMG
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BU of 5img by Molmil
C9A mutant of C69-family cysteine dipeptidase from Lactobacillus farciminis
Descriptor: COBALT (II) ION, Dipeptidase, GLYCEROL
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-06
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.844 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
1TAB
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BU of 1tab by Molmil
STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
Descriptor: BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN
Authors:Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K.
Deposit date:1990-10-15
Release date:1992-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
1UE4
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BU of 1ue4 by Molmil
Crystal structure of d(GCGAAAGC)
Descriptor: 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3', MAGNESIUM ION
Authors:Sunami, T, Kondo, J, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
Deposit date:2003-05-09
Release date:2004-03-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing.
Acta Crystallogr.,Sect.D, 60, 2004
1TUW
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BU of 1tuw by Molmil
Structural and Functional Analysis of Tetracenomycin F2 Cyclase from Streptomyces glaucescens: A Type-II Polyketide Cyclase
Descriptor: SULFATE ION, Tetracenomycin polyketide synthesis protein tcmI
Authors:Thompson, T.B, Katayama, K, Watanabe, K, Hutchinson, C.R, Rayment, I.
Deposit date:2004-06-25
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of tetracenomycin F2 cyclase from Streptomyces glaucescens. A type II polyketide cyclase.
J.Biol.Chem., 279, 2004
1V6C
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BU of 1v6c by Molmil
Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
Descriptor: CALCIUM ION, SULFATE ION, alkaline serine protease, ...
Authors:Dong, D, Ihara, T, Motoshima, H, Watanabe, K.
Deposit date:2003-11-28
Release date:2004-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
To be Published
1J1T
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BU of 1j1t by Molmil
Alginate lyase from Alteromonas sp.272
Descriptor: Alginate Lyase, CALCIUM ION, SULFATE ION
Authors:Motoshima, H, Iwatomo, Y, Watanabe, K, Oda, T, Muramatsu, T.
Deposit date:2002-12-14
Release date:2004-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Alginate Lyase from Alteromonas sp.272
To be published
5IB9
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BU of 5ib9 by Molmil
Crystal structure of aminopeptidase equipped with PAD from Aneurinibacillus sp. AM-1
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ZINC ION
Authors:Tagawa, R, Nakano, H, Watanabe, K.
Deposit date:2016-02-22
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of aminopeptidase
To Be Published
6KBC
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BU of 6kbc by Molmil
Crystal structure of CghA with Sch210972
Descriptor: (2S)-3-[(2S,4E)-4-[[(1R,2S,4aR,6S,8R,8aS)-2-[(E)-but-2-en-2-yl]-6,8-dimethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalen-1-yl]-oxidanyl-methylidene]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]-2-methyl-2-oxidanyl-propanoic acid, CghA
Authors:Hara, K, Hashimoto, H, Maeda, N, Sato, M, Watanabe, K.
Deposit date:2019-06-24
Release date:2020-06-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Catalytic mechanism and endo-to-exo selectivity reversion of an octalin-forming natural Diels-Alderase
Nat Catal, 2021
6LL8
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BU of 6ll8 by Molmil
Type II inorganic pyrophosphatase (PPase) from the psychrophilic bacterium Shewanella sp. AS-11, Mg-PNP form
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, FLUORIDE ION, ...
Authors:Horitani, M, Kusubayashi, K, Oshima, K, Yato, A, Sugimoto, H, Watanabe, K.
Deposit date:2019-12-21
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:X-ray Crystallography and Electron Paramagnetic Resonance Spectroscopy Reveal Active Site Rearrangement of Cold-Adapted Inorganic Pyrophosphatase.
Sci Rep, 10, 2020
6LL7
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BU of 6ll7 by Molmil
Type II inorganic pyrophosphatase (PPase) from the psychrophilic bacterium Shewanella sp. AS-11, Mn-activated form
Descriptor: CALCIUM ION, Inorganic pyrophosphatase, MANGANESE (II) ION
Authors:Horitani, M, Kusubayashi, K, Oshima, K, Yato, A, Sugimoto, H, Watanabe, K.
Deposit date:2019-12-21
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray Crystallography and Electron Paramagnetic Resonance Spectroscopy Reveal Active Site Rearrangement of Cold-Adapted Inorganic Pyrophosphatase.
Sci Rep, 10, 2020
6KJI
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BU of 6kji by Molmil
Crystal structure of PsoF with SAH
Descriptor: Dual-functional monooxygenase/methyltransferase psoF, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
Authors:Hara, K, Hashimoto, H, Matsushita, T, Tsunematsu, Y, Watanabe, K.
Deposit date:2019-07-22
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional and Structural Analyses oftrans C-Methyltransferase in Fungal Polyketide Biosynthesis.
Biochemistry, 58, 2019
1RY8
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BU of 1ry8 by Molmil
Prostaglandin F synthase complexed with NADPH and rutin
Descriptor: Aldo-keto reductase family 1 member C3, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, RUTIN
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
1RY0
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BU of 1ry0 by Molmil
Structure of prostaglandin F synthase with prostaglandin D2
Descriptor: Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROSTAGLANDIN D2
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
1V2X
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BU of 1v2x by Molmil
TrmH
Descriptor: PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (Gm18) methyltransferase
Authors:Nureki, O, Watanabe, K, Fukai, S, Ishii, R, Endo, Y, Hori, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-17
Release date:2004-05-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme
STRUCTURE, 12, 2004
5YY3
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BU of 5yy3 by Molmil
Crystal structure of AsqI
Descriptor: Uncharacterized protein AsqI
Authors:Hara, K, Hashimoto, H, Kishimoto, S, Watanabe, K.
Deposit date:2017-12-07
Release date:2018-08-01
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.305 Å)
Cite:Enzymatic one-step ring contraction for quinolone biosynthesis.
Nat Commun, 9, 2018
5YY2
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BU of 5yy2 by Molmil
Crystal structure of AsqI with Zn
Descriptor: Uncharacterized protein AsqI, ZINC ION
Authors:Hara, K, Hashimoto, H, Kishimoto, S, Watanabe, K.
Deposit date:2017-12-07
Release date:2018-08-01
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Enzymatic one-step ring contraction for quinolone biosynthesis.
Nat Commun, 9, 2018
6KJG
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BU of 6kjg by Molmil
Crystal structure of PsoF
Descriptor: Dual-functional monooxygenase/methyltransferase psoF
Authors:Hara, K, Hashimoto, H, Matsushita, T, Tsunematsu, Y, Watanabe, K.
Deposit date:2019-07-22
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional and Structural Analyses oftrans C-Methyltransferase in Fungal Polyketide Biosynthesis.
Biochemistry, 58, 2019
3VYV
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BU of 3vyv by Molmil
Crystal structure of subtilisin NAT at 1.36
Descriptor: CALCIUM ION, GLYCEROL, Subtilisin NAT
Authors:Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K.
Deposit date:2012-10-03
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure of subtilisin NAT at 1.36
TO BE PUBLISHED
3VPZ
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BU of 3vpz by Molmil
Crystal structure of glucokinase from Antarctic psychrotroph at 1.69A
Descriptor: Glucokinase
Authors:Oda, T, Fuchita, N, Motoshima, H, Kawamoto, M, Watanabe, K.
Deposit date:2012-03-16
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of glucokinase from Antarctic psychrotroph at 1.69A
To be Published
2EK9
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BU of 2ek9 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1 with Bestatin
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ISOPROPYL ALCOHOL, ...
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
2EK8
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BU of 2ek8 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1
Descriptor: Aminopeptidase, ISOPROPYL ALCOHOL, ZINC ION
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
2F38
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BU of 2f38 by Molmil
Crystal structure of prostaglandin F synathase containing bimatoprost
Descriptor: (5Z)-7-{(1R,2R,3R,5S)-3,5-DIHYDROXY-2-[(1E,3S)-3-HYDROXY-5-PHENYLPENT-1-ENYL]CYCLOPENTYL}-N-ETHYLHEPT-5-ENAMIDE, Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Komoto, J, Yamada, T, Watanabe, K, Woodward, D.F, Takusagawa, F.
Deposit date:2005-11-18
Release date:2006-10-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Prostaglandin F2alpha formation from prostaglandin H2 by prostaglandin F synthase (PGFS): crystal structure of PGFS containing bimatoprost.
Biochemistry, 45, 2006
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219869

數據於2024-05-15公開中

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