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PDB: 698 results

7EEI
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BU of 7eei by Molmil
Structure of Rift Valley fever virus RNA-dependent RNA polymerase
Descriptor: Replicase
Authors:Wang, X, Hu, C.X.
Deposit date:2021-03-18
Release date:2021-11-17
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of Rift Valley Fever Virus RNA-Dependent RNA Polymerase.
J.Virol., 96, 2022
4JE0
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BU of 4je0 by Molmil
Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Descriptor: CALCIUM ION, Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD
Authors:Wang, X, Ge, J, Yang, M.
Deposit date:2013-02-25
Release date:2013-06-19
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Protein Cell, 4, 2013
7CDI
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BU of 7cdi by Molmil
Crystal structure of SARS-CoV-2 antibody P2C-1F11 with RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, antibody P2C-1F11 heavy chain, ...
Authors:Wang, X, Zhang, L, Ge, J, Wang, R.
Deposit date:2020-06-19
Release date:2020-11-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Antibody neutralization of SARS-CoV-2 through ACE2 receptor mimicry.
Nat Commun, 12, 2021
4EGT
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BU of 4egt by Molmil
Crystal structure of major capsid protein P domain from rabbit hemorrhagic disease virus
Descriptor: Major capsid protein VP60
Authors:Wang, X, Xu, F, Zhang, K, Zhai, Y, Sun, F.
Deposit date:2012-04-01
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography.
Plos Pathog., 9, 2013
5HLZ
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BU of 5hlz by Molmil
Structure of Pro-Activin A Complex at 2.85 A resolution
Descriptor: Inhibin beta A chain
Authors:Wang, X, Fischer, G, Hyvonen, M.
Deposit date:2016-01-15
Release date:2016-07-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.851 Å)
Cite:Structure and activation of pro-activin A.
Nat Commun, 7, 2016
5HLY
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BU of 5hly by Molmil
Structure of Pro-Activin A Precursor at 2.3 A Resolution
Descriptor: CHLORIDE ION, Inhibin beta A chain
Authors:Wang, X, Fischer, G, Hyvonen, M.
Deposit date:2016-01-15
Release date:2016-07-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Structure and activation of pro-activin A.
Nat Commun, 7, 2016
7CDJ
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BU of 7cdj by Molmil
Crystal structure of SARS-CoV-2 antibody P2C-1A3 with RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, antibody P2C-1A3 heavy chain, ...
Authors:Wang, X, Zhang, L, Ge, J, Wang, R.
Deposit date:2020-06-19
Release date:2020-11-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.396 Å)
Cite:Antibody neutralization of SARS-CoV-2 through ACE2 receptor mimicry.
Nat Commun, 12, 2021
7FCE
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BU of 7fce by Molmil
Structure of the SARS-CoV-2 A372T spike glycoprotein (closed)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Wang, X, Zhang, S.
Deposit date:2021-07-14
Release date:2022-01-26
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Loss of Spike N370 glycosylation as an important evolutionary event for the enhanced infectivity of SARS-CoV-2.
Cell Res., 32, 2022
7FCD
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BU of 7fcd by Molmil
Structure of the SARS-CoV-2 A372T spike glycoprotein (open)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Wang, X, Zhang, S.
Deposit date:2021-07-14
Release date:2022-01-26
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Loss of Spike N370 glycosylation as an important evolutionary event for the enhanced infectivity of SARS-CoV-2.
Cell Res., 32, 2022
8WIL
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BU of 8wil by Molmil
Crystal structure of Jingmen tick virus RNA-dependent RNA polymerase (D55 construct)
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Jingmen tick virus NSP1, ...
Authors:Wang, X, Jing, X, Deng, F, Gong, P.
Deposit date:2023-09-24
Release date:2024-01-17
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A jingmenvirus RNA-dependent RNA polymerase structurally resembles the flavivirus counterpart but with different features at the initiation phase.
Nucleic Acids Res., 52, 2024
8WIM
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BU of 8wim by Molmil
Crystal structure of Jingmen tick virus RNA-dependent RNA polymerase (D307 construct)
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Jingmen tick virus NSP1, ...
Authors:Wang, X, Jing, X, Deng, F, Gong, P.
Deposit date:2023-09-24
Release date:2024-01-17
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:A jingmenvirus RNA-dependent RNA polymerase structurally resembles the flavivirus counterpart but with different features at the initiation phase.
Nucleic Acids Res., 52, 2024
2L9H
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BU of 2l9h by Molmil
Oligomeric Structure of the Chemokine CCL5/RANTES from NMR, MS, and SAXS Data
Descriptor: C-C motif chemokine 5
Authors:Wang, X, Watson, C.M, Sharp, J.S, Handel, T.M, Prestegard, J.H.
Deposit date:2011-02-09
Release date:2011-06-22
Last modified:2011-08-24
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Oligomeric Structure of the Chemokine CCL5/RANTES from NMR, MS, and SAXS Data.
Structure, 19, 2011
8VOH
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BU of 8voh by Molmil
HADDOCK models of human alphaM I-domain bound to the the N-terminal domain of the cytokine pleiotrophin
Descriptor: Integrin alpha-M, Pleiotrophin
Authors:Wang, X, Nguyen, H.
Deposit date:2024-01-15
Release date:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of alphaM I-domain of integrin Mac-1 in complex with the Cytokine Pleiotrophin
To Be Published
8VOI
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BU of 8voi by Molmil
HADDOCK models of active human alphaM I-domain bound to the the C-terminal domain of the cytokine pleiotrophin
Descriptor: Integrin alpha-M, MAGNESIUM ION, Pleiotrophin
Authors:Wang, X, Nguyen, H.
Deposit date:2024-01-15
Release date:2024-05-15
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:NMR structure of alphaM I-domain of integrin Mac-1 in complex with the Cytokine Pleiotrophin
To Be Published
8IDO
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BU of 8ido by Molmil
Crystal structure of nanobody VHH-T148 with MERS-CoV RBD
Descriptor: Spike protein S1, VHH-T148, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Wang, X, Tian, L.
Deposit date:2023-02-14
Release date:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures and neutralizing mechanisms of camel nanobodies targeting the receptor-binding domain of MERS-CoV spike glycoprotein
To Be Published
8IEE
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BU of 8iee by Molmil
Crystal structure of nanobody VHH-31 with MERS-CoV RBD
Descriptor: Spike protein S1, VHH-31
Authors:Wang, X, Tian, L.
Deposit date:2023-02-15
Release date:2024-02-28
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Structures and neutralizing mechanisms of camel nanobodies targeting the receptor-binding domain of MERS-CoV spike glycoprotein
To Be Published
8IFN
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BU of 8ifn by Molmil
MERS-CoV spike trimer in complex with nanobody VHH-T148
Descriptor: Spike glycoprotein, VHH-T148, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Wang, X, Tian, L.
Deposit date:2023-02-19
Release date:2024-02-28
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Structures and neutralizing mechanisms of camel nanobodies targeting the receptor-binding domain of MERS-CoV spike glycoprotein
To Be Published
8IDM
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BU of 8idm by Molmil
Crystal structure of nanobody VHH-227 with nanobody VHH-T71 and MERS-CoV RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, ...
Authors:Wang, X, Tian, L.
Deposit date:2023-02-13
Release date:2024-02-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.59 Å)
Cite:Structural Definition of a Novel Nanobody Binding Site specifically targeting the MERS-CoV RBD Core-Domain with Neutralizing Capacity
To Be Published
8IDI
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BU of 8idi by Molmil
Crystal structure of nanobody VHH-T71 with MERS-CoV RBD
Descriptor: Spike protein S1, VHH-T71, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Wang, X, Tian, L.
Deposit date:2023-02-13
Release date:2024-02-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural Definition of a Novel Nanobody Binding Site specifically targeting the MERS-CoV RBD Core-Domain with Neutralizing Capacity
To Be Published
7CWU
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BU of 7cwu by Molmil
SARS-CoV-2 spike proteins trimer in complex with P17 and FC05 Fabs cocktail
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Wang, X, Wang, N.
Deposit date:2020-08-31
Release date:2020-12-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure-based development of human antibody cocktails against SARS-CoV-2.
Cell Res., 31, 2021
8WQ0
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BU of 8wq0 by Molmil
Cryo-EM structure of WIV1 spike glycoprotein (the closed state)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Wang, X, Qiao, S.
Deposit date:2023-10-10
Release date:2024-07-17
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.78 Å)
Cite:Structural determinants of spike infectivity in bat SARS-like coronaviruses RsSHC014 and WIV1.
J.Virol., 98, 2024
8WLZ
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BU of 8wlz by Molmil
Cryo-EM structure of the WIV1 S-hACE2 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Wang, X, Qiao, S.
Deposit date:2023-10-01
Release date:2024-07-17
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (4.45 Å)
Cite:Structural determinants of spike infectivity in bat SARS-like coronaviruses RsSHC014 and WIV1.
J.Virol., 98, 2024
8WLU
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BU of 8wlu by Molmil
Cryo-EM structure of bat RsSHC014 spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
Authors:Wang, X, Qiao, S.
Deposit date:2023-10-01
Release date:2024-07-17
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Structural determinants of spike infectivity in bat SARS-like coronaviruses RsSHC014 and WIV1.
J.Virol., 98, 2024
8WLY
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BU of 8wly by Molmil
Cryo-EM structure of bat WIV1 spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
Authors:Wang, X, Qiao, S.
Deposit date:2023-10-01
Release date:2024-07-17
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Structural determinants of spike infectivity in bat SARS-like coronaviruses RsSHC014 and WIV1.
J.Virol., 98, 2024
6LGY
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BU of 6lgy by Molmil
Crystal structure of a cysteine-pair mutant (P10C-S291C) of a bacterial bile acid transporter in an inward-facing state complexed with glycine and sodium
Descriptor: 2,3-dihydroxypropyl (9Z)-octadec-9-enoate, GLYCINE, NONAETHYLENE GLYCOL, ...
Authors:Wang, X, Lyu, Y, Ji, Y, Sun, Z, Zhou, X.
Deposit date:2019-12-06
Release date:2020-12-09
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.247 Å)
Cite:Substrate binding in the bile acid transporter ASBT Yf from Yersinia frederiksenii.
Acta Crystallogr D Struct Biol, 77, 2021

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PDB entries from 2024-10-30

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