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PDB: 174 件
3WLU
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BU of 3wlu by Molmil
Crystal Structure of human galectin-9 NCRD with Selenolactose
分子名称: 2-(trimethylsilyl)ethyl 4-O-beta-D-galactopyranosyl-6-Se-methyl-6-seleno-beta-D-glucopyranoside, Galectin-9
著者Makyio, H, Suzuki, T, Ando, H, Yamada, Y, Ishida, H, Kiso, M, Wakatsuki, S, Kato, R.
登録日2013-11-14
公開日2014-11-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Expanded potential of seleno-carbohydrates as a molecular tool for X-ray structural determination of a carbohydrate-protein complex with single/multi-wavelength anomalous dispersion phasing
Bioorg.Med.Chem., 22, 2014
3VHT
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BU of 3vht by Molmil
Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
分子名称: Green fluorescent protein, Green fluorescent protein,ATPase WRNIP1, Ubiquitin, ...
著者Suzuki, N, Wakatsuki, S, Kawasaki, M.
登録日2011-09-06
公開日2012-10-10
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1.
Febs J., 2016
3ALB
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BU of 3alb by Molmil
Cyclic Lys48-linked tetraubiquitin
分子名称: SULFATE ION, ubiquitin
著者Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K.
登録日2010-07-29
公開日2010-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of cyclic Lys48-linked tetraubiquitin
Biochem.Biophys.Res.Commun., 2010
3AI4
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BU of 3ai4 by Molmil
Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein
分子名称: SULFATE ION, yeast enhanced green fluorescent protein,DNA polymerase iota
著者Suzuki, N, Wakatsuki, S, Kawasaki, M.
登録日2010-05-10
公開日2010-09-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3AI5
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BU of 3ai5 by Molmil
Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion protein
分子名称: 1,2-ETHANEDIOL, yeast enhanced green fluorescent protein,Ubiquitin
著者Suzuki, N, Wakatsuki, S, Kawasaki, M.
登録日2010-05-10
公開日2010-09-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystallization of small proteins assisted by green fluorescent protein
Acta Crystallogr.,Sect.D, 66, 2010
3BC1
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BU of 3bc1 by Molmil
Crystal Structure of the complex Rab27a-Slp2a
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-27A, ...
著者Chavas, L.M.G, Ihara, K, Kawasaki, M, Wakatsuki, S.
登録日2007-11-12
公開日2008-09-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a
Structure, 16, 2008
2D7I
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BU of 2d7i by Molmil
Crystal structure of pp-GalNAc-T10 with UDP, GalNAc and Mn2+
分子名称: 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kubota, T, Shiba, T, Sugioka, S, Kato, R, Wakatsuki, S, Narimatsu, H.
登録日2005-11-21
公開日2006-11-07
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2D7R
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BU of 2d7r by Molmil
Crystal structure of pp-GalNAc-T10 complexed with GalNAc-Ser on lectin domain
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kubota, T, Shiba, T, Sugioka, S, Kato, R, Wakatsuki, S, Narimatsu, H.
登録日2005-11-25
公開日2006-11-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10)
J.Mol.Biol., 359, 2006
2D0J
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BU of 2d0j by Molmil
Crystal Structure of Human GlcAT-S Apo Form
分子名称: Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
著者Shiba, T, Kakuda, S, Ishiguro, M, Oka, S, Kawasaki, T, Wakatsuki, S, Kato, R.
登録日2005-08-03
公開日2006-07-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope
To be published
2ZAO
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Crystal structure of mouse SKD1/VPS4B ADP-form
分子名称: ADENOSINE-5'-DIPHOSPHATE, Vacuolar protein sorting-associating protein 4B
著者Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
登録日2007-10-08
公開日2008-10-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
2ZN9
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BU of 2zn9 by Molmil
Crystal structure of Ca2+-bound form of des3-20ALG-2
分子名称: CALCIUM ION, DODECAETHYLENE GLYCOL, NONAETHYLENE GLYCOL, ...
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZHK
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BU of 2zhk by Molmil
Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine dimer (crystal 1)
分子名称: Galectin-9, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Nagae, M, Nishi, N, Murata, T, Usui, T, Nakamura, T, Wakatsuki, S, Kato, R.
登録日2008-02-06
公開日2008-12-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
2ZHL
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BU of 2zhl by Molmil
Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine dimer (crystal 2)
分子名称: Galectin-9, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Nagae, M, Nishi, N, Murata, T, Usui, T, Nakamura, T, Wakatsuki, S, Kato, R.
登録日2008-02-06
公開日2008-12-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
2Z5I
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BU of 2z5i by Molmil
Crystal structure of the head-to-tail junction of tropomyosin
分子名称: General control protein GCN4 and Tropomyosin alpha-1 chain, MAGNESIUM ION, Tropomyosin alpha-1 chain and General control protein GCN4
著者Murakami, K, Nozawa, K, Tomii, K, Kudou, N, Igarashi, N, Shirakihara, Y, Wakatsuki, S, Stewart, M, Yasunaga, T, Wakabayashi, T.
登録日2007-07-12
公開日2008-04-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T
Proc.Natl.Acad.Sci.USA, 105, 2008
2ZRT
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BU of 2zrt by Molmil
Crystal structure of Zn2+-bound form of des3-23ALG-2
分子名称: Programmed cell death protein 6, ZINC ION
著者Suzuki, H, Kawasaki, M, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-09-01
公開日2008-11-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2
ACTA CRYSTALLOGR.,SECT.F, 64, 2008
2ZRS
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BU of 2zrs by Molmil
Crystal structure of Ca2+-bound form of des3-23ALG-2
分子名称: CALCIUM ION, Programmed cell death protein 6
著者Suzuki, H, Kawasaki, M, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-09-01
公開日2008-11-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystallization and X-ray diffraction analysis of N-terminally truncated human ALG-2
ACTA CRYSTALLOGR.,SECT.F, 64, 2008
2ZHM
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BU of 2zhm by Molmil
Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine trimer (crystal 1)
分子名称: (R)-1-PARA-NITRO-PHENYL-2-AZIDO-ETHANOL, Galectin-9, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Nagae, M, Nishi, N, Murata, T, Usui, T, Nakamura, T, Wakatsuki, S, Kato, R.
登録日2008-02-06
公開日2008-12-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
2ZNE
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Crystal structure of Zn2+-bound form of des3-23ALG-2 complexed with Alix ABS peptide
分子名称: 16-meric peptide from Programmed cell death 6-interacting protein, Programmed cell death protein 6, SODIUM ION, ...
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZHN
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Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine trimer (crystal 2)
分子名称: (R)-1-PARA-NITRO-PHENYL-2-AZIDO-ETHANOL, GALECTIN-9, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Nagae, M, Nishi, N, Murata, T, Usui, T, Nakamura, T, Wakatsuki, S, Kato, R.
登録日2008-02-06
公開日2008-12-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural analysis of the recognition mechanism of poly-N-acetyllactosamine by the human galectin-9 N-terminal carbohydrate recognition domain.
Glycobiology, 19, 2009
2ZN8
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Crystal structure of Zn2+-bound form of ALG-2
分子名称: Programmed cell death protein 6, SODIUM ION, ZINC ION
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2ZND
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Crystal structure of Ca2+-free form of des3-20ALG-2
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, PHOSPHATE ION, Programmed cell death protein 6, ...
著者Suzuki, H, Kawasaki, M, Inuzuka, T, Kakiuchi, T, Shibata, H, Wakatsuki, S, Maki, M.
登録日2008-04-22
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure, 16, 2008
2Z9Y
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Crystal structure of CERT START domain in complex with C10-diacylglycerol
分子名称: (2S)-3-hydroxypropane-1,2-diyl didecanoate, Lipid-transfer protein CERT
著者Kudo, N, Kumagai, K, Wakatsuki, S, Nishijima, M, Hanada, K, Kato, R.
登録日2007-09-26
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis for specific lipid recognition by CERT responsible for nonvesicular trafficking of ceramide.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2ZAN
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Crystal structure of mouse SKD1/VPS4B ATP-form
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Vacuolar protein sorting-associating protein 4B
著者Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S.
登録日2007-10-08
公開日2008-10-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
3AAK
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BU of 3aak by Molmil
Crystal structure of Zn2+-bound form of des3-20ALG-2F122A
分子名称: Programmed cell death protein 6, ZINC ION
著者Inuzuka, T, Suzuki, H, Kawasaki, M, Shibata, H, Wakatsuki, S, Maki, M.
登録日2009-11-19
公開日2010-09-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition
Bmc Struct.Biol., 10, 2010
3AAJ
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Crystal structure of Ca2+-bound form of des3-23ALG-2deltaGF122
分子名称: CALCIUM ION, Programmed cell death protein 6
著者Suzuki, H, Inuzuka, T, Kawasaki, M, Shibata, H, Wakatsuki, S, Maki, M.
登録日2009-11-19
公開日2010-09-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition
Bmc Struct.Biol., 10, 2010

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