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PDB: 6 results

9DA2
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BU of 9da2 by Molmil
Crystal structure of human DNPH1 bound to inhibitor 1b
Descriptor: 1,2-ETHANEDIOL, 1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-5-(hydroxymethyl)pyrimidine-2,4(1H,3H)-dione, 5-hydroxymethyl-dUMP N-hydrolase, ...
Authors:Wagner, A.G, Schramm, V.L, Almo, S.C, Ghosh, A.
Deposit date:2024-08-21
Release date:2025-02-05
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Transition State Analogs of Human DNPH1 Reveal Two Electrophile Migration Mechanisms.
J.Med.Chem., 68, 2025
9DA3
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BU of 9da3 by Molmil
Crystal structure of human DNPH1 bound to inhibitor 2a
Descriptor: 5-hydroxymethyl-dUMP N-hydrolase, [(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)-6-oxo-1,6-dihydropyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate
Authors:Wagner, A.G, Schramm, V.L, Almo, S.C, Ghosh, A.
Deposit date:2024-08-21
Release date:2025-02-05
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Transition State Analogs of Human DNPH1 Reveal Two Electrophile Migration Mechanisms.
J.Med.Chem., 68, 2025
9DA6
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BU of 9da6 by Molmil
Crystal structure of human DNPH1 bound to inhibitor 3a
Descriptor: (3R,4R)-3-hydroxy-4-[(phosphonooxy)methyl]pyrrolidinium, 1,2-ETHANEDIOL, 5-hydroxymethyl-dUMP N-hydrolase
Authors:Wagner, A.G, Schramm, V.L, Almo, S.C, Ghosh, A.
Deposit date:2024-08-21
Release date:2025-02-05
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Transition State Analogs of Human DNPH1 Reveal Two Electrophile Migration Mechanisms.
J.Med.Chem., 68, 2025
9DA4
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BU of 9da4 by Molmil
Crystal structure of human DNPH1 bound to inhibitor 2b
Descriptor: 5-hydroxymethyl-dUMP N-hydrolase, {(3R,4R)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-hydroxypyrrolidin-3-yl}methyl dihydrogen phosphate
Authors:Wagner, A.G, Schramm, V.L, Almo, S.C, Ghosh, A.
Deposit date:2024-08-21
Release date:2025-02-05
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Transition State Analogs of Human DNPH1 Reveal Two Electrophile Migration Mechanisms.
J.Med.Chem., 68, 2025
9DA5
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BU of 9da5 by Molmil
Crystal structure of human DNPH1 bound to inhibitor 2c
Descriptor: 5-hydroxymethyl-dUMP N-hydrolase, [(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)pyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate
Authors:Wagner, A.G, Schramm, V.L, Almo, S.C, Ghosh, A.
Deposit date:2024-08-21
Release date:2025-02-05
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Transition State Analogs of Human DNPH1 Reveal Two Electrophile Migration Mechanisms.
J.Med.Chem., 68, 2025
9DA1
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BU of 9da1 by Molmil
Crystal structure of human DNPH1 bound to inhibitor 1a
Descriptor: 5-(hydroxymethyl)uridine 5'-(dihydrogen phosphate), 5-hydroxymethyl-dUMP N-hydrolase
Authors:Wagner, A.G, Schramm, V.L, Almo, S.C, Ghosh, A.
Deposit date:2024-08-21
Release date:2025-02-05
Last modified:2025-02-26
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Transition State Analogs of Human DNPH1 Reveal Two Electrophile Migration Mechanisms.
J.Med.Chem., 68, 2025

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PDB entries from 2025-03-26

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