PDB クエリの検索結果 - 日本蛋白質構造データバンク

PDB: 12479 件

ATP-binding state of the nucleotide-binding domain of Hsp70 DnaK mutant T199A
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, GLYCEROL, ...
著者	Wang, W, Hendrickson, W.A.
登録日	2021-07-04
公開日	2023-07-05
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.41 Å)
主引用文献	Visualization of Hsp70-catalyzed ATP Hydrolysis To Be Published

2FV0

UGL_D88N/dGlcA-Glc-Rha-Glc
分子名称:	2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase
著者	Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
登録日	2006-01-28
公開日	2006-05-30
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.91 Å)
主引用文献	Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun., 344, 2006

2G15

Structural Characterization of autoinhibited c-Met kinase
分子名称:	activated met oncogene
著者	Wang, W, Marimuthu, A, Tsai, J, Kumar, A, Krupka, H.I, Zhang, C, Powell, B, Suzuki, Y, Nguyen, H, Tabrizizad, M, Luu, C, West, B.L.
登録日	2006-02-13
公開日	2006-03-21
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.15 Å)
主引用文献	Structural characterization of autoinhibited c-Met kinase produced by coexpression in bacteria with phosphatase. Proc.Natl.Acad.Sci.Usa, 103, 2006

2G1L

Crystal structure of the FHA domain of human kinesin family member C
分子名称:	CHLORIDE ION, Kinesin-like protein KIF1C, NICKEL (II) ION, ...
著者	Wang, J, Tempel, W, Shen, Y, Shen, L, Arrowsmith, C, Edwards, A, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日	2006-02-14
公開日	2006-02-28
最終更新日	2023-08-30
実験手法	X-RAY DIFFRACTION (2.602 Å)
主引用文献	Crystal structure of the FHA domain of human kinesin family member C to be published

2G5C

Crystal Structure of Prephenate Dehydrogenase from Aquifex aeolicus
分子名称:	NICOTINAMIDE-ADENINE-DINUCLEOTIDE, prephenate dehydrogenase
著者	Sun, W, Singh, S, Zhang, R, Turnbull, J.L, Christendat, D.
登録日	2006-02-22
公開日	2006-03-07
最終更新日	2011-07-13
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Crystal Structure of Prephenate Dehydrogenase from Aquifex aeolicus: Insights into the Catalytic Mechanism J.Biol.Chem., 281, 2006

7R9J

Methanococcus maripaludis chaperonin, open conformation 4
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (6.3 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

7R9I

Methanococcus maripaludis chaperonin, open conformation 2
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (6.4 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

2G1E

Solution Structure of TA0895
分子名称:	hypothetical protein Ta0895
著者	Yeo, I.Y, Hong, E, Jung, J, Lee, W, Yee, A, Arrowsmith, C.H.
登録日	2006-02-14
公開日	2006-12-26
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Solution structure of TA0895, a MoaD homologue from Thermoplasma acidophilum Proteins, 65, 2006

2G6O

Structure of bovine eNOS heme domain (BH4-free) complexed with CO
分子名称:	ACETATE ION, ARGININE, CACODYLATE ION, ...
著者	Li, H, Igarashi, J, Jamal, J, Yang, W, Poulos, T.L.
登録日	2006-02-24
公開日	2006-08-08
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Structural studies of constitutive nitric oxide synthases with diatomic ligands bound. J.Biol.Inorg.Chem., 11, 2006

7R9K

Methanococcus maripaludis chaperonin, closed conformation 4
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (4.1 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

7R9H

Methanococcus maripaludis chaperonin, open conformation 2
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (6.3 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

7R9M

Methanococcus maripaludis chaperonin, closed conformation 2
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (4 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

7R9E

Methanococcus maripaludis chaperonin, open conformation 1
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (4 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

7RAK

Methanococcus maripaludis chaperonin complex in open conformation
分子名称:	ADENOSINE-5'-TRIPHOSPHATE, Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-07-01
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (3.9 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

7R9O

Methanococcus maripaludis chaperonin, closed conformation 1
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (4 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

2G5M

Spinophilin PDZ domain
分子名称:	Neurabin-2
著者	Kelker, M.S, Peti, W.
登録日	2006-02-23
公開日	2007-01-09
最終更新日	2024-05-29
実験手法	SOLUTION NMR
主引用文献	Structural basis for spinophilin-neurabin receptor interaction. Biochemistry, 46, 2007

7R9U

Methanococcus maripaludis chaperonin, closed conformation 3
分子名称:	Chaperonin
著者	Zhao, Y, Schmid, M, Frydman, J, Chiu, W.
登録日	2021-06-29
公開日	2021-08-11
最終更新日	2024-06-05
実験手法	ELECTRON MICROSCOPY (4.4 Å)
主引用文献	CryoEM reveals the stochastic nature of individual ATP binding events in a group II chaperonin. Nat Commun, 12, 2021

2G8V

B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product)
分子名称:	5'-D(APTPGPTPCPG)-3', 5'-R(PUPCPGPAPCPA)-3', ETHANOL, ...
著者	Nowotny, M, Yang, W.
登録日	2006-03-03
公開日	2006-04-25
最終更新日	2023-08-30
実験手法	X-RAY DIFFRACTION (1.85 Å)
主引用文献	Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release. Embo J., 25, 2006

2GH4

YteR/D143N/dGalA-Rha
分子名称:	2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR
著者	Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
登録日	2006-03-25
公開日	2006-08-29
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate Biochem.Biophys.Res.Commun., 347, 2006

7RTC

Crystal structure of the ARM domain from Drosophila SARM1 in complex with NaMN
分子名称:	NAD(+) hydrolase sarm1, NICOTINATE MONONUCLEOTIDE
著者	Gu, W, Ve, T, Kobe, B.
登録日	2021-08-13
公開日	2021-09-01
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (3.31 Å)
主引用文献	Nicotinic acid mononucleotide is an allosteric SARM1 inhibitor promoting axonal protection. Exp Neurol, 345, 2021

2GD4

Crystal Structure of the Antithrombin-S195A Factor Xa-Pentasaccharide Complex
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-4)-2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-methyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside, ...
著者	Johnson, D.J, Li, W, Adams, T.E, Huntington, J.A.
登録日	2006-03-15
公開日	2006-05-09
最終更新日	2024-03-13
実験手法	X-RAY DIFFRACTION (3.3 Å)
主引用文献	Antithrombin-S195A factor Xa-heparin structure reveals the allosteric mechanism of antithrombin activation. Embo J., 25, 2006

2G8K

B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site)
分子名称:	5'-D(APTPGPTPCPG)-3', 5'-R(UPCPGPAPCPA)-3', CALCIUM ION, ...
著者	Nowotny, M, Yang, W.
登録日	2006-03-02
公開日	2006-04-25
最終更新日	2023-08-30
実験手法	X-RAY DIFFRACTION (1.65 Å)
主引用文献	Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release. Embo J., 25, 2006

2G6H

Structure of rat nNOS heme domain (BH4 bound) in the reduced form
分子名称:	5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, ARGININE, ...
著者	Li, H, Igarashi, J, Jamal, J, Yang, W, Poulos, T.L.
登録日	2006-02-24
公開日	2006-08-08
最終更新日	2023-08-30
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Structural studies of constitutive nitric oxide synthases with diatomic ligands bound. J.Biol.Inorg.Chem., 11, 2006

2GF4

Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14
分子名称:	ACETATE ION, CALCIUM ION, Protein Vng1086c
著者	Benach, J, Zhou, W, Jayaraman, S, Forouhar, F.F, Janjua, H, Xiao, R, Ma, L.-C, Cunningham, K, Wang, D, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日	2006-03-21
公開日	2006-04-18
最終更新日	2017-10-18
実験手法	X-RAY DIFFRACTION (2.07 Å)
主引用文献	Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14 To be Published

2G8H

B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site)
分子名称:	5'-D(APTPGPTPCPG)-3', 5'-R(UPCPGPAPCPA)-3', MAGNESIUM ION, ...
著者	Nowotny, M, Yang, W.
登録日	2006-03-02
公開日	2006-04-25
最終更新日	2023-08-30
実験手法	X-RAY DIFFRACTION (1.85 Å)
主引用文献	Stepwise analyses of metal ions in RNase H catalysis from substrate destabilization to product release. Embo J., 25, 2006

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全ヒット件数:	12479
表示件数:	25
表示順	関連性が高い順
登録者:	"W."