Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 34877 件

8G32
DownloadVisualize
BU of 8g32 by Molmil
Pro-form of a CDCL short from E. anophelis
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
著者Johnstone, B.A, Christie, M.P, Morton, C.J, Parker, M.W.
登録日2023-02-06
公開日2024-02-07
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Distant relatives of a eukaryotic cell-specific toxin family evolved a complement-like mechanism to kill bacteria.
Nat Commun, 15, 2024
3NCR
DownloadVisualize
BU of 3ncr by Molmil
GlnK2 from Archaeoglubus fulgidus, ADP complex
分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
著者Helfmann, S, Lue, W, Litz, C, Andrade, S.L.A.
登録日2010-06-05
公開日2010-07-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Cooperative binding of MgATP and MgADP in the trimeric P(II) protein GlnK2 from Archaeoglobus fulgidus.
J.Mol.Biol., 402, 2010
8G33
DownloadVisualize
BU of 8g33 by Molmil
Activated form of a CDCL long protein
分子名称: Hemolysin
著者Johnstone, B.A, Christie, M.P, Morton, C.J, Parker, M.W.
登録日2023-02-06
公開日2024-02-07
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Activated form of a CDCL long protein
To Be Published
4B75
DownloadVisualize
BU of 4b75 by Molmil
Discovery of an allosteric mechanism for the regulation of HCV NS3 protein function
分子名称: (2S)-4-amino-N-[(1R)-1-(4-chloro-2-fluoro-3-phenoxyphenyl)propyl]-4-oxobutan-2-aminium, NON-STRUCTURAL PROTEIN 4A, SERINE PROTEASE NS3
著者Saalau-Bethell, S.M, Woodhead, A.J, Chessari, G, Carr, M.G, Coyle, J, Graham, B, Hiscock, S.D, Murray, C.W, Pathuri, P, Rich, S.J, Richardson, C.J, Williams, P.A, Jhoti, H.
登録日2012-08-16
公開日2012-10-03
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Discovery of an Allosteric Mechanism for the Regulation of Hcv Ns3 Protein Function.
Nat.Chem.Biol., 8, 2012
6DON
DownloadVisualize
BU of 6don by Molmil
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 100 mM K+ for 120 s at 21 C (dataset 1)
分子名称: 1,2-ETHANEDIOL, 5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3', 5'-R(P*CP*G)-3' portion of cleaved RNA (5'-R(*AP*CP*AP*UP*CP*G)-3'), ...
著者Samara, N.L, Yang, W.
登録日2018-06-09
公開日2018-08-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.422 Å)
主引用文献Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol., 25, 2018
1PBL
DownloadVisualize
BU of 1pbl by Molmil
STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE
分子名称: RNA (5'-R(*OMCP*OMGP*OMCP*OMGP*OMCP*OMG)-3')
著者Popenda, M, Biala, E, Milecki, J, Adamiak, R.W.
登録日1996-08-05
公開日1997-07-07
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2'-O-Me(CGCGCG)2 under low salt conditions.
Nucleic Acids Res., 25, 1997
6DPF
DownloadVisualize
BU of 6dpf by Molmil
Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 40 mM Mn2+ and 200 mM K+ for 40 s at 21 C
分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ...
著者Samara, N.L, Yang, W.
登録日2018-06-09
公開日2018-08-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Cation trafficking propels RNA hydrolysis.
Nat. Struct. Mol. Biol., 25, 2018
3N6O
DownloadVisualize
BU of 3n6o by Molmil
Crystal structure of the GEF and P4M domain of DrrA/SidM from Legionella pneumophila
分子名称: SULFATE ION, guanine nucleotide exchange factor
著者Schoebel, S, Blankenfeldt, W, Goody, R.S, Itzen, A.
登録日2010-05-26
公開日2010-07-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献High-affinity binding of phosphatidylinositol 4-phosphate by Legionella pneumophila DrrA.
Embo Rep., 11, 2010
3U2T
DownloadVisualize
BU of 3u2t by Molmil
Crystal Structure of Human Glycogenin-1 (GYG1) complexed with manganese
分子名称: 1,2-ETHANEDIOL, Glycogenin-1, MANGANESE (II) ION
著者Chaikuad, A, Froese, D.S, Krysztofinska, E, von Delft, F, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Oppermann, U, Yue, W.W, Structural Genomics Consortium (SGC)
登録日2011-10-04
公開日2011-11-02
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Conformational plasticity of glycogenin and its maltosaccharide substrate during glycogen biogenesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
7YAA
DownloadVisualize
BU of 7yaa by Molmil
Crystal structure analysis of cp3 bound BCLxl
分子名称: Bcl-2-like protein 1, GLYCEROL, N-(2-acetamidoethyl)-4-(4-methanoyl-1,3-thiazol-2-yl)benzamide, ...
著者Li, F.W, Liu, C, Wu, C.L, Wu, D.L.
登録日2022-06-27
公開日2023-11-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Cyclic peptides discriminate BCL-2 and its clinical mutants from BCL-X L by engaging a single-residue discrepancy.
Nat Commun, 15, 2024
2VJT
DownloadVisualize
BU of 2vjt by Molmil
The Structure of Allophycocyanin from Gloeobacter Violaceus
分子名称: ALLOPHYCOCYANIN ALPHA SUBUNIT, ALLOPHYCOCYANIN BETA SUBUNIT, PHYCOCYANOBILIN
著者Murray, J.W, Benson, S, Nield, J, Barber, J.
登録日2007-12-13
公開日2008-03-25
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Structures of the Phycobiliproteins of Gloeobacter Violaceus
To be Published
7Y90
DownloadVisualize
BU of 7y90 by Molmil
Crystal Structure Analysis of cp1 bound BCL2
分子名称: (2R)-3-[2-(aminomethyl)-3-azanyl-1-[4-[2-(2-chloranylethanoylamino)ethylcarbamoyl]phenyl]prop-1-enyl]sulfanyl-2-(carboxyamino)propanoic acid, Apoptosis regulator Bcl-2, cp1 peptide
著者Li, F.W.
登録日2022-06-24
公開日2023-11-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Cyclic peptides discriminate BCL-2 and its clinical mutants from BCL-X L by engaging a single-residue discrepancy.
Nat Commun, 15, 2024
3NA0
DownloadVisualize
BU of 3na0 by Molmil
Crystal structure of human CYP11A1 in complex with 20,22-dihydroxycholesterol
分子名称: (3alpha,8alpha,22R)-cholest-5-ene-3,20,22-triol, Adrenodoxin, mitochondrial, ...
著者Strushkevich, N.V, MacKenzie, F, Tempel, W, Botchkarev, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J.U, Park, H, Structural Genomics Consortium (SGC)
登録日2010-05-31
公開日2010-09-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for pregnenolone biosynthesis by the mitochondrial monooxygenase system.
Proc.Natl.Acad.Sci.USA, 108, 2011
7Y8D
DownloadVisualize
BU of 7y8d by Molmil
Crystal structure of cp1 bound BCLxl
分子名称: (2R)-3-[2-(aminomethyl)-3-azanyl-1-[4-[2-(2-chloranylethanoylamino)ethylcarbamoyl]phenyl]prop-1-enyl]sulfanyl-2-(carboxyamino)propanoic acid, Bcl-2-like protein 1, cp1 peptide
著者Li, F.W, Liu, C, Wu, C.L, Wu, D.L.
登録日2022-06-23
公開日2023-11-15
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Cyclic peptides discriminate BCL-2 and its clinical mutants from BCL-X L by engaging a single-residue discrepancy.
Nat Commun, 15, 2024
7YA5
DownloadVisualize
BU of 7ya5 by Molmil
Crystal structure analysis of cp1 bound BCL2/G101V
分子名称: (2R)-3-[2-(aminomethyl)-3-azanyl-1-[4-[2-(2-chloranylethanoylamino)ethylcarbamoyl]phenyl]prop-1-enyl]sulfanyl-2-(carboxyamino)propanoic acid, Apoptosis regulator Bcl-2, cp1 peptide
著者Li, F.W, Liu, C, Wu, C.L, Wu, D.L.
登録日2022-06-27
公開日2023-11-15
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Cyclic peptides discriminate BCL-2 and its clinical mutants from BCL-X L by engaging a single-residue discrepancy.
Nat Commun, 15, 2024
7YB7
DownloadVisualize
BU of 7yb7 by Molmil
anti-apoptotic protein BCL-2-M12
分子名称: Apoptosis regulator Bcl-2,Bcl-2-like protein 1, N-(2-acetamidoethyl)-4-(4,5-dihydro-1,3-thiazol-2-yl)benzamide, cp2 peptide
著者Li, F.W, Liu, C, Wu, D.L.
登録日2022-06-29
公開日2023-11-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Cyclic peptides discriminate BCL-2 and its clinical mutants from BCL-X L by engaging a single-residue discrepancy.
Nat Commun, 15, 2024
3N15
DownloadVisualize
BU of 3n15 by Molmil
Crystal stricture of E145Q chitinase in complex with NAG from Bacillus cereus NCTU2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase A
著者Hsieh, Y.-C, Wu, Y.-J, Wu, W.-G, Li, Y.-K, Chen, C.-J.
登録日2010-05-15
公開日2010-08-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structures of bacillus cereus NCTU2 chitinase complexes with chitooligomers reveal novel substrate binding for catalysis: a chitinase without chitin-binding and insertion domains
J.Biol.Chem., 285, 2010
4BHX
DownloadVisualize
BU of 4bhx by Molmil
Crystal structure of the SCAN domain from human paternally expressed gene 3 protein
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, PATERNALLY-EXPRESSED GENE 3 PROTEIN, ...
著者Rimsa, V, Eadsforth, T.C, Hunter, W.N.
登録日2013-04-09
公開日2013-04-17
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure of the Scan Domain of Human Paternally Expressed Gene 3 Protein.
Plos One, 8, 2013
8SFJ
DownloadVisualize
BU of 8sfj by Molmil
WT CRISPR-Cas12a with a 10bp R-loop
分子名称: CRISPR-associated endonuclease Cas12a, DNA (5'-D(P*CP*AP*CP*TP*TP*AP*TP*CP*AP*CP*TP*AP*AP*AP*AP*GP*AP*TP*CP*GP*GP*AP*AP*G)-3'), DNA (5'-D(P*CP*TP*TP*CP*CP*GP*AP*TP*CP*TP*TP*TP*TP*AP*GP*TP*GP*AP*T)-3'), ...
著者Strohkendl, I, Taylor, D.W.
登録日2023-04-11
公開日2024-07-03
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献WT CRISPR-Cas12a with a 10bp R-loop
To Be Published
6BHH
DownloadVisualize
BU of 6bhh by Molmil
Crystal structure of SETDB1 with a modified H3 peptide
分子名称: Histone H3.1, Histone-lysine N-methyltransferase SETDB1, SULFATE ION, ...
著者Qin, S, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
登録日2017-10-30
公開日2017-11-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献H3K14ac is linked to methylation of H3K9 by the triple Tudor domain of SETDB1.
Nat Commun, 8, 2017
8SFL
DownloadVisualize
BU of 8sfl by Molmil
WT CRISPR-Cas12a with a 15bp R-loop
分子名称: CRISPR-associated endonuclease Cas12a, DNA (40-MER), RNA (34-MER)
著者Strohkendl, I, Taylor, D.W.
登録日2023-04-11
公開日2024-07-03
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献WT CRISPR-Cas12a with a 15bp R-loop
To Be Published
1PFL
DownloadVisualize
BU of 1pfl by Molmil
REFINED SOLUTION STRUCTURE OF HUMAN PROFILIN I
分子名称: PROFILIN I
著者Metzler, W.J, Farmer II, B.T, Constantine, K.L, Friedrichs, M.S, Lavoie, T, Mueller, L.
登録日1994-12-12
公開日1995-03-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Refined solution structure of human profilin I.
Protein Sci., 4, 1995
8SFO
DownloadVisualize
BU of 8sfo by Molmil
WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
分子名称: CRISPR-associated endonuclease Cas12a, DNA (35-MER), DNA (40-MER), ...
著者Strohkendl, I, Taylor, D.W.
登録日2023-04-11
公開日2024-07-03
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献WT CRISPR-Cas12a with a 20bp R-loop and nontarget strand in the RuvC active site.
To Be Published
8T4N
DownloadVisualize
BU of 8t4n by Molmil
DB1976 Bound to the DNA Sequence 5'-CGCGAATTCGCG-3
分子名称: (2M,2'M)-2,2'-(selenophene-2,5-diyl)di(1H-benzimidazole-6-carboximidamide), DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
著者Terrell, J.R, Poon, G.M.K, Wilson, W.D.
登録日2023-06-09
公開日2024-06-12
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structural studies on the PU.1 inhibitory mechanism by diamidine minor groove binders
To Be Published
7VPQ
DownloadVisualize
BU of 7vpq by Molmil
Structures of a deltacoronavirus spike protein bound to porcine and human receptors indicate the risk of virus adaptation to humans
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Ji, W, Xu, Y, Zhang, S.
登録日2021-10-17
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structures of a deltacoronavirus spike protein bound to porcine and human receptors.
Nat Commun, 13, 2022

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon