Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 109 results

6EPZ
DownloadVisualize
BU of 6epz by Molmil
Structure of the periplasmic binding protein MelB (Atu4661) in complex with melibiose from Agrobacterium fabrum C58
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EQ8
DownloadVisualize
BU of 6eq8 by Molmil
Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with galactinol from agrobacterium fabrum C58
Descriptor: 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, CALCIUM ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
5HEI
DownloadVisualize
BU of 5hei by Molmil
Structure of B. megaterium NfrA2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, FLAVIN MONONUCLEOTIDE, NfrA2, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-01-06
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.
Biochem.J., 473, 2016
5HDJ
DownloadVisualize
BU of 5hdj by Molmil
Structure of B. megaterium NfrA1
Descriptor: 1,2-ETHANEDIOL, FLAVIN MONONUCLEOTIDE, NfrA1
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-01-05
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.
Biochem.J., 473, 2016
5ITO
DownloadVisualize
BU of 5ito by Molmil
Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine
Descriptor: 1,2-ETHANEDIOL, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
5ITP
DownloadVisualize
BU of 5itp by Molmil
Structure of the periplasmic binding protein NocT from A.tumefaciens in complex with octopine
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nopaline-binding periplasmic protein, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
4P0I
DownloadVisualize
BU of 4p0i by Molmil
Structure of the PBP NocT
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nopaline-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2014-02-21
Release date:2014-10-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
6EQ0
DownloadVisualize
BU of 6eq0 by Molmil
Structure of the periplasmic binding protein (PBP) MelB (atu4661) in complex with galactose from agrobacterium tumefacien C58
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EQ1
DownloadVisualize
BU of 6eq1 by Molmil
Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with stachyose from agrobacterium fabrum C58
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6FT2
DownloadVisualize
BU of 6ft2 by Molmil
Structure of the periplasmic binding protein LAO-Q122A in complex with arginine.
Descriptor: 1,2-ETHANEDIOL, ARGININE, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2018-02-20
Release date:2018-03-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structure of the periplasmic binding protein LAO-Q122A A in complex with arginin
To Be Published
5OVZ
DownloadVisualize
BU of 5ovz by Molmil
High resolution structure of the PBP NocT in complex with nopaline
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-30
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5ORG
DownloadVisualize
BU of 5org by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from A. tumefaciens B6 in complex with octopine.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-16
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OT8
DownloadVisualize
BU of 5ot8 by Molmil
Structure of the periplasmic binding protein (PBP) NocT-G97S mutant from A. tumefaciens C58 in complex with octopine.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTA
DownloadVisualize
BU of 5ota by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with octopinic acid
Descriptor: (2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid, 1,2-ETHANEDIOL, Nopaline-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTC
DownloadVisualize
BU of 5otc by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with noroctopinic acid.
Descriptor: (2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5ORE
DownloadVisualize
BU of 5ore by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from agrobacterium tumefaciens B6
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Octopine-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-16
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OT9
DownloadVisualize
BU of 5ot9 by Molmil
Structure of the periplasmic binding protein (PBP) NocT from A.tumefaciens C58 in complex with histopine.
Descriptor: 1,2-ETHANEDIOL, Histopine, Nopaline-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
4POW
DownloadVisualize
BU of 4pow by Molmil
Structure of the PBP NocT in complex with pyronopaline
Descriptor: 1,2-ETHANEDIOL, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline, Nopaline-binding periplasmic protein
Authors:Morera, S, Vigouroux, A.
Deposit date:2014-02-26
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
4PZ2
DownloadVisualize
BU of 4pz2 by Molmil
Structure of Zm ALDH2-6 (RF2F) in complex with NAD
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2014-03-28
Release date:2015-03-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7.
Biochem.J., 468, 2015
6R5S
DownloadVisualize
BU of 6r5s by Molmil
Structure of the SBP FpvC from pseudomonas aeruginosa in complex with Fe(II)
Descriptor: 1,2-ETHANEDIOL, Adhesion protein, FE (II) ION
Authors:Morera, S, Vigouroux, A.
Deposit date:2019-03-25
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 287, 2020
6R6K
DownloadVisualize
BU of 6r6k by Molmil
Structure of a FpvC mutant from pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, ABC transporter substrate-binding protein, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2019-03-27
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 287, 2020
1RER
DownloadVisualize
BU of 1rer by Molmil
Crystal structure of the homotrimer of fusion glycoprotein E1 from Semliki Forest Virus.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gibbons, D.L, Vaney, M.C, Roussel, A, Vigouroux, A, Reilly, B, Kielian, M, Rey, F.A.
Deposit date:2003-11-07
Release date:2004-01-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational change and protein-protein interactions of the fusion protein of Semliki Forest virus.
Nature, 427, 2004
8CAY
DownloadVisualize
BU of 8cay by Molmil
PBP AccA from A. tumefaciens Bo542 in complex with Agrocinopine D-like
Descriptor: Agrocinopine D-like (C2-C2 linked; with an alpha and beta-D-glucopyranose), Agrocinopine D-like (C2-C2 linked; with two alpha-D-glucopyranoses), Agrocinopine utilization periplasmic binding protein AccA, ...
Authors:Morera, S, Vigouroux, A, Siragu, S.
Deposit date:2023-01-24
Release date:2024-01-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.626 Å)
Cite:A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8C6U
DownloadVisualize
BU of 8c6u by Molmil
PBP AccA-G145YG440Q mutant from A. tumefaciens Bo542 in apoform 4
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Agrocinopine utilization periplasmic binding protein AccA, ...
Authors:Morera, S, Vigouroux, A, Legrand, P.
Deposit date:2023-01-12
Release date:2024-01-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.843 Å)
Cite:A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
8CH3
DownloadVisualize
BU of 8ch3 by Molmil
PBP AccA from A. vitis S4 in complex with Agrocinopine C-like
Descriptor: 2-O-phosphono-alpha-D-glucopyranose, Agrocinopine utilization periplasmic binding protein AccA, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Morera, S, Vigouroux, A.
Deposit date:2023-02-06
Release date:2024-01-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.398 Å)
Cite:A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon