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PDB: 113 results

5HEI
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BU of 5hei by Molmil
Structure of B. megaterium NfrA2
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, FLAVIN MONONUCLEOTIDE, NfrA2, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-01-06
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.
Biochem.J., 473, 2016
5HDJ
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BU of 5hdj by Molmil
Structure of B. megaterium NfrA1
Descriptor: 1,2-ETHANEDIOL, FLAVIN MONONUCLEOTIDE, NfrA1
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-01-05
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.
Biochem.J., 473, 2016
6FT2
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BU of 6ft2 by Molmil
Structure of the periplasmic binding protein LAO-Q122A in complex with arginine.
Descriptor: 1,2-ETHANEDIOL, ARGININE, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2018-02-20
Release date:2018-03-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structure of the periplasmic binding protein LAO-Q122A A in complex with arginin
To Be Published
5ITO
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BU of 5ito by Molmil
Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine
Descriptor: 1,2-ETHANEDIOL, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
5ITP
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BU of 5itp by Molmil
Structure of the periplasmic binding protein NocT from A.tumefaciens in complex with octopine
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nopaline-binding periplasmic protein, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2016-03-17
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Fitness costs restrict niche expansion by generalist niche-constructing pathogens.
ISME J, 11, 2017
6EQ0
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BU of 6eq0 by Molmil
Structure of the periplasmic binding protein (PBP) MelB (atu4661) in complex with galactose from agrobacterium tumefacien C58
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EQ1
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BU of 6eq1 by Molmil
Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with stachyose from agrobacterium fabrum C58
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EPZ
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BU of 6epz by Molmil
Structure of the periplasmic binding protein MelB (Atu4661) in complex with melibiose from Agrobacterium fabrum C58
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6EQ8
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BU of 6eq8 by Molmil
Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with galactinol from agrobacterium fabrum C58
Descriptor: 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, CALCIUM ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-10-12
Release date:2018-04-18
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
5ORE
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BU of 5ore by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from agrobacterium tumefaciens B6
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Octopine-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-16
Release date:2017-12-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTA
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BU of 5ota by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with octopinic acid
Descriptor: (2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid, 1,2-ETHANEDIOL, Nopaline-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OT9
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BU of 5ot9 by Molmil
Structure of the periplasmic binding protein (PBP) NocT from A.tumefaciens C58 in complex with histopine.
Descriptor: 1,2-ETHANEDIOL, Histopine, Nopaline-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5ORG
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BU of 5org by Molmil
Structure of the periplasmic binding protein (PBP) OccJ from A. tumefaciens B6 in complex with octopine.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-16
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
4P0I
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BU of 4p0i by Molmil
Structure of the PBP NocT
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Nopaline-binding periplasmic protein
Authors:Vigouroux, A, Morera, S.
Deposit date:2014-02-21
Release date:2014-10-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
5OT8
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BU of 5ot8 by Molmil
Structure of the periplasmic binding protein (PBP) NocT-G97S mutant from A. tumefaciens C58 in complex with octopine.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OTC
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BU of 5otc by Molmil
Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in complex with noroctopinic acid.
Descriptor: (2~{S})-5-azanyl-2-(2-hydroxy-2-oxoethylamino)pentanoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-21
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.
Sci Rep, 7, 2017
5OVZ
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BU of 5ovz by Molmil
High resolution structure of the PBP NocT in complex with nopaline
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid, ...
Authors:Vigouroux, A, Morera, S.
Deposit date:2017-08-30
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
8CKO
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BU of 8cko by Molmil
PBP AccA from A.tumefaciens C58 in complex with agrocinopine C-like
Descriptor: 2-O-phosphono-alpha-D-glucopyranose, 2-O-phosphono-beta-D-glucopyranose, ABC transporter substrate-binding protein, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2023-02-16
Release date:2024-01-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.421 Å)
Cite:A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024
3LA6
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BU of 3la6 by Molmil
Octameric kinase domain of the E. coli tyrosine kinase Wzc with bound ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Tyrosine-protein kinase wzc
Authors:Gruszczyk, J, Nessler, S, Gueguen-Chaignon, V, Vigouroux, A, Bechet, E, Grangeasse, C.
Deposit date:2010-01-06
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Identification of structural and molecular determinants of the tyrosine-kinase Wzc and implications in capsular polysaccharide export
Mol.Microbiol., 77, 2010
3H2W
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BU of 3h2w by Molmil
Structure of A. acidocaldarius cellulase CelA in complex with cellobiose
Descriptor: CALCIUM ION, COBALT (II) ION, Cellulase, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2009-04-14
Release date:2009-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Crystal structures of A. acidocaldarius endoglucanase Cel9A in complex with Cello-oligosaccharides: strong -1 and -2 subsites mimic cellobiohydrolase activity
J.Mol.Biol., 394, 2009
9FW6
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BU of 9fw6 by Molmil
A ternary complex of plant adenosine kinase 1 from moss Physcomitrella patens (PpADK1) with adenosine and ADP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Kopecny, D, Vigouroux, A, Morera, S.
Deposit date:2024-06-28
Release date:2025-04-09
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A monomer-dimer switch modulates the activity of plant adenosine kinase.
J.Exp.Bot., 2025
6I7W
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BU of 6i7w by Molmil
Structure of the periplasmic binding protein (PBP) AccA in complex with 2-glucose-2-O-lactic acid phosphate (G2LP) from Agrobacterium fabrum C58
Descriptor: 2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-alpha-D-glucopyranose, 2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-beta-D-glucopyranose, ABC transporter, ...
Authors:Morera, S, Vigouroux, A, El Sahili, A.
Deposit date:2018-11-19
Release date:2019-01-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis of a non-natural glucose-2-phosphate ester able to dupe the acc system of Agrobacterium fabrum.
Org. Biomol. Chem., 17, 2019
1WYY
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BU of 1wyy by Molmil
Post-fusion hairpin conformation of the sars coronavirus spike glycoprotein
Descriptor: CHLORIDE ION, E2 Glycoprotein
Authors:Duquerroy, S, Vigouroux, A, Rottier, P.J.M, Rey, F.A, Bosch, B.J.
Deposit date:2005-02-18
Release date:2005-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Central ions and lateral asparagine/glutamine zippers stabilize the post-fusion hairpin conformation of the SARS coronavirus spike glycoprotein
Virology, 335, 2005
1RER
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BU of 1rer by Molmil
Crystal structure of the homotrimer of fusion glycoprotein E1 from Semliki Forest Virus.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gibbons, D.L, Vaney, M.C, Roussel, A, Vigouroux, A, Reilly, B, Kielian, M, Rey, F.A.
Deposit date:2003-11-07
Release date:2004-01-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational change and protein-protein interactions of the fusion protein of Semliki Forest virus.
Nature, 427, 2004
8OF3
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BU of 8of3 by Molmil
Structure of the apoform of ALDEHYDE DEHYDROGENASE 5F1 (ALDH5F1) from the moss Physcomitrium patens
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, PENTAETHYLENE GLYCOL, ...
Authors:Morera, S, Kopecny, D, Vigouroux, A.
Deposit date:2023-03-13
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.348 Å)
Cite:A study on abiotic stress responses of aldehyde dehydrogenase (ALDH) superfamilies in moss and barley focused on members linked to the GABA shunt pathway
To Be Published

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